BAC Information

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BAC

Clone NameB6Ng01-239J21
Chromosome7 (Build37)
Map Location 77,170,333 - 77,337,627
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC384741, EG665410
Downstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239J21.bB6Ng01-239J21.g
ACCGA049993GA049994
length670966
definitionB6Ng01-239J21.b B6Ng01-239J21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,170,333 - 77,171,002)(77,336,679 - 77,337,627)
sequence
gaattctcattaccataaatctcaacctgtgactaagacagcctcaatcc
atgtttgagatccgtggatgagtgtttcacagtcctgcttttggactgat
ggctttatgatggtttgtaattgactaagtttgtaagaatttgacatgac
tgggactttcagccaatgcattagcttaggatcattatgcaaacaatcat
gcttagctatgtggaagagcaggtttctggagcctggcacacactagtat
tttttaaaactgttttatcactcaccaggaaaaaggccaagggccctgtc
aagaaggaaggtactacagagtttaaataactattccaggcaaatcacct
tgaaaacaccatggccttagggtcacacctgaaatatgacacacccttgc
acactgctgtgtcaatttcacattttaaaaatctctttcaagatattcag
ctaagaactgagtttgattcaatagcttctaccactgtagcctatgcatg
tacacttacctacatttcacttctgagccagtttatccctgaaatgactg
tggttgccacttcagcctgatgccatcctaccttgattgctttgagtgat
ggaaatgggatttagtcctactaaggtcgatgtatacacttggggaaggg
gaaagagagggggaggggga

gaattcatcagagaggggagttattagaacagaatgaagagggtgacctg
atgctcaggtcctgaatacagaacttcttgagtctcctttgaagaagcag
gattgagtctagaatcgggtgccgaatagcctctgccatgggaatcaaga
gggctttactttatggggaagtgtttgaaagggaaataggcagtggcttc
ttttcgtaaagaatccatgcagagatgaagaaatcctaagaaggaataag
gcctggtaccaaggaacagtgattaaaaaactggcactagagtaaaacag
acatgttgaccaatggaacagcatagaggaccagtgataaatacactgtt
atgtcatctctctctctctctctctctctctctctctctctccctctctc
tctgtttctttctctcaagtcttactttgtagccttagctaacctagaat
tgttatgtatatcacactggcctggctcccatagaggtccatctgccttt
gcctcatccaggatatttggctggtctctgcttttctaggcagctcgact
gatctgagccttttctaggcagcacttgtctaagatcaagtctcagcagt
cttttttgtttatatagtcttgaggaggtcaagtttaatctggtcagttt
tagggacatcttgaagatattttgaatgagttgcttcccttcttgtctca
atgagctttccctgcagaatggtctggttttatctttcttacattatgct
gctttaccctccctatagtcagcctgcccttgaaaataccttattgtttc
acatctcatttttacatttctacatattaagaagcttctatcctagatga
aaaggggtttcctctcagagccaaactactatataatatcagctaagtcc
tcagaccagggattgaataaccaccatatataaaagttctggcaaaaaac
taaaataccccaatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_77170333_77171002
seq2: B6Ng01-239J21.b_42_711

seq1  GAATTCTCATTACCATAAATCTCAACCTGTGACTAAGACAGCCTCAATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTACCATAAATCTCAACCTGTGACTAAGACAGCCTCAATCC  50

seq1  ATGTTTGAGATCCGTGGATGAGTGTTTCACAGTCCTGCTTTTGGACTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGAGATCCGTGGATGAGTGTTTCACAGTCCTGCTTTTGGACTGAT  100

seq1  GGCTTTATGATGGTTTGTAATTGACTAAGTTTGTAAGAATTTGACATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTATGATGGTTTGTAATTGACTAAGTTTGTAAGAATTTGACATGAC  150

seq1  TGGGACTTTCAGCCAATGCATTAGCTTAGGATCATTATGCAAACAATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTTTCAGCCAATGCATTAGCTTAGGATCATTATGCAAACAATCAT  200

seq1  GCTTAGCTATGTGGAAGAGCAGGTTTCTGGAGCCTGGCACACACTAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGCTATGTGGAAGAGCAGGTTTCTGGAGCCTGGCACACACTAGTAT  250

seq1  TTTTTAAAACTGTTTTATCACTCACCAGGAAAAAGGCCAAGGGCCCTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAACTGTTTTATCACTCACCAGGAAAAAGGCCAAGGGCCCTGTC  300

seq1  AAGAAGGAAGGTACTACAGAGTTTAAATAACTATTCCAGGCAAATCACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGAAGGTACTACAGAGTTTAAATAACTATTCCAGGCAAATCACCT  350

seq1  TGAAAACACCATGGCCTTAGGGTCACACCTGAAATATGACACACCCTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACACCATGGCCTTAGGGTCACACCTGAAATATGACACACCCTTGC  400

seq1  ACACTGCTGTGTCAATTTCACATTTTAAAAATCTCTTTCAAGATATTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCTGTGTCAATTTCACATTTTAAAAATCTCTTTCAAGATATTCAG  450

seq1  CTAAGAACTGAGTTTGATTCAATAGCTTCTACCACTGTAGCCTATGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAACTGAGTTTGATTCAATAGCTTCTACCACTGTAGCCTATGCATG  500

seq1  TACACTTACCTACATTTCACTTCTGAGCCAGTTTATCCCTGAAATGACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTACCTACATTTCACTTCTGAGCCAGTTTATCCCTGAAATGACTG  550

seq1  TGGTTGCCACTTCAGCCTGATGCCATCCTACCTTGATTGCTTTGAGTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCCACTTCAGCCTGATGCCATCCTACCTTGATTGCTTTGAGTGAT  600

seq1  GGAAATGGGATTTAGTCCTACTAAGGTCGATGTATACACTTGGGGAAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGGGATTTAGTCCTACTAAGGTCGATGTATACACTTGGGGAAGGG  650

seq1  GAAAGAGAGGGGGAGGGGGA  670
      ||||||||||||||||||||
seq2  GAAAGAGAGGGGGAGGGGGA  670


seq1: chr7_77336679_77337627
seq2: B6Ng01-239J21.g_70_1035 (reverse)

seq1  ACATT-GGGTA-TTTAGTTTTT--GCAGAAC-TTTATATATTGTGGTTA-  44
      ||||| ||||| ||||||||||   |||||| ||||||||| ||||||| 
seq2  ACATTGGGGTATTTTAGTTTTTTGCCAGAACTTTTATATATGGTGGTTAT  50

seq1  TCAATCCCTGGTCTGAGGACTTAGCTGATATTATATAGTAG-TTGGCTCT  93
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCAATCCCTGGTCTGAGGACTTAGCTGATATTATATAGTAGTTTGGCTCT  100

seq1  GAGAGGAAACCC--TTTCATCTAGGATAGAAGCTTCTTAATATGTAG-AA  140
      ||||||||||||  ||||||||||||||||||||||||||||||||| ||
seq2  GAGAGGAAACCCCTTTTCATCTAGGATAGAAGCTTCTTAATATGTAGAAA  150

seq1  TGTAAAAATGAGATGTGAAACAATAAGGTATTTTCAA-GGCAGGCTGACT  189
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTAAAAATGAGATGTGAAACAATAAGGTATTTTCAAGGGCAGGCTGACT  200

seq1  ATAGGGA-GGTAAAGCAGCATAATGTAAG-AAGAT-AAACCAGACCATTC  236
      ||||||| ||||||||||||||||||||| ||||| ||||||||||||||
seq2  ATAGGGAGGGTAAAGCAGCATAATGTAAGAAAGATAAAACCAGACCATTC  250

seq1  TGCAGGG-AAGCTCATTGAGACAAGAA-GGAAGCAACTCATTCAAAATAT  284
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  TGCAGGGAAAGCTCATTGAGACAAGAAGGGAAGCAACTCATTCAAAATAT  300

seq1  CTTCAAGATGTCCCTAAAACTGACCAGATT-AACTTGACCTCCTCAAGAC  333
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTTCAAGATGTCCCTAAAACTGACCAGATTAAACTTGACCTCCTCAAGAC  350

seq1  TATATAAACAAAAAAGACTGCTGAGACTTGATCTTAGACAAGTGCTGCCT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAACAAAAAAGACTGCTGAGACTTGATCTTAGACAAGTGCTGCCT  400

seq1  AGAAAAGGCTCAGATCAGTCGAGCTGCCTAGAAAAGCAGAGACCAGCCAA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGCTCAGATCAGTCGAGCTGCCTAGAAAAGCAGAGACCAGCCAA  450

seq1  ATATCCTGGATGAGGCAAAGGCAGATGGACCTCTATGGGAGCCAGGCCAG  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTGGATGAGGCAAAGGCAGATGGACCTCTATGGGAGCCAGGCCAG  500

seq1  TGTGATATACATAACAATTCTAGGTTAGCTAAGGCTACAAAGTAAGACTT  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATATACATAACAATTCTAGGTTAGCTAAGGCTACAAAGTAAGACTT  550

seq1  GAGAGAAAGAAACAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAGAAACAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGA  600

seq1  GAGAGAGAGATGACATAACAGTGTATTTATCACTGGTCCTCTATGCTGTT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGATGACATAACAGTGTATTTATCACTGGTCCTCTATGCTGTT  650

seq1  CCATTGGTCAACATGTCTGTTTTACTCTAGTGCCAGTTTTTTAATCACTG  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGTCAACATGTCTGTTTTACTCTAGTGCCAGTTTTTTAATCACTG  700

seq1  TTCCTTGGTACCAGGCCTTATTCCTTCTTAGGATTTCTTCATCTCTGCAT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGGTACCAGGCCTTATTCCTTCTTAGGATTTCTTCATCTCTGCAT  750

seq1  GGATTCTTTACGAAAAGAAGCCACTGCCTATTTCCCTTTCAAACACTTCC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTTTACGAAAAGAAGCCACTGCCTATTTCCCTTTCAAACACTTCC  800

seq1  CCATAAAGTAAAGCCCTCTTGATTCCCATGGCAGAGGCTATTCGGCACCC  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAGTAAAGCCCTCTTGATTCCCATGGCAGAGGCTATTCGGCACCC  850

seq1  GATTCTAGACTCAATCCTGCTTCTTCAAAGGAGACTCAAGAAGTTCTGTA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTAGACTCAATCCTGCTTCTTCAAAGGAGACTCAAGAAGTTCTGTA  900

seq1  TTCAGGACCTGAGCATCAGGTCACCCTCTTCATTCTGTTCTAATAACTCC  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGACCTGAGCATCAGGTCACCCTCTTCATTCTGTTCTAATAACTCC  950

seq1  CCTCTCTGATGAATTC  949
      ||||||||||||||||
seq2  CCTCTCTGATGAATTC  966


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