BAC Information

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BAC

Clone NameB6Ng01-237A11
Chromosome7 (Build37)
Map Location 30,080,453 - 30,242,946
singlet/doubletdoublet
Overlap geneNeud4, Sipa1l3
Upstream geneDll3, Timm50, Supt5h, Rps16, Plekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a
Downstream geneLOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237A11.bB6Ng01-237A11.g
ACCGA048097GA048098
length1,192363
definitionB6Ng01-237A11.b B6Ng01-237A11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,241,739 - 30,242,946)(30,080,453 - 30,080,821)
sequence
gaattccagcaatctctcatttcctttaggaaacagaatgagtctgcagc
gaaggatgaatagtcgggatgcaactcttggcaacctggccctgaagctt
gtcattggtgtcctaactgcagggtcatctgcactgtagagcaggggaat
gagaacatggggccaggtgtcctgggttcaagtccctgcatcaccactta
attgtcctgtgacattaggaaagtcactagatctctttgtgcctcaaatc
tttgtccataaaatcatagttatgctcacctcctgaaataataaagggta
attaaaatttaaacttcacctcttttaagccagccatggtggatcacaag
ttctagtattctagactctgagatagaagggagttatcaggttcaaggcc
atcctgagctatttactctaggacattctggaacaacccgtgcgacagat
taagactctatctcaaaaacagaacatgtgcctcagtcccatcccgagaa
taaagaagccacctcaacacttcaaaaaaaaaaaaagtgtataattaatg
ttgtccgtcacaagtactgtatctgactggctgtgtgcattgagcctgta
ctaagctgcaaagactctgggaaaggaagcttcatcctcctccagagcct
cccatttggagaaatagatttaatatttattaccacttaaagatataaac
atacaatcttgatttttttttctcctaacatgtttttatcatgtgttcaa
atgctatttttcactttatttaaaatctcctgggaaagcctgagtgaaag
acttctgcttcctccggggaaagactggaaggcagtgagctaccatcttt
acagcgctggccttcagtgggaggttatgagcgcacttctttctccttgg
acttctggagacacatataggatgcgcattcacacagctgtgcaggcttg
ctcacacagctgacctcaaacgtggtataaccgagggtgacttcgacttc
tgctcttcctgccctgcctctagatctgggatgcagtgtgcgtcctcact
ggaactttgtgttctgttttgaggtctcacccttgttgccaggctgccct
ggaaccttctctgctgattcctccatgcctcagtctcctgatgattgctg
catagcgacacgtcccagttgcatgcagaaaataggttggga
agtctctgggacccacatgatggaagaccagaacaagccccaaaggctgc
tcctcagatccttcacatgtgcacttcatgcaggaataagagaccagcct
ggtctacgcagggagtctgaggctagctatggctatgtagtaaggcagtc
tctcagaaagggctgcacaccttttttttttttttttttttggagacagg
gtttctctgtgtagccctggctgtcctggaactcactctgtagaccaggc
ttgggtttgaactcagaaatccgcctgcctctgcctctgcctcccgagtg
ctgggattaaaggcgtgcgccaccaggcctggcggctgtgcacctttaat
atgagtgagcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_30241739_30242946
seq2: B6Ng01-237A11.b_47_1238 (reverse)

seq1  TCCCAACCTATTTCTTGCCACTGCAAACTGGGCACAGTGGTTCGTGCCTC  50
      |||||||||||||  |||   ||| |||||||          |||| | |
seq2  TCCCAACCTATTTTCTGC--ATGC-AACTGGG---------ACGTGTCGC  38

seq1  TAACTCCAGCACTCACTCAGGAGACTGAGGCAT-GAGGATCAAGCAGAGA  99
      ||  | ||||| ||| ||||||||||||||||| |||||   ||||||||
seq2  TA--TGCAGCAATCA-TCAGGAGACTGAGGCATGGAGGAATCAGCAGAGA  85

seq1  --GTTCAGGGCCAGCCTGGCAAC-AGGGTGAGACCTCAAAACAG-ACACA  145
        ||||  || |||||||||||| |||||||||||||||||||| |||||
seq2  AGGTTCCAGGGCAGCCTGGCAACAAGGGTGAGACCTCAAAACAGAACACA  135

seq1  AAGTTCCAGTGA-GACGCACACCTGCCATCCCAGAACTTAAGAGGCAGGG  194
      |||||||||||| |||||||| ||| ||||||||| ||  ||||||| ||
seq2  AAGTTCCAGTGAGGACGCACA-CTG-CATCCCAGATCT--AGAGGCA-GG  180

seq1  GCAGGAAGAGCAGAAGTCGGAAGTCACCCTCGGTTATACCACGTTTGAGG  244
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCAGGAAGAGCAGAAGTC-GAAGTCACCCTCGGTTATACCACGTTTGAGG  229

seq1  TCAGCCTGTGTGAGCAAGCCTGCACAGCTGTGTGAATGCGCATCCTATAT  294
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAG-CTGTGTGAGCAAGCCTGCACAGCTGTGTGAATGCGCATCCTATAT  278

seq1  GTGTCTCCAGAAGTCCAAGGAGAAAGAAGTGCGCTCATAACCTCCCACTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCCAGAAGTCCAAGGAGAAAGAAGTGCGCTCATAACCTCCCACTG  328

seq1  AAGGCCAGCGCTGTAAAGATGGTAGCTCACTGCCTTCCAGTCTTTCCCCG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGCGCTGTAAAGATGGTAGCTCACTGCCTTCCAGTCTTTCCCCG  378

seq1  GAGGAAGCAGAAGTCTTTCACTCAGGCTTTCCCAGGAGATTTTAAATAAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGCAGAAGTCTTTCACTCAGGCTTTCCCAGGAGATTTTAAATAAA  428

seq1  GTGAAAAATAGCATTTGAACACATGATAAAAACATGTTAGGAGAAAAAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAATAGCATTTGAACACATGATAAAAACATGTTAGGAGAAAAAAA  478

seq1  AATCAAGATTGTATGTTTATATCTTTAAGTGGTAATAAATATTAAATCTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGATTGTATGTTTATATCTTTAAGTGGTAATAAATATTAAATCTA  528

seq1  TTTCTCCAAATGGGAGGCTCTGGAGGAGGATGAAGCTTCCTTTCCCAGAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCAAATGGGAGGCTCTGGAGGAGGATGAAGCTTCCTTTCCCAGAG  578

seq1  TCTTTGCAGCTTAGTACAGGCTCAATGCACACAGCCAGTCAGATACAGTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCAGCTTAGTACAGGCTCAATGCACACAGCCAGTCAGATACAGTA  628

seq1  CTTGTGACGGACAACATTAATTATACACTTTTTTTTTTTTTGAAGTGTTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGACGGACAACATTAATTATACACTTTTTTTTTTTTTGAAGTGTTG  678

seq1  AGGTGGCTTCTTTATTCTCGGGATGGGACTGAGGCACATGTTCTGTTTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCTTCTTTATTCTCGGGATGGGACTGAGGCACATGTTCTGTTTTT  728

seq1  GAGATAGAGTCTTAATCTGTCGCACGGGTTGTTCCAGAATGTCCTAGAGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGAGTCTTAATCTGTCGCACGGGTTGTTCCAGAATGTCCTAGAGT  778

seq1  AAATAGCTCAGGATGGCCTTGAACCTGATAACTCCCTTCTATCTCAGAGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCTCAGGATGGCCTTGAACCTGATAACTCCCTTCTATCTCAGAGT  828

seq1  CTAGAATACTAGAACTTGTGATCCACCATGGCTGGCTTAAAAGAGGTGAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATACTAGAACTTGTGATCCACCATGGCTGGCTTAAAAGAGGTGAA  878

seq1  GTTTAAATTTTAATTACCCTTTATTATTTCAGGAGGTGAGCATAACTATG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATTTTAATTACCCTTTATTATTTCAGGAGGTGAGCATAACTATG  928

seq1  ATTTTATGGACAAAGATTTGAGGCACAAAGAGATCTAGTGACTTTCCTAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGGACAAAGATTTGAGGCACAAAGAGATCTAGTGACTTTCCTAA  978

seq1  TGTCACAGGACAATTAAGTGGTGATGCAGGGACTTGAACCCAGGACACCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAGGACAATTAAGTGGTGATGCAGGGACTTGAACCCAGGACACCT  1028

seq1  GGCCCCATGTTCTCATTCCCCTGCTCTACAGTGCAGATGACCCTGCAGTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCATGTTCTCATTCCCCTGCTCTACAGTGCAGATGACCCTGCAGTT  1078

seq1  AGGACACCAATGACAAGCTTCAGGGCCAGGTTGCCAAGAGTTGCATCCCG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACCAATGACAAGCTTCAGGGCCAGGTTGCCAAGAGTTGCATCCCG  1128

seq1  ACTATTCATCCTTCGCTGCAGACTCATTCTGTTTCCTAAAGGAAATGAGA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCATCCTTCGCTGCAGACTCATTCTGTTTCCTAAAGGAAATGAGA  1178

seq1  GATTGCTGGAATTC  1208
      ||||||||||||||
seq2  GATTGCTGGAATTC  1192

seq1: chr7_30080453_30080821
seq2: B6Ng01-237A11.g_67_435

seq1  GAATTCAGTCTCTGGGACCCACATGATGGAAGACCAGAACAAGCCCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTCTGGGACCCACATGATGGAAGACCAGAACAAGCCCCAAA  50

seq1  GGCTGCTCCTCAGATCCTTCACATGTGCACTTCATGCAGGAATAAGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTCCTCAGATCCTTCACATGTGCACTTCATGCAGGAATAAGAGAC  100

seq1  CAGCCTGGTCTACGCAGGGAGTCTGAGGCTAGCTATGGCTATGTAGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGTCTACGCAGGGAGTCTGAGGCTAGCTATGGCTATGTAGTAAG  150

seq1  GCAGTCTCTCAGAAAGGGCTGCACACCTTTTTTTTTTTTTTTTTTTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTCTCAGAAAGGGCTGCACACCTTTTTTTTTTTTTTTTTTTTGGA  200

seq1  GACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGA  250

seq1  CCAGGCTTGGGTTTGAACTCAGAAATCCGCCTGCCTCTGCCTCTGCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTTGGGTTTGAACTCAGAAATCCGCCTGCCTCTGCCTCTGCCTCC  300

seq1  CGAGTGCTGGGATTAAAGGCGTGCGCCACCAGGCCTGGCGGCTGTGCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGCTGGGATTAAAGGCGTGCGCCACCAGGCCTGGCGGCTGTGCACC  350

seq1  TTTAATATGAGTGAGCAGA  369
      |||||||||||||||||||
seq2  TTTAATATGAGTGAGCAGA  369