BAC Information

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BAC

Clone NameB6Ng01-239B04
Chromosome7 (Build37)
Map Location 103,963,992 - 104,106,257
singlet/doubletdoublet
Overlap geneOdz4, Nars2
Upstream geneFrda-ps, EG666836, LOC670727, LOC666858
Downstream geneGab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239B04.bB6Ng01-239B04.g
ACCGA049598GA049599
length1,1061,190
definitionB6Ng01-239B04.b B6Ng01-239B04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,105,160 - 104,106,257)(103,963,992 - 103,965,161)
sequence
gaattcactcttttgactggcatggaactcaaagagagccacatacatct
gcctccccagtgctgggataaaggaatatcaccaccacctcgcacatgta
gatttttgttgctgtttttgaagaggaggtcccatgtagtgaaaattttg
gtttctttaaaaaacagaaatagaagtgcagtttttttttttattcccag
atatggggatgtggggctgcttcagattgtccatagcagctatgagttgc
ctcctgctttagcagggttaaacagagccatgcaactgttaccctcacag
atatcatcagaggaacacaaacctctttttaaaggtggtcacagtggctc
agtatgctggtgagagtaagaagggccctcagaagcatttaaatgtgtgg
tcctcagttggtggaactgtttgaagattaggaggtatggctttgtgtca
ctgaaggattaggaggtgggctttgagggtacaaaagcccaagccattcc
cagttagtgcactcattctttctacctcatacttgtggaacaaggtgaag
ctctcaatgactgctccagcagagtgcatgcctgctgccatgctccccaa
catgatggtatggactcttaacatgaaactattgcgcaccccccaaaatg
ctcattcttctatacgttgctttggttaaggtatcacaacaatagaaacg
taattaagacagatttttgtctttctgcccaattgagacccatcagtctt
tgtaatatgcaatatgtaatatgtattatgtaatatgtaatatgtagtat
gttattcctaacagttccttggaatagcaaagtgctcttattctagcaga
attgtgttctgctccttagaggttatactttaacacaaaatgttattagt
tctgacatctgataatgagaccataaaagttccagttattctggacaagg
tgagatggctcaatggttaagagcactggcctgcctcttccagaggtcct
tgagttcaaatcccagcaaccacatggtagctcataaccatctgtaatgg
gaatctgatgccctcttctggtgtgtctgaaaacagctatcagtgtactt
cataac
gaattccaaggttcattaagaatgctattccagtgtttttaatctgtgag
acaaaaaaaaaaaaaaaatttgcccatatggttgaattgggagagtatta
ttggtttgttttgtcttcacgtgtggttggttgttctctgaattgaaaag
cagaaagcatcctgaatatgactaggaagcagctggtctcctaagcttct
gtggagttgctctgtgcctcttgaatgcctcagatttcacccaagggagc
tggctgctgagtgggcccagaggggcaagcactaggaccctgacactagc
ttagcaccagtttctccgtgagtctcagttgcagatgatagctaccttct
tcatctcttaccctgtgcaaattcctgcatgaaatgctatcacatgcatc
ttctcaaatgacacacagtgaccatccatgagaattcgtctcacccccat
ctcaaagacggtgaaatggtagttcctccatgcagagtgaccgtgaacta
tggaggtgatgcctcccttgcagggtcacagtaagaactacaggtttgac
tttaaagtgcctgtgattggtcaacataacacaaagatgaaaagcctggc
ccctggattcagattccaggctcttcttactgtgtgatgtccagtgagtt
actcaacttgttatttgtaagtgtcagctctcttcctgatcctttctgcc
cgaaatcacagggcattgtgtttatcataaaatatatatttatgtataac
tattttttcattgaaattttgccctctgtgaagttttttttctgtcttct
tgcacatggaggtaccatattttttttcatttctttgtgaatcttgacta
ttttttccaatttttctttatttaaaatctgtcttgcatgctgggtctgg
gtgattcacacccaattaattaggagactaaggcaagaagatcataagtt
ttaaggctagcatggggctaccaagtaagaccctggcccttgagaaagaa
atgtatcctaacattacatatttgtggaataaaaggtctaccatgtgcat
catttccactgcctcctccccaaccacacttgtaggcagaaaccatttac
atacaggtattgagtctaaggagaaatgccagttagattgagccttcaac
catccgattcgacagggagagctctagaccaggccaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_104105160_104106257
seq2: B6Ng01-239B04.b_47_1152 (reverse)

seq1  GTTATG-AGTACACTG-TAGCTGTTTTCAGACACACCAGAAGAGGGCATC  48
      |||||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  GTTATGAAGTACACTGATAGCTGTTTTCAGACACACCAGAAGAGGGCATC  50

seq1  AGA-TCCCATTACAGATGGTTATGAGCTACCATGTGGTTGCTGGGATTTG  97
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCCATTACAGATGGTTATGAGCTACCATGTGGTTGCTGGGATTTG  100

seq1  AACTC-AGGACCTCTGGAAGA-GCA-GCCAGTGCTCTTAACCATTGAGCC  144
      ||||| ||||||||||||||| ||| ||||||||||||||||||||||||
seq2  AACTCAAGGACCTCTGGAAGAGGCAGGCCAGTGCTCTTAACCATTGAGCC  150

seq1  ATCTCACC-TGTCCAGAATAACTGGAACTTTTATGGTCTCATTATCAGAT  193
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACCTTGTCCAGAATAACTGGAACTTTTATGGTCTCATTATCAGAT  200

seq1  GTCAGAACTAATAACATTTTGTGTTAAAGTATAACCTCTAAGGAGCAGAA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAACTAATAACATTTTGTGTTAAAGTATAACCTCTAAGGAGCAGAA  250

seq1  CACAATTCTGCTAGAATAAGAGCACTTTGCTATTCCAAGG-ACTGTTAGG  292
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CACAATTCTGCTAGAATAAGAGCACTTTGCTATTCCAAGGAACTGTTAGG  300

seq1  AATAACATACTACATATTACATATTACATAATACATATTACATATTGCAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACATACTACATATTACATATTACATAATACATATTACATATTGCAT  350

seq1  ATTACAAAGACTGATGGGTCTCAATTGGGCAGAAAGACAAAAATCTGTCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAAGACTGATGGGTCTCAATTGGGCAGAAAGACAAAAATCTGTCT  400

seq1  TAATTACGTTTCTATTGTTGTGATACCTTAACCAAAGCAACGTATAGAAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACGTTTCTATTGTTGTGATACCTTAACCAAAGCAACGTATAGAAG  450

seq1  AATGAGCATTTTGGGGGGTGCGCAATAGTTTCATGTTAAGAGTCCATACC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCATTTTGGGGGGTGCGCAATAGTTTCATGTTAAGAGTCCATACC  500

seq1  ATCATGTTGGGGAGCATGGCAGCAGGCATGCACTCTGCTGGAGCAGTCAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTTGGGGAGCATGGCAGCAGGCATGCACTCTGCTGGAGCAGTCAT  550

seq1  TGAGAGCTTCACCTTGTTCCACAAGTATGAGGTAGAAAGAATGAGTGCAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCTTCACCTTGTTCCACAAGTATGAGGTAGAAAGAATGAGTGCAC  600

seq1  TAACTGGGAATGGCTTGGGCTTTTGTACCCTCAAAGCCCACCTCCTAATC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGGAATGGCTTGGGCTTTTGTACCCTCAAAGCCCACCTCCTAATC  650

seq1  CTTCAGTGACACAAAGCCATACCTCCTAATCTTCAAACAGTTCCACCAAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTGACACAAAGCCATACCTCCTAATCTTCAAACAGTTCCACCAAC  700

seq1  TGAGGACCACACATTTAAATGCTTCTGAGGGCCCTTCTTACTCTCACCAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACCACACATTTAAATGCTTCTGAGGGCCCTTCTTACTCTCACCAG  750

seq1  CATACTGAGCCACTGTGACCACCTTTAAAAAGAGGTTTGTGTTCCTCTGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGAGCCACTGTGACCACCTTTAAAAAGAGGTTTGTGTTCCTCTGA  800

seq1  TGATATCTGTGAGGGTAACAGTTGCATGGCTCTGTTTAACCCTGCTAAAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCTGTGAGGGTAACAGTTGCATGGCTCTGTTTAACCCTGCTAAAG  850

seq1  CAGGAGGCAACTCATAGCTGCTATGGACAATCTGAAGCAGCCCCACATCC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGCAACTCATAGCTGCTATGGACAATCTGAAGCAGCCCCACATCC  900

seq1  CCATATCTGGGAATAAAAAAAAAAACTGCACTTCTATTTCTGTTTTTTAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCTGGGAATAAAAAAAAAAACTGCACTTCTATTTCTGTTTTTTAA  950

seq1  AGAAACCAAAATTTTCACTACATGGGACCTCCTCTTCAAAAACAGCAACA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCAAAATTTTCACTACATGGGACCTCCTCTTCAAAAACAGCAACA  1000

seq1  AAAATCTACATGTGCGAGGTGGTGGTGATATTCCTTTATCCCAGCACTGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTACATGTGCGAGGTGGTGGTGATATTCCTTTATCCCAGCACTGG  1050

seq1  GGAGGCAGATGTATGTGGCTCTCTTTGAGTTCCATGCCAGTCAAAAGAGT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGATGTATGTGGCTCTCTTTGAGTTCCATGCCAGTCAAAAGAGT  1100

seq1  GAATTC  1098
      ||||||
seq2  GAATTC  1106

seq1: chr7_103963992_103965161
seq2: B6Ng01-239B04.g_66_1255

seq1  GAATTCCAAGGTTCATTAAGAATGCTATTCCAGTGTTTTTAATCTGTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGTTCATTAAGAATGCTATTCCAGTGTTTTTAATCTGTGAG  50

seq1  ACAAAAAAAAAAAAAAAATTTGCCCATATGGTTGAATTGGGAGAGTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAAAAAAAAAAATTTGCCCATATGGTTGAATTGGGAGAGTATTA  100

seq1  TTGGTTTGTTTTGTCTTCACGTGTGGTTGGTTGTTCTCTGAATTGAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGTTTTGTCTTCACGTGTGGTTGGTTGTTCTCTGAATTGAAAAG  150

seq1  CAGAAAGCATCCTGAATATGACTAGGAAGCAGCTGGTCTCCTAAGCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCATCCTGAATATGACTAGGAAGCAGCTGGTCTCCTAAGCTTCT  200

seq1  GTGGAGTTGCTCTGTGCCTCTTGAATGCCTCAGATTTCACCCAAGGGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTTGCTCTGTGCCTCTTGAATGCCTCAGATTTCACCCAAGGGAGC  250

seq1  TGGCTGCTGAGTGGGCCCAGAGGGGCAAGCACTAGGACCCTGACACTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCTGAGTGGGCCCAGAGGGGCAAGCACTAGGACCCTGACACTAGC  300

seq1  TTAGCACCAGTTTCTCCGTGAGTCTCAGTTGCAGATGATAGCTACCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACCAGTTTCTCCGTGAGTCTCAGTTGCAGATGATAGCTACCTTCT  350

seq1  TCATCTCTTACCCTGTGCAAATTCCTGCATGAAATGCTATCACATGCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTTACCCTGTGCAAATTCCTGCATGAAATGCTATCACATGCATC  400

seq1  TTCTCAAATGACACACAGTGACCATCCATGAGAATTCGTCTCACCCCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAATGACACACAGTGACCATCCATGAGAATTCGTCTCACCCCCAT  450

seq1  CTCAAAGACGGTGAAATGGTAGTTCCTCCATGCAGAGTGACCGTGAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGACGGTGAAATGGTAGTTCCTCCATGCAGAGTGACCGTGAACTA  500

seq1  TGGAGGTGATGCCTCCCTTGCAGGGTCACAGTAAGAACTACAGGTTTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTGATGCCTCCCTTGCAGGGTCACAGTAAGAACTACAGGTTTGAC  550

seq1  TTTAAAGTGCCTGTGATTGGTCAACATAACACAAAGATGAAAAGCCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTGCCTGTGATTGGTCAACATAACACAAAGATGAAAAGCCTGGC  600

seq1  CCCTGGATTCAGATTCCAGGCTCTTCTTACTGTGTGATGTCCAGTGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGATTCAGATTCCAGGCTCTTCTTACTGTGTGATGTCCAGTGAGTT  650

seq1  ACTCAACTTGTTATTTGTAAGTGTCAGCTCTCTTCCTGATCCTTTCTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACTTGTTATTTGTAAGTGTCAGCTCTCTTCCTGATCCTTTCTGCC  700

seq1  CGAAATCACAGGGCATTGTGTTTATCATAAAATATATATTTATGTATAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATCACAGGGCATTGTGTTTATCATAAAATATATATTTATGTATAAC  750

seq1  TA-TTTTTCATTGAAATTTTGCCCTCTGTGAAGTTTTTTTTCTGTCTTCT  799
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTCATTGAAATTTTGCCCTCTGTGAAGTTTTTTTTCTGTCTTCT  800

seq1  TGCACATGGAGGTACCATA-TTTTTTTCA-TTCTTTGTGAATCTTGACTA  847
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  TGCACATGGAGGTACCATATTTTTTTTCATTTCTTTGTGAATCTTGACTA  850

seq1  -TTTTTCCAA-TTTTCTTTA-TTAAAATCTGTCTTGCATGCTGGGTCT-G  893
       ||||||||| ||||||||| ||||||||||||||||||||||||||| |
seq2  TTTTTTCCAATTTTTCTTTATTTAAAATCTGTCTTGCATGCTGGGTCTGG  900

seq1  GTGATTCACACC--AATAATTAGGAGACTAAGGCAAGAAGATCATAAG-T  940
      ||||||||||||  | |||||||||||||||||||||||||||||||| |
seq2  GTGATTCACACCCAATTAATTAGGAGACTAAGGCAAGAAGATCATAAGTT  950

seq1  TTAAGGCTAGCAT-GGGCTACCAAGTAAGA-CCTGG-CCTTGAGAAAGAA  987
      ||||||||||||| |||||||||||||||| ||||| |||||||||||||
seq2  TTAAGGCTAGCATGGGGCTACCAAGTAAGACCCTGGCCCTTGAGAAAGAA  1000

seq1  ATGTATCCTAAACAATTACATATTTGTGGAATAAAAAGTCTA-CATGTGC  1036
      |||||||||||   |||||||||||||||||||||| ||||| |||||||
seq2  ATGTATCCTAA--CATTACATATTTGTGGAATAAAAGGTCTACCATGTGC  1048

seq1  ATCATTT-CACTG-CTCCTCCC--AACACACTTGTAGGCAGAAA-CATTT  1081
      ||||||| ||||| ||||||||  | |||||||||||||||||| |||||
seq2  ATCATTTCCACTGCCTCCTCCCCAACCACACTTGTAGGCAGAAACCATTT  1098

seq1  ACATACAAGGAAATGGAGTCT-AGGAGAAATG-CAGTTAAGATATGAAGC  1129
      |||||||  |  || |||||| |||||||||| ||||| |||| |||  |
seq2  ACATACA--GGTATTGAGTCTAAGGAGAAATGCCAGTT-AGAT-TGAGCC  1144

seq1  CTCACACAGCGGA-TCAGCA-GGAGAG--CTAGACCAGG-CAGGAG  1170
       |||  || | || ||  || ||||||  |||||||||| ||||||
seq2  TTCAACCATCCGATTCGACAGGGAGAGCTCTAGACCAGGCCAGGAG  1190