BAC Information

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BAC

Clone NameB6Ng01-235L04
Chromosome7 (Build37)
Map Location 25,141,406 - 25,288,631
singlet/doubletdoublet
Overlap geneKcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4
Upstream geneNlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5
Downstream geneZfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235L04.bB6Ng01-235L04.g
ACCGA047108GA047109
length1,177579
definitionB6Ng01-235L04.b B6Ng01-235L04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,287,478 - 25,288,631)(25,141,406 - 25,141,982)
sequence
gaattcttctttccgtttgtgtccatcgccgccattgaggaaggcttctc
tggcttctccctgctcatccaagccactggcctcatgggtcagataggat
cctgagagcaggaagatgtccccagggcaaagggcatggtgatgaagacc
cagggagtgtgtataggaaaaggagacaggcaagagacacagcatatgaa
ggaagtgggagaaagggaaccagagtccagttcagtgaggcacaggacaa
aggtagagaaagaggtaaagaggaattaggaagactccaaaaagtcacag
aggacccaccctcatccccgatatgccctttttttttttttttttttttg
ttgagacatggtctccagtttcccaggtaagcctcaaacttgatagttac
aagtgaccttgcactttgtattcccctgccgctatctcccaaatactgga
gttagaagcatccaccgccatgttcagttctgggcggctttgttcatgct
aagacagagtctatcaatggagtcccctcccctgcacctccttcccaacc
cttcccccgcttctgatagtattcctttaagtctatgctgtcaataaatt
cagcaacttgaaaaataaattactcaaaatctctccccttattctgctaa
atctcagccctttcagagcccagggccaaaagctccaccctacagggtat
tagtcaaaactatggcttgatttcaaatccaatccagtgtctaggctcca
tccccttgcaatccagaatcagaaatgaccacacccttcactgatttcag
gccccgccctcacttacccttctgtcggacggagcaccagaccatgcccc
actagcacacatatgatcaggaaacaccagtagcgccaggatgcggcccc
acaatggcggtaagggaaccgatgtctgagccttctaccactgcaccggg
gtcttgttcggagagagaatgtcgaagaaaagtcctaatccagccttctg
ctgccaagccaattaaggctattcctgcaacataggctttgctcctttga
attgttcttgccaccttttttaaggccccccccgcccccatttgctcagt
tcttctggaagaattcttgccttttaccacgggtggttttcactctcctg
tatctaccaccgccctctataccctcc
gaattcaaggtctaagtttgatacatagtgcctagcctgagctacataag
accttgtctcaaaacaaacaaaaagaaaaagaaaaagaaaaaaggagtat
gatccagtaatgggagcacagaaaggaactagggagataattctgatggc
acagatgcccgagaagacacctttgtgacaaaacagtaagtgaggaggtt
ttagggccacttgcataaagagtcaggatagggtcagcgagagggctcag
tgactaaaggggcttgccacaaaacctgatcacctgagttcagtccctgg
atcccacacagtggaaggagagaacagactccccacagttgtcctctgac
ctccacatgtcacatgccacatatgtacacgctcacacttacaccgtaga
aataaacaaatgaactttttaaagttgggatgtggtgatatatggaggaa
actgagtgtgaagaggatgggttgggcctgaaaggcctagaatatcccat
ctgagtgagacttctcagcttcctccataagccattgggagcccatggga
ggaagggatttagagacagagaggagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_25287478_25288631
seq2: B6Ng01-235L04.b_44_1220 (reverse)

seq1  GGAGGGTATAGA-GGCG--TGTAGATACCAGGAGTGAAAAACCCACCGGT  47
      |||||||||||| ||||   ||||||| |||||| |  ||| ||||| ||
seq2  GGAGGGTATAGAGGGCGGTGGTAGATA-CAGGAGAGTGAAAACCACCCGT  49

seq1  -GTAAAAGCCAAGGATTCT--CAGAAGAACTGGAGCAAATGGGGGCGGGG  94
       ||||||| |||| |||||  |||||||||| ||||||||||||||||||
seq2  GGTAAAAGGCAAGAATTCTTCCAGAAGAACT-GAGCAAATGGGGGCGGGG  98

seq1  GGG--CCTAAAAAAGGTGGC-AGA--CATTC-AAGGAGCAAAG-CTATG-  136
      |||  | ||||||||||||| |||   |||| ||||||||||| ||||| 
seq2  GGGGCCTTAAAAAAGGTGGCAAGAACAATTCAAAGGAGCAAAGCCTATGT  148

seq1  TGCA-GAATAG-CTTAA-TGGCCTGGCAGCAGAAGGCTGGATTAGGAC-T  182
      |||| |||||| ||||| |||| ||||||||||||||||||||||||| |
seq2  TGCAGGAATAGCCTTAATTGGCTTGGCAGCAGAAGGCTGGATTAGGACTT  198

seq1  TTCTTCGACATTCTCTCTCCGA--CAGACCCCGGTGCAGTGGTAG-AGGC  229
      ||||||||||||||||||||||   |||||||||||||||||||| ||||
seq2  TTCTTCGACATTCTCTCTCCGAACAAGACCCCGGTGCAGTGGTAGAAGGC  248

seq1  TCAGACATCGGTT-CCTTA-CGCCATTGT-GGGCGGCATCCTGGCGCTAC  276
      ||||||||||||| ||||| ||||||||| |||| |||||||||||||||
seq2  TCAGACATCGGTTCCCTTACCGCCATTGTGGGGCCGCATCCTGGCGCTAC  298

seq1  TGGTGTTT-CTGATCATATGTGTGCTAGT-GGGCATGGTCTGGTGCTCCG  324
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  TGGTGTTTCCTGATCATATGTGTGCTAGTGGGGCATGGTCTGGTGCTCCG  348

seq1  TCCGACAGAAGGGTAAGTGAGGGCGGGGCCTGAAATCAGTGAAGGGTGTG  374
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGACAGAAGGGTAAGTGAGGGCGGGGCCTGAAATCAGTGAAGGGTGTG  398

seq1  GTCATTTCTGATTCTGGATTGCAAGGGGATGGAGCCTAGACACTGGATTG  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTCTGATTCTGGATTGCAAGGGGATGGAGCCTAGACACTGGATTG  448

seq1  GATTTGAAATCAAGCCATAGTTTTGACTAATACCCTGTAGGGTGGAGCTT  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAAATCAAGCCATAGTTTTGACTAATACCCTGTAGGGTGGAGCTT  498

seq1  TTGGCCCTGGGCTCTGAAAGGGCTGAGATTTAGCAGAATAAGGGGAGAGA  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCCTGGGCTCTGAAAGGGCTGAGATTTAGCAGAATAAGGGGAGAGA  548

seq1  TTTTGAGTAATTTATTTTTCAAGTTGCTGAATTTATTGACAGCATAGACT  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTAATTTATTTTTCAAGTTGCTGAATTTATTGACAGCATAGACT  598

seq1  TAAAGGAATACTATCAGAAAGCGGGGGAAGGGTTGGGAAGGAGGTGCAGG  624
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAAAGGAATACTATCAG-AAGCGGGGGAAGGGTTGGGAAGGAGGTGCAGG  647

seq1  GGAGGGGACTCCATTGATAGACTCTGTCTTAGCATGAACAAAGCCGCCCA  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGACTCCATTGATAGACTCTGTCTTAGCATGAACAAAGCCGCCCA  697

seq1  GAACTGAACATGGCGGTGGATGCTTCTAACTCCAGTATTTGGGAGATAGC  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAACATGGCGGTGGATGCTTCTAACTCCAGTATTTGGGAGATAGC  747

seq1  GGCAGGGGAATACAAAGTGCAAGGTCACTTGTAACTATCAAGTTTGAGGC  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGGAATACAAAGTGCAAGGTCACTTGTAACTATCAAGTTTGAGGC  797

seq1  TTACCTGGGAAACTGGAGACCATGTCTCAACAAAAAAAAAAAAAAAAAAA  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGGGAAACTGGAGACCATGTCTCAACAAAAAAAAAAAAAAAAAAA  847

seq1  AAGGGCATATCGGGGATGAGGGTGGGTCCTCTGTGACTTTTTGGAGTCTT  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCATATCGGGGATGAGGGTGGGTCCTCTGTGACTTTTTGGAGTCTT  897

seq1  CCTAATTCCTCTTTACCTCTTTCTCTACCTTTGTCCTGTGCCTCACTGAA  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTCCTCTTTACCTCTTTCTCTACCTTTGTCCTGTGCCTCACTGAA  947

seq1  CTGGACTCTGGTTCCCTTTCTCCCACTTCCTTCATATGCTGTGTCTCTTG  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTCTGGTTCCCTTTCTCCCACTTCCTTCATATGCTGTGTCTCTTG  997

seq1  CCTGTCTCCTTTTCCTATACACACTCCCTGGGTCTTCATCACCATGCCCT  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCCTTTTCCTATACACACTCCCTGGGTCTTCATCACCATGCCCT  1047

seq1  TTGCCCTGGGGACATCTTCCTGCTCTCAGGATCCTATCTGACCCATGAGG  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTGGGGACATCTTCCTGCTCTCAGGATCCTATCTGACCCATGAGG  1097

seq1  CCAGTGGCTTGGATGAGCAGGGAGAAGCCAGAGAAGCCTTCCTCAATGGC  1124
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGCTTGGATGAGCAGGGAGAAGCCAGAGAAGCCTTCCTCAATGGC  1147

seq1  GGCGATGGACACAAACGGAAAGAAGAATTC  1154
      ||||||||||||||||||||||||||||||
seq2  GGCGATGGACACAAACGGAAAGAAGAATTC  1177

seq1: chr7_25141406_25141982
seq2: B6Ng01-235L04.g_69_647

seq1  GAATTCAAGGTCTAAGTTTGATACATAGTGCCTAGCCTGAGCTACATAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTCTAAGTTTGATACATAGTGCCTAGCCTGAGCTACATAAG  50

seq1  ACCTTGTCTCAAAACAAACAAAAAGAAAAAGAAAAAGAAAAAAGGAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTCTCAAAACAAACAAAAAGAAAAAGAAAAAGAAAAAAGGAGTAT  100

seq1  GATCCAGTAATGGGAGCACAGAAAGGAACTAGGGAGATAATTCTGATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGTAATGGGAGCACAGAAAGGAACTAGGGAGATAATTCTGATGGC  150

seq1  ACAGATGCCCGAGAAGACACCTTTGTGACAAAACAGTAAGTGAGGAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGCCCGAGAAGACACCTTTGTGACAAAACAGTAAGTGAGGAGGTT  200

seq1  TTAGGGCCACTTGCATAAAGAGTCAGGATAGGGTCAGCGAGAGGGCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGCCACTTGCATAAAGAGTCAGGATAGGGTCAGCGAGAGGGCTCAG  250

seq1  TGACTAAAGGGGCTTGCCACAAAACCTGATCACCTGAGTTCAGTCCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAAAGGGGCTTGCCACAAAACCTGATCACCTGAGTTCAGTCCCTGG  300

seq1  ATCCCACACAGTGGAAGGAGAGAACAGACTCCCCACAGTTGTCCTCTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACACAGTGGAAGGAGAGAACAGACTCCCCACAGTTGTCCTCTGAC  350

seq1  CTCCACATGTCACATGCCACATATGTACACGCTCACACTTACACCGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACATGTCACATGCCACATATGTACACGCTCACACTTACACCGTAGA  400

seq1  AATAAACAAATGAACTTTTTAAAGTTGGGATGTGGTGATATATGGAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAAATGAACTTTTTAAAGTTGGGATGTGGTGATATATGGAGGAA  450

seq1  ACTGAGTGTGAAGAGGATGGGTTGGGCCTGAAAGGCCTAGAATATTCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACTGAGTGTGAAGAGGATGGGTTGGGCCTGAAAGGCCTAGAATATCCCAT  500

seq1  CTGAGTGAGACTTCTCAGCTTCCTCCAAAAGCCAGTGGGAG-CCATGGGA  549
      ||||||||||||||||||||||||||| |||||| |||||| ||||||||
seq2  CTGAGTGAGACTTCTCAGCTTCCTCCATAAGCCATTGGGAGCCCATGGGA  550

seq1  GGAA-GGATTTAGAGACAGAGAGGAGCAT  577
      |||| |||||||||||||||||||||| |
seq2  GGAAGGGATTTAGAGACAGAGAGGAGCTT  579