BAC Information

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BAC

Clone NameB6Ng01-238K19
Chromosome7 (Build37)
Map Location 10,623,597 - 10,624,829
singlet/doubletsinglet
Overlap geneEG434117
Upstream geneLOC100042810, LOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605
Downstream geneEG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238K19.bB6Ng01-238K19.g
ACCGA049307GA049308
length1,214777
definitionB6Ng01-238K19.b B6Ng01-238K19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgagtagctcttatacttcttgtcccagtagaggacagagact
caatgtgtcacagggaataaattcataaaatagtcagtgatctcagaaaa
cagtgagtgtagtgttttgtagttataaaatagaccaaaccacattgtgg
tttatgaatgtattttctctgatttaaataatctacttgatatcaacata
gaacaaaaaaatggctaagggcatttttgcgttctataacattatttttt
attttacatttcatattccattccctgtgcccacatacaccatccaatac
ttcacattccacacattctccccaccccaactgtcttcatgttgatcccc
ccatcctcccccacacctgacctctaaattccctatggcctccaggcttt
tgagtgttaggtgcatcatttctgtatgatcacagacatggtagtcctct
cctgtatatgaattgagggacccatatcaactggtgtatgctctctgttt
gattatccagtgtctgagagatctctggggtccagattaatttagagtgc
tggtccttctgcaagatatcctttcccctgagctgctttaagccttccct
aattcaagggatagttgcttctgaccattgtttgggtgcaaataactatt
taggagggcagtcatgatagatcctttttgtgagtgctccagagcctcag
taaaatgtgaggcaatacgacctcctcttgacctagatcccactttgggc
ctgtcattggaccttcttttcctcagctcctctccatttcatccttgcat
tcagacaggaacaattatgggtcagagatgtgactatgggatgggaaccc
catcactcacttgatgtcttgtcttcccgctagaggtgggctctgtacgt
tccctctatctaatgtagtacatttcatctaaggtctgggacctcccaag
tctctggtgcattttggtgggtccacccaccctcctattacttgaggtta
cctgttatattctttttgctggtcctcaaggcttgggttcccctgtcacc
gacacacttccaacagccctttcttaataacatcataatgaatacaacgt
tactagaacttatgaaaatgccttggttctcgtaattttctatgaactat
gattgagacatggtcaaggccatcctccaatattccgaagctctaaaggc
acgcattgcaagac
gaattctttatatatattggatattattcccctatcaggtataggattgg
taaagatcttttcccaattatcctgtcccgcgggattcagttatttgtgg
gtgtgagggggaccgcaaacctggaaggaaatgggaggaagaaaaagaag
agcaggagaccaggaaggatacctatcgaggtctattatgctgaggtgcc
ttctttttaaagcatacatcacagggaatatgggaggggtcgagggagaa
ttatacaaataacaaagaagtgggcaactgctgacatgggggccgaagtc
aggcgccaggcagtgggcactctgcatcttatctctggaacatagatcct
ccttgacagccttgggggtcaggctgggctcaggtgtaactcatgtcctt
ggatggcaggggaactcaggaagagataggaaagaggggactataattta
gcttttacagcctcaggtgccaagaaaggaatagggaggaagggggttga
taaccagctcttagtacaaggccatttggtctgttagggagattgtgaag
ggctcactttctcacgggatggtctctgacacccaatctgtttgttgatg
ttttgtcttactaacatactttgactaaacagaagctttgcaagtttttt
atgaggtctcatttgtcaattttttgatgttacagcataagccactgctg
ttctgttcaggaattttccctctggacccatatccttgaggtttttcccc
acattctctactacaagtttaagtgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_10623597_10624829
seq2: B6Ng01-238K19.b_46_1259 (reverse)

seq1  GTCTTGCAATGC-TGCCTTT-GATGCTGAGAATGTAATGTGAAGGAAATT  48
      |||||||||||| ||||||| ||   |  |||| |    || ||||   |
seq2  GTCTTGCAATGCGTGCCTTTAGAGCTTCGGAATAT----TGGAGGA---T  43

seq1  GCTGCTGAGCATTGCTTTCAATTCATAATGTCCATAAAAATTTAAAGGAA  98
      |    ||| |||   | |||| |||||  || |||| ||| ||      |
seq2  GGCCTTGACCAT--GTCTCAA-TCATA--GTTCATAGAAAATT------A  82

seq1  AGAAAACCAAGCAATTTTTTCTTA--GTCTAGTTAACGTTTTGTATCATT  146
       || |||||||  |  ||||| ||   ||||| |||||  ||||||   |
seq2  CGAGAACCAAGGCA--TTTTCATAAGTTCTAG-TAACG--TTGTATTCAT  127

seq1  TATGATGTTATTAGAAAGGGGCTTGTGG-AGTGTGTCGGTGACAGGGGAA  195
      |||||||||||||  || |||||  ||| |||||||||||||||||||||
seq2  TATGATGTTATTAAGAAAGGGCTGTTGGAAGTGTGTCGGTGACAGGGGAA  177

seq1  -CCAAGCCCTGAGGACCAGCAAAAAGAATATAAACAGGTAACCTCAAGTA  244
       ||||||| |||||||||||||||||||||| ||||||||||||||||||
seq2  CCCAAGCCTTGAGGACCAGCAAAAAGAATAT-AACAGGTAACCTCAAGTA  226

seq1  ATAGGAGGGTGGGTGGACCCACCAAAATGCACCAGAGACTTGGGAGGTCC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGGGTGGGTGGACCCACCAAAATGCACCAGAGACTTGGGAGGTCC  276

seq1  CAGACCTTAGATGAAATGTACTACATTAGATAGAGGGAACGTACAGAGCC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTTAGATGAAATGTACTACATTAGATAGAGGGAACGTACAGAGCC  326

seq1  CACCTCTAGCGGGAAGACAAGACATCAAGTGAGTGATGGGGTTCCCATCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTAGCGGGAAGACAAGACATCAAGTGAGTGATGGGGTTCCCATCC  376

seq1  CATAGTCACATCTCTGACCCATAATTGTTCCTGTCTGAATGCAAGGATGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCACATCTCTGACCCATAATTGTTCCTGTCTGAATGCAAGGATGA  426

seq1  AATGGAGAGGAGCCTGAGGAAAAGAAGGTCCAATGACAGGCCCAAAGTGG  494
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATGGAGAGGAG-CTGAGGAAAAGAAGGTCCAATGACAGGCCCAAAGTGG  475

seq1  GATCTAGGTCAAGAGGAGGTCGTATTGCCTCACATTTTACTGAGGCTCTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGGTCAAGAGGAGGTCGTATTGCCTCACATTTTACTGAGGCTCTG  525

seq1  GAGCACTCACAAAAAGGATCTATCATGACTGCCCTCCTAAATAGTTATTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTCACAAAAAGGATCTATCATGACTGCCCTCCTAAATAGTTATTT  575

seq1  GCACCCAAACAATGGTCAGAAGCAACTATCCCTTGAATTAGGGAAGGCTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCAAACAATGGTCAGAAGCAACTATCCCTTGAATTAGGGAAGGCTT  625

seq1  AAAGCAGCTCAGGGGAAAGGATATCTTGCAGAAGGACCAGCACTCTAAAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGCTCAGGGGAAAGGATATCTTGCAGAAGGACCAGCACTCTAAAT  675

seq1  TAATCTGGACCCCAGAGATCTCTCAGACACTGGATAATCAAACAGAGAGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGGACCCCAGAGATCTCTCAGACACTGGATAATCAAACAGAGAGC  725

seq1  ATACACCAGTTGATATGGGTCCCTCAATTCATATACAGGAGAGGACTACC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCAGTTGATATGGGTCCCTCAATTCATATACAGGAGAGGACTACC  775

seq1  ATGTCTGTGATCATACAGAAATGATGCACCTAACACTCAAAAGCCTGGAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTGATCATACAGAAATGATGCACCTAACACTCAAAAGCCTGGAG  825

seq1  GCCATAGGGAATTTAGAGGTCAGGTGTGGGGGAGGATGGGGGGATCAACA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAGGGAATTTAGAGGTCAGGTGTGGGGGAGGATGGGGGGATCAACA  875

seq1  TGAAGACAGTTGGGGTGGGGAGAATGTGTGGAATGTGAAGTATTGGATGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAGTTGGGGTGGGGAGAATGTGTGGAATGTGAAGTATTGGATGG  925

seq1  TGTATGTGGGCACAGGGAATGGAATATGAAATGTAAAATAAAAAATAATG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGGGCACAGGGAATGGAATATGAAATGTAAAATAAAAAATAATG  975

seq1  TTATAGAACGCAAAAATGCCCTTAGCCATTTTTTTGTTCTATGTTGATAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAACGCAAAAATGCCCTTAGCCATTTTTTTGTTCTATGTTGATAT  1025

seq1  CAAGTAGATTATTTAAATCAGAGAAAATACATTCATAAACCACAATGTGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGATTATTTAAATCAGAGAAAATACATTCATAAACCACAATGTGG  1075

seq1  TTTGGTCTATTTTATAACTACAAAACACTACACTCACTGTTTTCTGAGAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCTATTTTATAACTACAAAACACTACACTCACTGTTTTCTGAGAT  1125

seq1  CACTGACTATTTTATGAATTTATTCCCTGTGACACATTGAGTCTCTGTCC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACTATTTTATGAATTTATTCCCTGTGACACATTGAGTCTCTGTCC  1175

seq1  TCTACTGGGACAAGAAGTATAAGAGCTACTCAAGAATTC  1233
      |||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGGGACAAGAAGTATAAGAGCTACTCAAGAATTC  1214