BAC Information

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BAC

Clone NameB6Ng01-235J19
Chromosome7 (Build37)
Map Location 13,394,409 - 13,395,578
singlet/doubletsinglet
Overlap geneZfp329
Upstream geneEG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515
Downstream geneZfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235J19.bB6Ng01-235J19.g
ACCGA047043GA047044
length1,1841,164
definitionB6Ng01-235J19.b B6Ng01-235J19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaataactcacttaaagaaatacaggagaacactgctaaagagtt
acaagtccttaaagaaaaacaggaaaacactgctaaagagttacaagtcc
ttaaagaaaaacaggaaaacacaaccaaacaggtagaagtccttatagaa
aaacaggaaaacacatccaaacaggtgatggaaatgaacaaaaccatact
agacctaaaaagggaagtagacacaataaagaaaacccaaagtgaggcga
cgctggagatagaaaccctaggaaagaaatctggaaccatagatgccagc
atcagcaacagaatacaagagatggaagagagaatctcaggtgcagaaga
ctccatagagaacatcggcacaacaatcaaagaaaatggaaaatgcaaaa
agatcctaactcaaaacatccaggaaatccaggacacaatgagaagacca
aacctacggataataggagtggatgagaatgaagattttcaactcaaagg
accagcaaacatcttcaacaaaattattgaagaaaacttcccaaatctaa
agaaagagatgcccatgaacatacaagaagcctacagaactccaaataga
ctggaccagaaaagaaattcctcccgacacataataatcagaacatcaaa
tgcactaaataaagatagaatactaaaagcagtaagggaaaaaggtcaag
taacatataaaggcaagcctatcagaattacaccagatttttcaccagag
actatgaaagccagaagagcctggacagatgttatacagacactaagaga
acacaaatgccagcccaggctactatacccagccaaactctcaattacca
tagatggagaaaccaaagtattccacgacaaaactaaattcacccattat
ctctccacgaatccagcccttcaaaggataataacagaaaaaaaccaata
caagacgggaaccacgccctagaaaaaacaagagataatccctcacaacc
taaagaagacagccacaagaacagaatgccactttacaacaaaaaataac
agagcacataccttcctaatatctctaatattcatgactcatcccaataa
aagaactgactaacgactgcctacacaacggaacactctgctgctacaga
tccatctcagaaagacgacccttactctcaaata
gaattcacactaaggagactccataccagtgtctgaagtgtggaaagtcc
ttcagacagaacactcacctggtagtacatcagagacttcataacagaga
gggtcccagccagtgtcctcactgtgggaaaatatttagaaggagctggt
gtcttgcccgacatcagagaacacaccttgaagagcagcccacggaaaca
taatggacatgggccatgctgtccttgagtgaacaaaggatttgttttca
gatgtgacttcccttgctcgcagaaaagaattctttatatatataaaaaa
attaagtacgagatattctataattgcattaacactgttattagggaact
cctgaagagaggactgaaaggtagtcaatgtaggaaaggcttcagggatg
attcagcctataccaaacacgtagcgcatacactgaaataaagcaccgtc
agcgaggaaggcattttcctagagacactcatttacctttacatcaggat
actgaaactggaaagaacctgtgaagtcattcagtaggtaaccagacatc
ttgaacagtatcaccttattgtatgcaagcaaatgtttattatagagtca
aagcttggaagtgttatttgggagtgacacttttgtcagtttgtactttc
ctgtttccataaaggcgtagtggtgggacgtcttacacagtgctctacaa
actaccacaggctgtagctagggttttctgtttgaatgcacttctgtttt
atggtcccgccagaacacagatgacgcatttagtgaggtgaaactggata
taggacttgcttgtgattgaaatgaagttgaccctcttaagactaaaata
ctctccgtggtggaaagggctgcttctaagaaataggatccattgcttta
ggcgttgaacaagaaaatattgaattgtattcagttatcacctgccttca
ctgttgttaattattcagatactagtttgtgtagagttcaggtcctttga
gcaaaatcaaaggtttcattgccatcctaaaatactcagatcattgtaaa
aggaggcgtaaaagttagattatgtactataattatgggtcgttatttgc
tggtagtaagccagtgcaagatgaataattggcttctttagagaactaca
atgtggttcttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_13394409_13395578
seq2: B6Ng01-235J19.g_67_1230 (reverse)

seq1  AAAAAGAACACAATTGTAG-TCTCCTAAGAAGCCACTTAATTCTATCTTC  49
      |||||||||   ||||||| ||||  ||||||||| || |||| ||||| 
seq2  AAAAAGAACCACATTGTAGTTCTCTAAAGAAGCCAATT-ATTC-ATCTTG  48

seq1  CACT-GCTAACCTACAACCAAAT-ACGA-CCATAATTATAGTAACAATAA  96
      |||| ||| | |||| | ||||| |||| ||||||||||||| |||   |
seq2  CACTGGCTTA-CTACCAGCAAATAACGACCCATAATTATAGT-ACA--TA  94

seq1  ATCT-ACTTTTACGCCTTCTTTTACAATGATCTGAGTATTTTTAGGATGG  145
      |||| |||||||||||| |||||||||||||||||||| |||||||||||
seq2  ATCTAACTTTTACGCCTCCTTTTACAATGATCTGAGTA-TTTTAGGATGG  143

seq1  CAATGAAACCTTTGGATTTTGCTTCAAAGGACCTGAACTCTACACAAACT  195
      ||||||||||||| |||||||| |||||||||||||||||||||||||||
seq2  CAATGAAACCTTT-GATTTTGC-TCAAAGGACCTGAACTCTACACAAACT  191

seq1  AGTATCTGAAATAATTAACAACAGTGAAGGCAGGTGATAACTGAAATACA  245
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  AGTATCTG-AATAATTAACAACAGTGAAGGCAGGTGATAACTG-AATACA  239

seq1  ATTCAATATTTTCTTGTTCAACGCCTAAAGCAATGGATCCTATTTCTTAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATATTTTCTTGTTCAACGCCTAAAGCAATGGATCCTATTTCTTAG  289

seq1  AAGCAGCCCTTTCCACCACGGAGAGTATTTTAGTCTTAAGAGGGTCAACT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCCCTTTCCACCACGGAGAGTATTTTAGTCTTAAGAGGGTCAACT  339

seq1  TCATTTCAATCACAAGCAAGTCCTATATCCAGTTTCACCTCACTAAATGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCAATCACAAGCAAGTCCTATATCCAGTTTCACCTCACTAAATGC  389

seq1  GTCATCTGTGTTCTGGCGGGACCATAAAACAGAAGTGCATTCAAACAGAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTGTGTTCTGGCGGGACCATAAAACAGAAGTGCATTCAAACAGAA  439

seq1  AACCCTAGCTACAGCCTGTGGTAGTTTGTAGAGCACTGTGTAAGACGTCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTAGCTACAGCCTGTGGTAGTTTGTAGAGCACTGTGTAAGACGTCC  489

seq1  CACCACTACGCCTTTATGGAAACAGGAAAGTACAAACTGACAAAAGTGTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTACGCCTTTATGGAAACAGGAAAGTACAAACTGACAAAAGTGTC  539

seq1  ACTCCCAAATAACACTTCCAAGCTTTGACTCTATAATAAACATTTGCTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAAATAACACTTCCAAGCTTTGACTCTATAATAAACATTTGCTTG  589

seq1  CATACAATAAGGTGATACTGTTCAAGATGTCTGGTTACCTACTGAATGAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAATAAGGTGATACTGTTCAAGATGTCTGGTTACCTACTGAATGAC  639

seq1  TTCACAGGTTCTTTCCAGTTTCAGTATCCTGATGTAAAGGTAAATGAGTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGGTTCTTTCCAGTTTCAGTATCCTGATGTAAAGGTAAATGAGTG  689

seq1  TCTCTAGGAAAATGCCTTCCTCGCTGACGGTGCTTTATTTCAGTGTATGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGGAAAATGCCTTCCTCGCTGACGGTGCTTTATTTCAGTGTATGC  739

seq1  GCTACGTGTTTGGTATAGGCTGAATCATCCCTGAAGCCTTTCCTACATTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACGTGTTTGGTATAGGCTGAATCATCCCTGAAGCCTTTCCTACATTG  789

seq1  ACTACCTTTCAGTCCTCTCTTCAGGAGTTCCCTAATAACAGTGTTAATGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTTTCAGTCCTCTCTTCAGGAGTTCCCTAATAACAGTGTTAATGC  839

seq1  AATTATAGAATATCTCGTACTTAATTTTTTTATATATATAAAGAATTCTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAGAATATCTCGTACTTAATTTTTTTATATATATAAAGAATTCTT  889

seq1  TTCTGCGAGCAAGGGAAGTCACATCTGAAAACAAATCCTTTGTTCACTCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCGAGCAAGGGAAGTCACATCTGAAAACAAATCCTTTGTTCACTCA  939

seq1  AGGACAGCATGGCCCATGTCCATTATGTTTCCGTGGGCTGCTCTTCAAGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCATGGCCCATGTCCATTATGTTTCCGTGGGCTGCTCTTCAAGG  989

seq1  TGTGTTCTCTGATGTCGGGCAAGACACCAGCTCCTTCTAAATATTTTCCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTCTGATGTCGGGCAAGACACCAGCTCCTTCTAAATATTTTCCC  1039

seq1  ACAGTGAGGACACTGGCTGGGACCCTCTCTGTTATGAAGTCTCTGATGTA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAGGACACTGGCTGGGACCCTCTCTGTTATGAAGTCTCTGATGTA  1089

seq1  CTACCAGGTGAGTGTTCTGTCTGAAGGACTTTCCACACTTCAGACACTGG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGGTGAGTGTTCTGTCTGAAGGACTTTCCACACTTCAGACACTGG  1139

seq1  TATGGAGTCTCCTTAGTGTGAATTC  1170
      |||||||||||||||||||||||||
seq2  TATGGAGTCTCCTTAGTGTGAATTC  1164