BAC Information

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BAC

Clone NameB6Ng01-238O05
Chromosome7 (Build37)
Map Location 12,999,395 - 13,067,959
singlet/doubletdoublet
Overlap geneZfp551, EG666065, Zfp606
Upstream geneLOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11
Downstream gene2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238O05.bB6Ng01-238O05.g
ACCGA049463GA049464
length1,0921,144
definitionB6Ng01-238O05.b B6Ng01-238O05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,999,395 - 13,000,504)(13,066,824 - 13,067,959)
sequence
gaattcaatctcagaagcccacatggtagaatagaaacaactccaaaagc
tgccttctgacctccacacatgtaccacagtccatgtgcaccaagccaca
tatatgcacaataaagaaatgaaggattattttcatatccattaactcag
ttcctgtcccaatcaataccctattcactacttaacacacataaaatggc
tccagtacaaagcctgcagaagagattaccttcaagagtgctaggaatta
tgtgacatcccggtggaaaagtgaatagaattgttcaggtggcacaggaa
tatctggggttgtcataacacgtctcttcatgaagacttcttacctccca
aaaatcatagtaccttcagtgagtcaggaacacaataccaacagtctctc
ctgtgagggcagggacagcatgaaaacgagaccaataatccacactgctg
cttcctgcagctctaccataccttctcaaacagaaagtggggatgtctat
ggagttggcccaccccgtcatgctgacatcataggtcacctgatacgtca
taccacagaatgaacagagccttcaagatcaaaggagcataaacaaactt
ccttttcaaaagttagggcatagcaatgtgtagcaagcatttcacaagtt
ggtgagttccagcctagaaatattcatcaggagcacagtgtgagagcaaa
acctgtcctgaacaaggttgtctttcctagcaaagttaaaagcacaactc
ggaccacaccttctaaataagattgctgccctaaaaaggaaaggaggggt
ctccaaggctaaagccggagcagagtagagaggtctgaatctcaaagcac
ttagcagggataatcagactcataatcttccagtggtaagagtaacgggg
ttttaccacaggtactgcaaatgacataaatcagacatggctctaggcat
actaaaaactggatgagtctctcaaatttcccacatatctgaaatacctc
actctgagccagatgaatatctctgatcagagaggctctgagtcttcctt
ccagtgttactacactatgcaggcactttttttttttgagtc
gaattcaatgtctggaacgcacatgaaggagaaagccaactcttcaagct
gtcctcagaccactctacccccgtcccatctccacatgtgcacccccaca
catataaaaacaaatatattttcaaaatgattttaaattaataaccctta
aaacgtgccaagttgaagaagccagattcaaaatgtcatatgttatgatt
ccatttaaattaaatgcctagaccaggcaaatccacagagttggaaattg
acgagtggtttccagggactggaaataggaagaaagggagtgactactaa
gagatataaagaataaagagttctttttggggagacagaaatattctaga
atgagaagctggaagcaccattttgtgactatattaaaaaccaatgaact
gtacgacttaaaagggtcaactttctagtctgtagatattatctcaataa
agctattatatttttaaaagagaaaaaaaaatggctggatctgatgaaga
acctagatgtgagggagaacagtgacagtattcccataccaacactcctg
tcctgtgctctctgaggagttacccagggtgctcttacactcccagagcc
ctgctggactccccgtggatcttgctgatcttactctatctacttccagc
ttccagaccctgatcagactgaagcctttgacaccagcctgcctctcaca
gcctctcccctgcacacacctttccagacaaattctggatcatggtgcct
cgtgaagccaacaattctgaggtttgtaggttggcaacaggagtgcagcc
cacctgggttcttcctagactctcctaactaaaatcagcctgaatgcaga
taccagtcacagagttcaccccagatctttaacatacccgtggagcttca
ggcaggccagacagctgcttaccaggatgtgcccacctgatgcattgctt
ttacctctttgcttattagtcaaggtaacgtccccctttcacaattctgt
aacccccactgacctctatgcagactatgtcctcatcttcttcaaggcat
cggtggactgaactgtagcagagtttaagggctttccctccatcttcagg
cttctttgttgtcaggagcatgactagaccagcctaacttgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_12999395_13000504
seq2: B6Ng01-238O05.b_47_1138

seq1  GAATTCAATCTCAGAAGCCCACATGGTAGAATAGAAACAACTCCAAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTCAGAAGCCCACATGGTAGAATAGAAACAACTCCAAAAGC  50

seq1  TGCCTTCTGACCTCCACACATGTACCACAGTCCATGTGCACCAAGCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTGACCTCCACACATGTACCACAGTCCATGTGCACCAAGCCACA  100

seq1  TATATGCACAATAAAGAAATGAAGGATTATTTTCATATCCATTAACTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCACAATAAAGAAATGAAGGATTATTTTCATATCCATTAACTCAG  150

seq1  TTCCTGTCCCAATCAATACCCTATTCACTACTTAACACACATAAAATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTCCCAATCAATACCCTATTCACTACTTAACACACATAAAATGGC  200

seq1  TCCAGTACAAAGCCTGCAGAAGAGATTACCTTCAAGAGTGCTAGGAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTACAAAGCCTGCAGAAGAGATTACCTTCAAGAGTGCTAGGAATTA  250

seq1  TGTGACATCCCGGTGGAAAAGTGAATAGAATTGTTCAGGTGGCACAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACATCCCGGTGGAAAAGTGAATAGAATTGTTCAGGTGGCACAGGAA  300

seq1  TATCTGGGGTTGTCATAACACGTCTCTTCATGAAGACTTCTTACCTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGGGTTGTCATAACACGTCTCTTCATGAAGACTTCTTACCTCCCA  350

seq1  AAAATCATAGTACCTTCAGTGAGTCAGGAACACAATACCAACAGTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATAGTACCTTCAGTGAGTCAGGAACACAATACCAACAGTCTCTC  400

seq1  CTGTGAGGGCAGGGACAGCATGAAAACGAGACCAATAATCCACACTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGGGCAGGGACAGCATGAAAACGAGACCAATAATCCACACTGCTG  450

seq1  CTTCCTGCAGCTCTACCATACCTTCTCAAACAGAAAGTGGGGATGTCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGCAGCTCTACCATACCTTCTCAAACAGAAAGTGGGGATGTCTAT  500

seq1  GGAGTTGGCCCACCCCGTCATGCTGACATCATAGGTCACCTGATACGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGGCCCACCCCGTCATGCTGACATCATAGGTCACCTGATACGTCA  550

seq1  TACCACAGAATGAACAGAGCCTTCAAGATCAAAGGAGCATAAACAAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAGAATGAACAGAGCCTTCAAGATCAAAGGAGCATAAACAAACTT  600

seq1  CCTTTTCAAAAGTTAGGGCATAGCAATGTGTAGCAAGCATTTCACAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCAAAAGTTAGGGCATAGCAATGTGTAGCAAGCATTTCACAAGTT  650

seq1  GGTGAGTTCCAGCCTAGAAATATTCATCAGGAGCACAGTGTGAGAGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTTCCAGCCTAGAAATATTCATCAGGAGCACAGTGTGAGAGCAAA  700

seq1  ACCTGTCCTGAACAAGGTTGTCTTTCCTAGCAAAGTTAAAAGCACAACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCCTGAACAAGGTTGTCTTTCCTAGCAAAGTTAAAAGCACAACTC  750

seq1  GGACCACACCTTCTAAATAAGATTGCTGCCCTAAAAAGGAAAGGAGGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACACCTTCTAAATAAGATTGCTGCCCTAAAAAGGAAAGGAGGGGT  800

seq1  CTCCAAGGCTAAGGCCGGAGCAGAGTAGAGAGGTCTGAATCTCAAAGCAC  850
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGGCTAAAGCCGGAGCAGAGTAGAGAGGTCTGAATCTCAAAGCAC  850

seq1  TTAGCAGGGATAATCAGACTCATAATCTTCCAGGTGGTAAGAGTAACGGG  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTAGCAGGGATAATCAGACTCATAATCTTCCA-GTGGTAAGAGTAACGGG  899

seq1  GTTTTTACCACAGGTACTGCAAATGACATAAATCAGGACATGGCTCTAGG  950
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  G-TTTTACCACAGGTACTGCAAATGACATAAATCA-GACATGGCTCTAGG  947

seq1  CATACTAAAAACTGGAATGAGTCTCCTCAAAATTTCCCACATATCTGAAA  1000
      ||||||||||||||| |||||||| ||| |||||||||||||||||||||
seq2  CATACTAAAAACTGG-ATGAGTCT-CTC-AAATTTCCCACATATCTGAAA  994

seq1  TAACCTCCACTTCTGAAGCCCAGATGAATAATCTCTGAATTCAGAGAGGG  1050
      | |||| ||| |||||   |||||||||| ||||||||  ||||||| ||
seq2  T-ACCT-CAC-TCTGA--GCCAGATGAAT-ATCTCTGA--TCAGAGA-GG  1035

seq1  CTCTGAGTCT--CCTCCAGTGTTACTACACTTATTAAACAGCACTTTTTT  1098
      ||||||||||  | |||||||||||||||| |||  |   ||||  ||||
seq2  CTCTGAGTCTTCCTTCCAGTGTTACTACAC-TATGCA--GGCAC--TTTT  1080

seq1  TTTTTTTGAGTC  1110
      ||||||||||||
seq2  TTTTTTTGAGTC  1092

seq1: chr7_13066824_13067959
seq2: B6Ng01-238O05.g_67_1210 (reverse)

seq1  TTAC-AGTTAGCCTGGGTCTAGTCATGCT-CTGACA--CAAGAAGCCTGA  46
      |||| |||||| || |||||||||||||| ||||||   |||||||||||
seq2  TTACAAGTTAGGCT-GGTCTAGTCATGCTCCTGACAACAAAGAAGCCTGA  49

seq1  GATGTGGAGGG-AAGCCC-TAAACTCTGCTACAGCTCAGTCCACCGATGC  94
       |  ||||||| |||||| ||||||||||||||| |||||||||||||||
seq2  -AGATGGAGGGAAAGCCCTTAAACTCTGCTACAGTTCAGTCCACCGATGC  98

seq1  CTTGA--GAGATGA-GACATAGTCTGCATAGAGGTCAGT-GGGGTTACAG  140
      |||||   |||||| |||||||||||||||||||||||| ||||||||||
seq2  CTTGAAGAAGATGAGGACATAGTCTGCATAGAGGTCAGTGGGGGTTACAG  148

seq1  AATTGTG-AAGGGGGACGTTACCTTGACTAATAAGCAAAGAGGTAAAAGC  189
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGAAAGGGGGACGTTACCTTGACTAATAAGCAAAGAGGTAAAAGC  198

seq1  AATGCATCAGGTGGGCACATCCTGGTAAGCAGCTGTCTGGCCTGCCTGAA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATCAGGTGGGCACATCCTGGTAAGCAGCTGTCTGGCCTGCCTGAA  248

seq1  GCTCCACGGGTATGTTAAAGATCTGGGGTGAACTCTGTGACTGGTATCTG  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACGGGTATGTTAAAGATCTGGGGTGAACTCTGTGACTGGTATCTG  298

seq1  CATTCAGGCTGATTTTAGTTAGGAGAGTCTAGGAAGAACCCAGGTGGGCC  339
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CATTCAGGCTGATTTTAGTTAGGAGAGTCTAGGAAGAACCCAGGTGGG-C  347

seq1  TGCACTCCTGTTGCCAACCTACAAACCTCAGAATTGTTGGCTTCACGAGG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCCTGTTGCCAACCTACAAACCTCAGAATTGTTGGCTTCACGAGG  397

seq1  CACCATGATCCAGAATTTGTCTGGAAAGGTGTGTGCAGGGGAGAGGCTGT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGATCCAGAATTTGTCTGGAAAGGTGTGTGCAGGGGAGAGGCTGT  447

seq1  GAGAGGCAGGCTGGTGTCAAAGGCTTCAGTCTGATCAGGGTCTGGAAGCT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCAGGCTGGTGTCAAAGGCTTCAGTCTGATCAGGGTCTGGAAGCT  497

seq1  GGAAGTAGATAGAGTAAGATCAGCAAGATCCACGGGGAGTCCAGCAGGGC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTAGATAGAGTAAGATCAGCAAGATCCACGGGGAGTCCAGCAGGGC  547

seq1  TCTGGGAGTGTAAGAGCACCCTGGGTAACTCCTCAGAGAGCACAGGACAG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGTGTAAGAGCACCCTGGGTAACTCCTCAGAGAGCACAGGACAG  597

seq1  GAGTGTTGGTATGGGAATACTGTCACTGTTCTCCCTCACATCTAGGTTCT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTGGTATGGGAATACTGTCACTGTTCTCCCTCACATCTAGGTTCT  647

seq1  TCATCAGATCCAGCCATTTTTTTTTCTCTTTTAAAAATATAATAGCTTTA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGATCCAGCCATTTTTTTTTCTCTTTTAAAAATATAATAGCTTTA  697

seq1  TTGAGATAATATCTACAGACTAGAAAGTTGACCCTTTTAAGTCGTACAGT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATAATATCTACAGACTAGAAAGTTGACCCTTTTAAGTCGTACAGT  747

seq1  TCATTGGTTTTTAATATAGTCACAAAATGGTGCTTCCAGCTTCTCATTCT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGTTTTTAATATAGTCACAAAATGGTGCTTCCAGCTTCTCATTCT  797

seq1  AGAATATTTCTGTCTCCCCAAAAAGAACTCTTTATTCTTTATATCTCTTA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTTCTGTCTCCCCAAAAAGAACTCTTTATTCTTTATATCTCTTA  847

seq1  GTAGTCACTCCCTTTCTTCCTATTTCCAGTCCCTGGAAACCACTCGTCAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCACTCCCTTTCTTCCTATTTCCAGTCCCTGGAAACCACTCGTCAA  897

seq1  TTTCCAACTCTGTGGATTTGCCTGGTCTAGGCATTTAATTTAAATGGAAT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAACTCTGTGGATTTGCCTGGTCTAGGCATTTAATTTAAATGGAAT  947

seq1  CATAACATATGACATTTTGAATCTGGCTTCTTCAACTTGGCACGTTTTAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACATATGACATTTTGAATCTGGCTTCTTCAACTTGGCACGTTTTAA  997

seq1  GGGTTATTAATTTAAAATCATTTTGAAAATATATTTGTTTTTATATGTGT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATTAATTTAAAATCATTTTGAAAATATATTTGTTTTTATATGTGT  1047

seq1  GGGGGTGCACATGTGGAGATGGGACGGGGGTAGAGTGGTCTGAGGACAGC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGCACATGTGGAGATGGGACGGGGGTAGAGTGGTCTGAGGACAGC  1097

seq1  TTGAAGAGTTGGCTTTCTCCTTCATGTGCGTTCCAGACATTGAATTC  1136
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAGTTGGCTTTCTCCTTCATGTGCGTTCCAGACATTGAATTC  1144