BAC Information

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BAC

Clone NameB6Ng01-233O16
Chromosome7 (Build37)
Map Location 116,038,788 - 116,172,761
singlet/doubletdoublet
Overlap geneNlrp10, Eif3s5, BC049265, Tub
Upstream geneOlfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519
Downstream geneRic3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233O16.bB6Ng01-233O16.g
ACCGA045834GA045835
length1,1431,180
definitionB6Ng01-233O16.b B6Ng01-233O16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,038,788 - 116,039,928)(116,171,607 - 116,172,761)
sequence
gaattcctgattctctaccatcttccaatcttacatacaactagctgttt
tctttcttgtccaaatccccttcagagcccccttctgtacaaagctcctc
actctccctccacttgtctcccctctacctaattctctctccactctaac
gccccttgtttccagatttctccccactgtcagtactcgtacatccttag
agtctgaaacccataaacattgccaaatcctggccaccactcaagttcat
tcttatcagtatatggaaccctgatgacttcccacgtttcacaccttctc
ttcccatctgtgtctcctacgactccatcaaaacaatcccatgcttcctc
ccaaaacatccagccctcccctgactcacagaataaaatgctcatttctc
tgccaggcatgtaaggaaacaagagtgggagagacagttgtagaagcata
agtgaagagaatgcactctagtgacacctgagtgtcagaacagaggatgc
cagccattacataaagctttagagagaaacaacagaatcttagtaaggaa
catgacacgggaaagccagaggacagaattgtataacaaactgaagacac
atgataccttgggttcatgttattaggacatgacagagttttgttttgtt
ttgttttgttttgttttgttttgttttgttttgttttgttttgttttaag
ttgatttactaactatgactctggagatatcctaaaagcaaaaacctagg
actagggagatggctcagtgggtaacttgcttggtgttctggttcaagtt
tgaggacctgagtttggagccccagaaaccacttgaaatagctgggtcta
catagtgatatgcatctgctatcccagcacgggggcagagtgggagacag
gcagattctaggactcaatgctcagtcggcagagctggaatgacaagctc
aagtttccatgagactctgtcaatagaaaaatcaggtagatatcttgaca
tgatgctgcatgctttagttcagccactccaggaagcagagacaggcaag
ttctagtcattagggcttacacaatgattttctgtcttcaggaacaaaag
aaaaaggccagagaaactataaagaaggccactcagtcggcct
gaattcagtacaagtgtttacccatggagagcctgaaccagggaggtaaa
gatgaagaataaaatgtctgcaacatctacatttgatggtctaatagtca
cctctaaatctagcacaggccagactggtcccatgtataccccagcttgc
tccagtcagtggccggtcagcagttcaggtcagagtgagaacagtgtcct
cactcaagtgcactagagtcacacaaacgtcactctctcacctcatttct
aacctagccacagcttctgtcagctatccattcatgttacaccagcatct
aagaccaccagacagccactaatgcaaccccttctttctgccctgatctc
cccccccccccaacatctcagcacagtagcccttgcagtgttaaaggagg
ttttcttctccctgctggagctggtgttctgtggtcagggccttatgtga
tttggcccctactccttagttttcttgctatcttaactctctcttctgca
agcactctgccatccacagacatgcacacagctgattttcacttctgatc
ttttctcaggagttaccttggcaagaccctctctgccgtcactcctacgg
gtctacacacaccttcacatatacccatacctctacttgatttttcattc
tgaacactgatcaagaacgtgcctatttcatttacatacgttttatggct
tgtctctcactaaagattaaaatgccatagggtcttactgtttctgttta
ctatgtcctaagtccagccaacactaccatgaatttagacggtctcaggc
tgcttctctaaaactgaccagcagatggcactatgagatcatccaaagta
actgcagagtctttatttgtccctaagaagttgtccccggtatatcttcc
tttttaaaaggaagaaaccaagtgttgaacaggagaatgtttcttcttat
tttaataccccaaattcttgttcctgttggtataaattgttggcaattgc
ccccaacttcgagcttcgtttccagaccacgaagggaacagaaatcttct
tttctgaaacaaattctggaaaggccctcgtacaaacgccagtgttggcc
aaatgcatctgtcagcagcgacctggtggtcaaggttacagaaaggaacc
taaggcctctacctctctcctgtccaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_116038788_116039928
seq2: B6Ng01-233O16.b_47_1189

seq1  GAATTCCTGATTCTCTACCATCTTCCAATCTTACATACAACTAGCTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATTCTCTACCATCTTCCAATCTTACATACAACTAGCTGTTT  50

seq1  TCTTTCTTGTCCAAATCCCCTTCAGAGCCCCCTTCTGTACAAAGCTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTGTCCAAATCCCCTTCAGAGCCCCCTTCTGTACAAAGCTCCTC  100

seq1  ACTCTCCCTCCACTTGTCTCCCCTCTACCTAATTCTCTCTCCACTCTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCCTCCACTTGTCTCCCCTCTACCTAATTCTCTCTCCACTCTAAC  150

seq1  GCCCCTTGTTTCCAGATTTCTCCCCACTGTCAGTACTCGTACATCCTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTGTTTCCAGATTTCTCCCCACTGTCAGTACTCGTACATCCTTAG  200

seq1  AGTCTGAAACCCATAAACATTGCCAAATCCTGGCCACCACTCAAGTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAAACCCATAAACATTGCCAAATCCTGGCCACCACTCAAGTTCAT  250

seq1  TCTTATCAGTATATGGAACCCTGATGACTTCCCACGTTTCACACCTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCAGTATATGGAACCCTGATGACTTCCCACGTTTCACACCTTCTC  300

seq1  TTCCCATCTGTGTCTCCTACGACTCCATCAAAACAATCCCATGCTTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATCTGTGTCTCCTACGACTCCATCAAAACAATCCCATGCTTCCTC  350

seq1  CCAAAACATCCAGCCCTCCCCTGACTCACAGAATAAAATGCTCATTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACATCCAGCCCTCCCCTGACTCACAGAATAAAATGCTCATTTCTC  400

seq1  TGCCAGGCATGTAAGGAAACAAGAGTGGGAGAGACAGTTGTAGAAGCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGCATGTAAGGAAACAAGAGTGGGAGAGACAGTTGTAGAAGCATA  450

seq1  AGTGAAGAGAATGCACTCTAGTGACACCTGAGTGTCAGAACAGAGGATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGAGAATGCACTCTAGTGACACCTGAGTGTCAGAACAGAGGATGC  500

seq1  CAGCCATTACATAAAGCTTTAGAGAGAAACAACAGAATCTTAGTAAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATTACATAAAGCTTTAGAGAGAAACAACAGAATCTTAGTAAGGAA  550

seq1  CATGACACGGGAAAGCCAGAGGACAGAATTGTATAACAAACTGAAGACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACACGGGAAAGCCAGAGGACAGAATTGTATAACAAACTGAAGACAC  600

seq1  ATGATACCTTGGGTTCATGTTATTAGGACATGACAGAGTTTTGTTTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACCTTGGGTTCATGTTATTAGGACATGACAGAGTTTTGTTTTGTT  650

seq1  TTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTAAG  700

seq1  TTGATTTACTAACTATGACTCTGGAGATATCCTAAAAGCAAAAACCTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTACTAACTATGACTCTGGAGATATCCTAAAAGCAAAAACCTAGG  750

seq1  ACTAGGGAGATGGCTCAGTGGGTAACTTGCTTGGTGTTCTGGTTCAAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGAGATGGCTCAGTGGGTAACTTGCTTGGTGTTCTGGTTCAAGTT  800

seq1  TGAGGACCTGAGTTTGGAGCCCCAGAAACCACTTGAAATAGCTGGGTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACCTGAGTTTGGAGCCCCAGAAACCACTTGAAATAGCTGGGTCTA  850

seq1  CATAGTGATATGCATCTGCTATCCCAGCACGGGGGCAGAGT-GGAGACAG  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CATAGTGATATGCATCTGCTATCCCAGCACGGGGGCAGAGTGGGAGACAG  900

seq1  GCAGATTCTAGGACTCAATGCTCAGTCGGCAGAGCTGAAATGACAAGCTC  949
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCAGATTCTAGGACTCAATGCTCAGTCGGCAGAGCTGGAATGACAAGCTC  950

seq1  AAG-TTCCATGAGACTCTGTC-ATAG-AAAATCAGGTAGATATCTTGACA  996
      ||| ||||||||||||||||| |||| |||||||||||||||||||||||
seq2  AAGTTTCCATGAGACTCTGTCAATAGAAAAATCAGGTAGATATCTTGACA  1000

seq1  TGATGCTGCATGCCTTTAGTTCCAGCACT-CAGGAAGCAGAGACAGGCAA  1045
      |||||||||||| |||||||||   |||| ||||||||||||||||||||
seq2  TGATGCTGCATG-CTTTAGTTCAGCCACTCCAGGAAGCAGAGACAGGCAA  1049

seq1  GTTCTAGGTCAATCAGGGC-TACACAATGATATCCTGTCTCAAAGAACAA  1094
      |||||| ||| || ||||| ||||||||||| | ||||||  | |||| |
seq2  GTTCTA-GTC-ATTAGGGCTTACACAATGATTTTCTGTCTTCAGGAAC-A  1096

seq1  AAAGAAAAAGG-CAGAG-AACTATAAAAGAAGCCACTCAGTGTCGGCCT  1141
      ||||||||||| ||||| |||||||||  | ||||||||  ||||||||
seq2  AAAGAAAAAGGCCAGAGAAACTATAAAGAAGGCCACTCA--GTCGGCCT  1143

seq1: chr7_116171607_116172761
seq2: B6Ng01-233O16.g_70_1249 (reverse)

seq1  CTCCTGGACAGGAG-GAAGTAGAGGCC-TGGGTTCCTTTCTGTA--CTTG  46
      |||||||||||||| || ||||||||| | ||||||||||||||  ||||
seq2  CTCCTGGACAGGAGAGAGGTAGAGGCCTTAGGTTCCTTTCTGTAACCTTG  50

seq1  ACCCACAGCTCGCTGCTG-CAGCTGCATT--GCCAGGCACT-GCGTTGGT  92
      |||  ||| ||||||||| ||| ||||||  ||||  |||| ||||| ||
seq2  ACCACCAGGTCGCTGCTGACAGATGCATTTGGCCA-ACACTGGCGTTTGT  99

seq1  ACGA-GGCCTTT-CAGAA-TTGTTTCAGAAAAG-AGA-TTCTGTTCCCTC  137
      |||| ||||||| ||||| |||||||||||||| ||| ||||||||||| 
seq2  ACGAGGGCCTTTCCAGAATTTGTTTCAGAAAAGAAGATTTCTGTTCCCTT  149

seq1  CGTGGTCTGGAAACGGAAGCTTGGAGTT-GGGGCAATTGCCAACA--TTA  184
      |||||||||||||| |||||| | |||| ||||||||||||||||  |||
seq2  CGTGGTCTGGAAAC-GAAGCTCGAAGTTGGGGGCAATTGCCAACAATTTA  198

seq1  TACCAACAGGAACAAGA--TTGGGGTAT--AAAT-AGAAG-AACATTCT-  227
      |||||||||||||||||  |||||||||  |||| ||||| |||||||| 
seq2  TACCAACAGGAACAAGAATTTGGGGTATTAAAATAAGAAGAAACATTCTC  248

seq1  CTGTTC-ACACTTGGTTTCTTCCTTTT-AAAAGGAAGATATACCGGGGAC  275
      |||||| |||||||||||||||||||| ||||||||||||||||||||||
seq2  CTGTTCAACACTTGGTTTCTTCCTTTTAAAAAGGAAGATATACCGGGGAC  298

seq1  -ACTTCTTAGGGAC-AATTAAGACTCTGCAGTTACTTTGGATGATCTCAT  323
       ||||||||||||| ||| |||||||||||||||||||||||||||||||
seq2  AACTTCTTAGGGACAAATAAAGACTCTGCAGTTACTTTGGATGATCTCAT  348

seq1  AGTGCCATCTGCTGGTCAGTTTTAGAGAAGCAGCCTGAGACCGTCTAAAT  373
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCATCTGCTGGTCAGTTTTAGAGAAGCAGCCTGAGACCGTCTAAAT  398

seq1  TCATGGTAGTGTTGGCTGGACTTAGGACATAGTAAACAGAAACAGTAAGA  423
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTAGTGTTGGCTGGACTTAGGACATAGTAAACAGAAACAGTAAGA  448

seq1  CCCTATGGCATTTTAATCTTTAGTGAGAGACAAGCCATAAAACGTATGTA  473
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGGCATTTTAATCTTTAGTGAGAGACAAGCCATAAAACGTATGTA  498

seq1  AATGAAATAGGCACGTTCTTGATCAGTGTTCAGAATGAAAAATCAAGTAG  523
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATAGGCACGTTCTTGATCAGTGTTCAGAATGAAAAATCAAGTAG  548

seq1  AGGTATGGGTATATGTGAAGGTGTGTGTAGACCCGTAGGAGTGACGGCAG  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGGGTATATGTGAAGGTGTGTGTAGACCCGTAGGAGTGACGGCAG  598

seq1  AGAGGGTCTTGCCAAGGTAACTCCTGAGAAAAGATCAGAAGTGAAAATCA  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTCTTGCCAAGGTAACTCCTGAGAAAAGATCAGAAGTGAAAATCA  648

seq1  GCTGTGTGCATGTCTGTGGATGGCAGAGTGCTTGCAGAAGAGAGAGTTAA  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGCATGTCTGTGGATGGCAGAGTGCTTGCAGAAGAGAGAGTTAA  698

seq1  GATAGCAAGAAAACTAAGGAGTAGGGGCCAAATCACATAAGGCCCTGACC  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCAAGAAAACTAAGGAGTAGGGGCCAAATCACATAAGGCCCTGACC  748

seq1  ACAGAACACCAGCTCCAGCAGGGAGAAGAAAACCTCCTTTAACACTGCAA  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACACCAGCTCCAGCAGGGAGAAGAAAACCTCCTTTAACACTGCAA  798

seq1  GGGCTACTGTGCTGAGATGTTGGGGGGGGGGGGAGATCAGGGCAGAAAGA  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACTGTGCTGAGATGTTGGGGGGGGGGGGAGATCAGGGCAGAAAGA  848

seq1  AGGGGTTGCATTAGTGGCTGTCTGGTGGTCTTAGATGCTGGTGTAACATG  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTGCATTAGTGGCTGTCTGGTGGTCTTAGATGCTGGTGTAACATG  898

seq1  AATGGATAGCTGACAGAAGCTGTGGCTAGGTTAGAAATGAGGTGAGAGAG  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATAGCTGACAGAAGCTGTGGCTAGGTTAGAAATGAGGTGAGAGAG  948

seq1  TGACGTTTGTGTGACTCTAGTGCACTTGAGTGAGGACACTGTTCTCACTC  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTTTGTGTGACTCTAGTGCACTTGAGTGAGGACACTGTTCTCACTC  998

seq1  TGACCTGAACTGCTGACCGGCCACTGACTGGAGCAAGCTGGGGTATACAT  1023
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGAACTGCTGACCGGCCACTGACTGGAGCAAGCTGGGGTATACAT  1048

seq1  GGGACCAGTCTGGCCTGTGCTAGATTTAGAGGTGACTATTAGACCATCAA  1073
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCAGTCTGGCCTGTGCTAGATTTAGAGGTGACTATTAGACCATCAA  1098

seq1  ATGTAGATGTTGCAGACATTTTATTCTTCATCTTTACCTCCCTGGTTCAG  1123
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGATGTTGCAGACATTTTATTCTTCATCTTTACCTCCCTGGTTCAG  1148

seq1  GCTCTCCATGGGTAAACACTTGTACTGAATTC  1155
      ||||||||||||||||||||||||||||||||
seq2  GCTCTCCATGGGTAAACACTTGTACTGAATTC  1180