BAC Information

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BAC

Clone NameB6Ng01-233E13
Chromosome7 (Build37)
Map Location 72,115,481 - 72,116,531
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2, 5730507A09Rik, Ndnl2
Downstream geneTjp1, Gm1693, EG665234, Tarsl2, Tm2d3, LOC665241, Pcsk6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233E13.bB6Ng01-233E13.g
ACCGA045390GA045391
length1,0601,191
definitionB6Ng01-233E13.b B6Ng01-233E13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcaatgacttctgggtctcctgggcttgcttggttaataatga
tgaatgcagttaaacagaatgagttatttaatctggggtgttcttattgt
atttattaaggtctaatttacagaaaagaaaatttaattattttaattga
acagttggtgaatcttaacacacacacaggtagccatgtaaatgccacca
gatgaaagcatagaatgttccagagaacccttaagttccccagttcccct
ttgctctcagtctcctccaagcactaaagccctaggcaagtagcatctac
tgtctatcaccagaatcccgacaacatggtctttcatgcttggtttcctt
tccctctctcctttctcctttcttttctatctttctttgaaagtggccta
ccacacaacccaggctgaccttgatattgcaatctcccaagatctaggat
tacaagcatctgagatcacaacaggtctggcttctttagcctatttcttt
tgagattcatccatgttgcatatagcgggtacagtgacctcgtcagcccc
agcagagttctatcagaacctagagaaatcaagctaatactgacatggaa
gccccatccttctgggctagcatcctagttctgaaggtgctctgcatact
accaaaggggaaaagtcgtcagtttaatgcaggtgtgacccctatgtgta
ctaaagtaacaactgacctggaaatacatggcagctggtgcaatgtcata
gaagcaatcaagcactttctgattggatttaaggtctccttcacaaaatt
aattgcatacctgttactgtcactggaccaagagcctatagctggatagg
tcacaggtcctaggagagaatgtactactactgttctgctaaatgggcat
agcattaaaacaacccctactgacctggattatgcctgtagattaggaca
tttctcagcctttatccacagaagcttctatttgcatagatgatgaggaa
acacacaggagacccataattggttcaaggtacagaggaggtggagaaaa
ctacagaatg
gaattccttgataaatcactggggaatccttagagtcattttctacaaag
gctctattacgttgtagcaatgcacagctggtcttatttcttcacatcct
tgcaagtacatgctattttctgggcttaattttcttaataatgttctttg
attcataaaaaggttttagttccttgagtatgatctacctaatttttcat
tcattgctcatgttcttattgtcatgatttaccagtcttctgttactata
gtaaaaaacctgatacaattagcttataaagaaaatgcgattaccttgac
ctactgttttggagattttgatgcaaaatagagtggactcattggtctga
gtctctgattcatctattggatggcacccgatgacaaggcagggattcca
tggtaaagcaaacctcatctccagagaagaaaacagaaaaatggaggtcc
caggctccacaaacttaagtgttgtcttagtttctttctttctttctttc
tttctttctttctttctttctttctttctttctttctttctttctttctt
tcttttttttttttgttgttgttgttgttgctgctgtaataagtgccctg
acaaggggaacttgagtacagagggattattttgactcattgctttaggt
tgtagtccaccatgatgggacaccacagctgctggagtttaaagcatctg
tcagatcacagtcacagttagcaaacagaaaacaaaagattcttgtgctg
agatcactttctcttgtttgtgaagtttagaatcccagccagggggatgg
tgttacccacagtgggcaggtcttcccatctcagttaacctaatgaagac
aatcccccacaggcatgccagagctgcaccctcaggttatttttaggagc
tcatcaagcagaggcttgataattaaccatcacagctccacaccctgaca
gtctgataccaaagatgacattttaaaccataatattcccttggtcctca
gaatcccatgcttatcacataatgcaaattcacaatccaacttaaatgcc
taacacttctttagaatccaaacttttgaaccaaagttccacacctcatc
tgaaattcaggtgataggccttaactgacatgcataaataaaaaaaaatg
tacgctttccggaacagtgtcaagattatggacacctacga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_72115481_72116531
seq2: B6Ng01-233E13.b_45_1104

seq1  GAATTCTTCAATGACTTCTGGGTCTCCTGGGCTTGCTTGGTTAATAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAATGACTTCTGGGTCTCCTGGGCTTGCTTGGTTAATAATGA  50

seq1  TGAATGCAGTTAAACAGAATGAGTTATTTAATCTGGGGTGTTCTTATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCAGTTAAACAGAATGAGTTATTTAATCTGGGGTGTTCTTATTGT  100

seq1  ATTTATTAAGGTCTAATTTACAGAAAAGAAAATTTAATTATTTTAATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTAAGGTCTAATTTACAGAAAAGAAAATTTAATTATTTTAATTGA  150

seq1  ACAGTTGGTGAATCTTAACACACACACAGGTAGCCATGTAAATGCCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGGTGAATCTTAACACACACACAGGTAGCCATGTAAATGCCACCA  200

seq1  GATGAAAGCATAGAATGTTCCAGAGAACCCTTAAGTTCCCCAGTTCCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAGCATAGAATGTTCCAGAGAACCCTTAAGTTCCCCAGTTCCCCT  250

seq1  TTGCTCTCAGTCTCCTCCAAGCACTAAAGCCCTAGGCAAGTAGCATCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTCAGTCTCCTCCAAGCACTAAAGCCCTAGGCAAGTAGCATCTAC  300

seq1  TGTCTATCACCAGAATCCCGACAACATGGTCTTTCATGCTTGGTTTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATCACCAGAATCCCGACAACATGGTCTTTCATGCTTGGTTTCCTT  350

seq1  TCCCTCTCTCCTTTCTCCTTTCTTTTCTATCTTTCTTTGAAAGTGGCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCTCCTTTCTCCTTTCTTTTCTATCTTTCTTTGAAAGTGGCCTA  400

seq1  CCACACAACCCAGGCTGACCTTGATATTGCAATCTCCCAAGATCTAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAACCCAGGCTGACCTTGATATTGCAATCTCCCAAGATCTAGGAT  450

seq1  TACAAGCATCTGAGATCACAACAGGTCTGGCTTCTTTAGCCTATTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCATCTGAGATCACAACAGGTCTGGCTTCTTTAGCCTATTTCTTT  500

seq1  TGAGATTCATCCATGTTGCATATAGCGGGTACAGTGACCTCGTCAGCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTCATCCATGTTGCATATAGCGGGTACAGTGACCTCGTCAGCCCC  550

seq1  AGCAGAGTTCTATCAGAACCTAGAGAAATCAAGCTAATACTGACATGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGTTCTATCAGAACCTAGAGAAATCAAGCTAATACTGACATGGAA  600

seq1  GCCCCATCCTTCTGGGCTAGCATCCTAGTTCTGAAGGTGCTCTGCATACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATCCTTCTGGGCTAGCATCCTAGTTCTGAAGGTGCTCTGCATACT  650

seq1  ACCAAAGGGGAAAAGTCGTCAGTTTAATGCAGGTGTGACCCCTATGTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGGGGAAAAGTCGTCAGTTTAATGCAGGTGTGACCCCTATGTGTA  700

seq1  CTAAAGTAACAACTGACCTGGAAATACATGGCAGCTGGTGCAATGTCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTAACAACTGACCTGGAAATACATGGCAGCTGGTGCAATGTCATA  750

seq1  GAAGCAATCAAGCACTTTCTGATTGGATTTAAGGTCTCCTTCACAAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAATCAAGCACTTTCTGATTGGATTTAAGGTCTCCTTCACAAAATT  800

seq1  AATTGCATACCTGTTACTGTCACTGGACCAAGAGCCTATAGCTGGATAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCATACCTGTTACTGTCACTGGACCAAGAGCCTATAGCTGGATAGG  850

seq1  TCACAGGTCCTAGGAGAGAATGTACTACTACTGTTCTGCTAAATGGGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGTCCTAGGAGAGAATGTACTACTACTGTTCTGCTAAATGGGCAT  900

seq1  AGCATTAAAACAACCCCTACTGACCTGGATTATGCCTGTAGATTAGGACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTAAAACAACCCCTACTGACCTGGATTATGCCTGTAGATTAGGACA  950

seq1  TTTCTCAGCCTTTAT-CACAGAAGCTTCTATTTGCAATAGATGATGA-GA  998
      ||||||||||||||| ||||||||||||||||||| ||||||||||| ||
seq2  TTTCTCAGCCTTTATCCACAGAAGCTTCTATTTGC-ATAGATGATGAGGA  999

seq1  AACACA---GAGACCCATAATTGG-TCAAGGTACAGA-GAG--TGAG-AA  1040
      ||||||   ||||||||||||||| |||||||||||| |||   ||| ||
seq2  AACACACAGGAGACCCATAATTGGTTCAAGGTACAGAGGAGGTGGAGAAA  1049

seq1  ACTACAGAATG  1051
      |||||||||||
seq2  ACTACAGAATG  1060