BAC Information

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BAC

Clone NameB6Ng01-239A03
Chromosome7 (Build37)
Map Location 8,340,113 - 8,341,235
singlet/doubletsinglet
Overlap genenone
Upstream geneVmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170, LOC100042662, LOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695
Downstream geneLOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989, LOC100041998, LOC100042009, LOC100042754, V2r14, EG628128, EG434109, LOC434110, EG628145, EG545909, LOC100042039, LOC100042781, LOC665539, LOC100042795, LOC100042060
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239A03.bB6Ng01-239A03.g
ACCGA049550GA049551
length1,1911,114
definitionB6Ng01-239A03.b B6Ng01-239A03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccataactaaacatgataaaagcaatctacagcaaacca
gtagccaacatcacagtaattgttgagaagcttgaagcaatcccactaaa
atcagggactacacaaggctgcccactttctgcctacctattcaacattg
tacttgaagtcctagccagagcaattccacaacaaaaggagatcgagcag
atacaaattggaaaggaagaagtcaaattatcactttttgcagatgatat
gataatatatataagtgacactaaaaattccaccagagaactcctaaacc
tgataaacagcttcggtgaagtaactggatataaattaactcaaacaagt
caatggcctttctctacacaaataataaacaggctgagaaagaaattagg
gaaacaacacccttctcaatagtcacaaataatataaaatatcttggtgt
gatcctaactaaggaagttaaagatctgtatgatcaaaacttcaagtctc
tgaagaaataaattaaagaagatctcagaaaaaggaaagatctcccatgc
tcatggatgtgcaggatcaacattgtaaaaatggctctcttgccaaaagc
aatctacagattcaatgcaatccccatcaaaattccaactcaattcttca
acgaattagaaagagcaatctccaaatttatctggagtaacaaaaaacct
aggatagcaaaaactcttctcaaggataaaagtacctctggtagaatcac
catgcctgacctaaagctttactacagagcaattgtgataaagactgcat
ggtactggtgtatcgacagacaagtagaacaatggaatagaattgaagac
ccagaaatgaacccacacaccgatgatcacttgatcttcaacacgggagc
taaaaacatccagtggaagaaagacagcattttcaacaaatagtgtagca
caactgggttgtatcatgtagagataaaattgttccattcttatatcctt
gtactaagtcaaatctaagtggatcaaggacttcacataaaaccagagac
cctgaacttatatgagaaagtggggaagcctcgaagaatatggcacaggg
taaatccctgaatagacagcaatgctgtgctgtagatgaattgaccagtg
aactcaatgactcaagctctggcaggccagagaacctggtc
gaattcatcattttgtgtagaaaaatgagatccaagacacacagggttac
acatggaaaccatctaccaaatcatataatcaattagaaacacagactaa
ctaaataatcagcaaagatgaaatcagaatatattttctgatttccagta
ggagcacacacataacaaaatactgcctattttttcagctgttcttcaag
ctattggccaatagtctaaggaggaaatattccttttctgctgtcaaata
caaatatattatatccaacactggaaatcagccaggggcccctgtggatg
aattgggaatagttgcaagaagcagaggaggaggacaacccatagaaaca
caagcagtctcatcaaacctggacaagcaagatctctcagacattgagcc
tctaaccagagatcatacactagctgatgtgaagcccccaacaaatatgc
agcataagactgcctggtctagcatcagtgggagagacacacctaacccc
agagagacttaagtccccagggattgggaagggctgggcgttggggaggt
agagatatcatcttggagatgggggaagagtttttagatgaggaagtgtc
agggggcaaaccaggagggggataaccactagactgtaaaaaaatattga
gtaataataaataaaaaatgaaatgaaataagcttgtagctatggcaaca
tgctattcatattgtagttatggaagggataggtaaaactactgacattt
gcatgaacctaatttctttcagagatttccctctatgtgcagttctgatt
gaggtcctggcctcagaaaattctggaaaacagaatgagagccagatgct
ttaattatgctgctttctagaaaacaacattttcaaaaggacaattgagt
gtttgcggctacactaaatatttcacatttatcaattctcttcccataaa
gggaaccaaatgggtctaaaatgcattaccaaaaacaccacttccctcag
tcagtcttcatggaaatatgatcattagcagtgtcctttagaacacattc
ttcataacattcacatttacttatgaaaatcgtgagatgggcattgtttc
caagaaagatttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_8340113_8341235
seq2: B6Ng01-239A03.g_63_1176

seq1  GAATTCATCATTTTGTGTAGAAAAATGAGATCCAAGACACACAGGGTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATTTTGTGTAGAAAAATGAGATCCAAGACACACAGGGTTAC  50

seq1  ACATGGAAACCATCTACCAAATCATATAATCAATTAGAAACACAGACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAAACCATCTACCAAATCATATAATCAATTAGAAACACAGACTAA  100

seq1  CTAAATAATCAGCAAAGATGAAATCAGAATATATTTTCTGATTTCCAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAATCAGCAAAGATGAAATCAGAATATATTTTCTGATTTCCAGTA  150

seq1  GGAGCACACACATAACAAAATACTGCCTATTTTTTCAGCTGTTCTTCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCACACACATAACAAAATACTGCCTATTTTTTCAGCTGTTCTTCAAG  200

seq1  CTATTGGCCAATAGTCTAAGGAGGAAATATTCCTTTTCTGCTGTCAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGGCCAATAGTCTAAGGAGGAAATATTCCTTTTCTGCTGTCAAATA  250

seq1  CAAATATATTATATCCAACACTGGAAATCAGCCAGGGGCCCCTGTGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATATTATATCCAACACTGGAAATCAGCCAGGGGCCCCTGTGGATG  300

seq1  AATTGGGAATAGTTGCAAGAAGCAGAGGAGGAGGACAACCCATAGAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGAATAGTTGCAAGAAGCAGAGGAGGAGGACAACCCATAGAAACA  350

seq1  CAAGCAGTCTCATCAAACCTGGACAAGCAAGATCTCTCAGACATTGAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGTCTCATCAAACCTGGACAAGCAAGATCTCTCAGACATTGAGCC  400

seq1  TCTAACCAGAGATCATACACTAGCTGATGTGAAGCCCCCAACAAATATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCAGAGATCATACACTAGCTGATGTGAAGCCCCCAACAAATATGC  450

seq1  AGCATAAGACTGCCTGGTCTAGCATCAGTGGGAGAGACACACCTAACCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAGACTGCCTGGTCTAGCATCAGTGGGAGAGACACACCTAACCCC  500

seq1  AGAGAGACTTAAGTCCCCAGGGATTGGGAAGGGCTGGGCGTTGGGGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACTTAAGTCCCCAGGGATTGGGAAGGGCTGGGCGTTGGGGAGGT  550

seq1  AGAGATATCATCTTGGAGATGGGGGAAGAGTTTTTAGATGAGGAAGTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATATCATCTTGGAGATGGGGGAAGAGTTTTTAGATGAGGAAGTGTC  600

seq1  AGGGGGCAAACCAGGAGGGGGATAACCACTAGACTGTAAAAAAATATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCAAACCAGGAGGGGGATAACCACTAGACTGTAAAAAAATATTGA  650

seq1  GTAATAATAAATAAAAAATGAAATGAAATAAGCTTGTAGCTATGGCAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAATAAATAAAAAATGAAATGAAATAAGCTTGTAGCTATGGCAACA  700

seq1  TGCTATTCATATTGTAGTTATGGAAGGGATAGGTAAAACTACTGACATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTCATATTGTAGTTATGGAAGGGATAGGTAAAACTACTGACATTT  750

seq1  GCATGAACCTAATTTCTTTCAGAGATTTCCCTCTATGTGCAGTTCTGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAACCTAATTTCTTTCAGAGATTTCCCTCTATGTGCAGTTCTGATT  800

seq1  GAGGTCCTGGCCTCAGAAAATTCTGGAAAACAGAATGAGAGCCAGATGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCTGGCCTCAGAAAATTCTGGAAAACAGAATGAGAGCCAGATGCT  850

seq1  TTAATTATGCTGCTTTCTAGAAAACAACATTTTCAAAAGGACAATTGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATGCTGCTTTCTAGAAAACAACATTTTCAAAAGGACAATTGAGT  900

seq1  GTTTGCGGCTACACTAAATATTTCACATTTATCAATTCTCTTCCCATAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCGGCTACACTAAATATTTCACATTTATCAATTCTCTTCCCATAAA  950

seq1  GGGAACCAAATGGGTCTAAAATGCATTACCAAAAACAACCACTTCCCTCA  1000
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGGAACCAAATGGGTCTAAAATGCATTACCAAAAAC-ACCACTTCCCTCA  999

seq1  GTCAGTCTTCATGGAAATATGATCATTAGCAGTGTCCCTTTAAGGAACAC  1050
      ||||||||||||||||||||||||||||||||||| ||||||  ||||||
seq2  GTCAGTCTTCATGGAAATATGATCATTAGCAGTGT-CCTTTA--GAACAC  1046

seq1  ATTCTTCATTAACATTCACATTTTACTTATTGAAAATTCGTGGAAGAT-G  1099
      |||||||| ||||||||||| |||||||| |||||| |||||  |||| |
seq2  ATTCTTCA-TAACATTCACA-TTTACTTA-TGAAAA-TCGTG--AGATGG  1090

seq1  GCATTGTTTCAAAGAAAGATTTGA  1123
      |||||||||| |||||||||||||
seq2  GCATTGTTTCCAAGAAAGATTTGA  1114