BAC Information

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BAC

Clone NameB6Ng01-239J13
Chromosome7 (Build37)
Map Location 131,534,956 - 131,660,893
singlet/doubletdoublet
Overlap geneEG628779
Upstream geneLcmt1, Aqp8, Zkscan2, LOC100043482
Downstream geneEG545999, LOC670828, 4933440M02Rik, LOC100043014, Jmjd5, Nsmce1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239J13.bB6Ng01-239J13.g
ACCGA049979GA049980
length1,107867
definitionB6Ng01-239J13.b B6Ng01-239J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,534,956 - 131,536,063)(131,660,027 - 131,660,893)
sequence
gaattccctgaattttcccatcccaagctctgtatccaaactaaaatata
caatgaaagaaaataggagttagtaaaaacctttgagaacattaactttt
tgatacaacaaacatttaaattttttcctgcttgagaattcaatgcatag
acaaagaactggtctgagtatctgctggtgactagcagaagacagacata
tagacattgagcttttacttgccaacagatggaatacgcacatagaagat
gcatgctcaactccaacccaggtctttctctgtggttcagactaccatgg
tttcagactgtggatttcagattcccaagttgttgggtccacctgagtac
gtaacagatatcccatgtaccatattcaaagtcagtattgtcttccattt
cacagctgcttgctttacagggttctccttataaccagatcatccattca
ccatgctgctgccagtgttcctgaacacctctcttttacctcaatcttcc
catccataaggatgatggatgcttattcatatggactactgccacttcta
tccatagccttgacatagcttctgagcattgctgcctttgaaacacatac
agtcttttctggtctcaccagtcaaccagaaaagacaattaagtgtgaat
cacactctagtctcccgtttggctctcttcagtggattcttgtcatatac
aaaagaatccttatgccttcctcagatctgttaagccctctaggatttgg
tccccacccatctttcctgaccttattttctaactctcttacattttcta
actccctccagcatccctggcctttctcgtgttcctcacacacaccacga
tgtgagaacatgggcgtattgaaatgtcagacccagctgagaagaactta
atttaaaaagtagaaaagagaagagaaattgaggggtgaaaagcttcaag
aagtgggaaggataagactctaagcccaggtgggaaattgtcatatctga
tagaagaaaatacctcagctagctcagtctcagtctctctcccctcccca
ctctctctgtgcacgtgtatgttcctctctctctctctctctctctctca
cttctct

gaattccagcctggagaggatagattaggtgatatgtatgtcatagtgct
ttggggacatcctgtaattacttaataattttgtttgcagtgtgggtggc
atagtagcaaaccagcattctcctgggcagtcctgaggctatatcagtcc
atgattcattcataaaaataagaacattgttgaatatttattagaactaa
gtcaatgtcctgagtttatttgcaggaattatttcatactatttctacaa
tagtcctgtagactactaaataattttccatgtgctctactgtagaggaa
ggtaaaactcagaggggagaattattattttgtaattaaagaaactacaa
agtttcaggagctgaactcaactaaggtgtgtctggactcaaagccttta
ctcctaaccattatgttaaatgttctgcaatttatatcattgttttgaaa
cataagattttaattcaaaggattctgtgtatcacttctgttacaggaca
atgcagaaatccacagtcctgctttagactgttcgtttactttgtgcatt
agctgtatatttcatgagcaaataatgatgaattttgtttaaaacctcct
tttagtttagatgttaacattaaaatataaatagaaaaacacactgagac
aattctcttggggtttattattatattttaattatattgtcagtgttgac
aaatttccctttattgacattaaaattatttatatttaaagtaatgtttt
agcaattatttgggaattttatagaatatatttattccccttgccttgtt
cctcctagatatatcatacccttcttccccttctcctttcctctttcccc
tcttcccctctccccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_131534956_131536063
seq2: B6Ng01-239J13.b_43_1149

seq1  GAATTCCCTGAATTTTCCCATCCCAAGCTCTGTATCCAAACTAAAATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGAATTTTCCCATCCCAAGCTCTGTATCCAAACTAAAATATA  50

seq1  CAATGAAAGAAAATAGGAGTTAGTAAAAACCTTTGAGAACATTAACTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAAGAAAATAGGAGTTAGTAAAAACCTTTGAGAACATTAACTTTT  100

seq1  TGATACAACAAACATTTAAATTTTTTCCTGCTTGAGAATTCAATGCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAACAAACATTTAAATTTTTTCCTGCTTGAGAATTCAATGCATAG  150

seq1  ACAAAGAACTGGTCTGAGTATCTGCTGGTGACTAGCAGAAGACAGACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAACTGGTCTGAGTATCTGCTGGTGACTAGCAGAAGACAGACATA  200

seq1  TAGACATTGAGCTTTTACTTGCCAACAGATGGAATACGCACATAGAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATTGAGCTTTTACTTGCCAACAGATGGAATACGCACATAGAAGAT  250

seq1  GCATGCTCAACTCCAACCCAGGTCTTTCTCTGTGGTTCAGACTACCATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTCAACTCCAACCCAGGTCTTTCTCTGTGGTTCAGACTACCATGG  300

seq1  TTTCAGACTGTGGATTTCAGATTCCCAAGTTGTTGGGTCCACCTGAGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGACTGTGGATTTCAGATTCCCAAGTTGTTGGGTCCACCTGAGTAC  350

seq1  GTAACAGATATCCCATGTACCATATTCAAAGTCAGTATTGTCTTCCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGATATCCCATGTACCATATTCAAAGTCAGTATTGTCTTCCATTT  400

seq1  CACAGCTGCTTGCTTTACAGGGTTCTCCTTATAACCAGATCATCCATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGCTTGCTTTACAGGGTTCTCCTTATAACCAGATCATCCATTCA  450

seq1  CCATGCTGCTGCCAGTGTTCCTGAACACCTCTCTTTTACCTCAATCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTGCTGCCAGTGTTCCTGAACACCTCTCTTTTACCTCAATCTTCC  500

seq1  CATCCATAAGGATGATGGATGCTTATTCATATGGACTACTGCCACTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATAAGGATGATGGATGCTTATTCATATGGACTACTGCCACTTCTA  550

seq1  TCCATAGCCTTGACATAGCTTCTGAGCATTGCTGCCTTTGAAACACATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGCCTTGACATAGCTTCTGAGCATTGCTGCCTTTGAAACACATAC  600

seq1  AGTCTTTTCTGGTCTCACCAGTCAACCAGAAAAGACAATTAAGTGTGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTTCTGGTCTCACCAGTCAACCAGAAAAGACAATTAAGTGTGAAT  650

seq1  CACACTCTAGTCTCCCGTTTGGCTCTCTTCAGTGGATTCTTGTCATATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCTAGTCTCCCGTTTGGCTCTCTTCAGTGGATTCTTGTCATATAC  700

seq1  AAAAGAATCCTTATGCCTTCCTCAGATCTGTTAAGCCCTCTAGGATTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATCCTTATGCCTTCCTCAGATCTGTTAAGCCCTCTAGGATTTGG  750

seq1  TCCCCACCCATCTTTCCTGACCTTATTTTCTAACTCTCTTACATTTTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACCCATCTTTCCTGACCTTATTTTCTAACTCTCTTACATTTTCTA  800

seq1  ACTCCCTCCAGCATCCCTGGCCTTTCTCGTGTTCCTCACACACACCACGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTCCAGCATCCCTGGCCTTTCTCGTGTTCCTCACACACACCACGA  850

seq1  TGTGAGAACATGGGCGTATTGAAATGTCAGACCCAGCTGAGAAGAACTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAACATGGGCGTATTGAAATGTCAGACCCAGCTGAGAAGAACTTA  900

seq1  A-TTAAAAAGTAGAAAAGAGAAGAGAAATTGAGGGGTGAAAAGCTTCAAG  949
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAAGTAGAAAAGAGAAGAGAAATTGAGGGGTGAAAAGCTTCAAG  950

seq1  AAGGTGGGAAGGATAAGACTCTAAGCCCAGGTGGAAATTTGTCATATCTG  999
      || ||||||||||||||||||||||||||||||| || ||||||||||||
seq2  AA-GTGGGAAGGATAAGACTCTAAGCCCAGGTGGGAAATTGTCATATCTG  999

seq1  ATAGAAG-AAATACCTCAGCTAGCTTCAGTCTCAGTCTCTCTCCCCCTCC  1048
      ||||||| |||||||||||||||| ||||||||||||||||| |||||||
seq2  ATAGAAGAAAATACCTCAGCTAGC-TCAGTCTCAGTCTCTCT-CCCCTCC  1047

seq1  CCCACCTCTCTCTGTGCACGTGTATGTT-CTCTCTCTCTCTCTCTCTCTC  1097
      ||   ||||||||||||||||||||||| |||||||||||||||||||||
seq2  CC--ACTCTCTCTGTGCACGTGTATGTTCCTCTCTCTCTCTCTCTCTCTC  1095

seq1  TCTCTC-TCTCT  1108
      |||| | |||||
seq2  TCTCACTTCTCT  1107


seq1: chr7_131660027_131660893
seq2: B6Ng01-239J13.g_65_931 (reverse)

seq1  ATGGGGAGAGGGGAAGAGGGGAAAGAGGAAAGGAGAAGGGGAAGAAGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGAGAGGGGAAGAGGGGAAAGAGGAAAGGAGAAGGGGAAGAAGGGT  50

seq1  ATGATATATCTAGGAGGAACAAGGCAAGGGGAATAAATATATTCTATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATATCTAGGAGGAACAAGGCAAGGGGAATAAATATATTCTATAAA  100

seq1  ATTCCCAAATAATTGCTAAAACATTACTTTAAATATAAATAATTTTAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAAATAATTGCTAAAACATTACTTTAAATATAAATAATTTTAATG  150

seq1  TCAATAAAGGGAAATTTGTCAACACTGACAATATAATTAAAATATAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAAGGGAAATTTGTCAACACTGACAATATAATTAAAATATAATAA  200

seq1  TAAACCCCAAGAGAATTGTCTCAGTGTGTTTTTCTATTTATATTTTAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCCAAGAGAATTGTCTCAGTGTGTTTTTCTATTTATATTTTAATG  250

seq1  TTAACATCTAAACTAAAAGGAGGTTTTAAACAAAATTCATCATTATTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATCTAAACTAAAAGGAGGTTTTAAACAAAATTCATCATTATTTGC  300

seq1  TCATGAAATATACAGCTAATGCACAAAGTAAACGAACAGTCTAAAGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAAATATACAGCTAATGCACAAAGTAAACGAACAGTCTAAAGCAGG  350

seq1  ACTGTGGATTTCTGCATTGTCCTGTAACAGAAGTGATACACAGAATCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGATTTCTGCATTGTCCTGTAACAGAAGTGATACACAGAATCCTT  400

seq1  TGAATTAAAATCTTATGTTTCAAAACAATGATATAAATTGCAGAACATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAAAATCTTATGTTTCAAAACAATGATATAAATTGCAGAACATTT  450

seq1  AACATAATGGTTAGGAGTAAAGGCTTTGAGTCCAGACACACCTTAGTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAATGGTTAGGAGTAAAGGCTTTGAGTCCAGACACACCTTAGTTGA  500

seq1  GTTCAGCTCCTGAAACTTTGTAGTTTCTTTAATTACAAAATAATAATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCTCCTGAAACTTTGTAGTTTCTTTAATTACAAAATAATAATTCT  550

seq1  CCCCTCTGAGTTTTACCTTCCTCTACAGTAGAGCACATGGAAAATTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTGAGTTTTACCTTCCTCTACAGTAGAGCACATGGAAAATTATTT  600

seq1  AGTAGTCTACAGGACTATTGTAGAAATAGTATGAAATAATTCCTGCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCTACAGGACTATTGTAGAAATAGTATGAAATAATTCCTGCAAAT  650

seq1  AAACTCAGGACATTGACTTAGTTCTAATAAATATTCAACAATGTTCTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGGACATTGACTTAGTTCTAATAAATATTCAACAATGTTCTTAT  700

seq1  TTTTATGAATGAATCATGGACTGATATAGCCTCAGGACTGCCCAGGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGAATGAATCATGGACTGATATAGCCTCAGGACTGCCCAGGAGAA  750

seq1  TGCTGGTTTGCTACTATGCCACCCACACTGCAAACAAAATTATTAAGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTTTGCTACTATGCCACCCACACTGCAAACAAAATTATTAAGTAA  800

seq1  TTACAGGATGTCCCCAAAGCACTATGACATACATATCACCTAATCTATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGATGTCCCCAAAGCACTATGACATACATATCACCTAATCTATCC  850

seq1  TCTCCAGGCTGGAATTC  867
      |||||||||||||||||
seq2  TCTCCAGGCTGGAATTC  867


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