BAC Information

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BAC

Clone NameB6Ng01-239N03
Chromosome7 (Build37)
Map Location 24,433,202 - 24,622,235
singlet/doubletdoublet
Overlap geneV1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943
Upstream geneEG667530, LOC667536, EG667543, LOC100043645, EG667551, LOC100043650, LOC100043067, LOC100043069, LOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7
Downstream geneV1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239N03.bB6Ng01-239N03.g
ACCGA050145GA050146
length1,0701,026
definitionB6Ng01-239N03.b B6Ng01-239N03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,433,202 - 24,434,265)(24,621,217 - 24,622,235)
sequence
gaattctttgtttagctctgtaccccattttaatggggttatttgatttt
ctggagttcaccttcttgagttctttatatatattggatattagtcccct
atctgatttaggattggtaacgatcctttcccaatctattggtggccttt
ttgtcttattgacagtgtcttttgccttacagaagttttgcaattttatg
aggtcccatttgttgactctcgatcatacagcacaagccatttacttcta
gtttttggaatctttttgaaactgtgcctctgtgggccacaattcataac
tcataacttagtggatcctgttcaattggttcaaattccattatgaagtc
tggaaaagccatctttttgttttgttttgttttgtgttgttttgttttgt
tttgttttttaaaagatacaggctacggttttacagtcgtgccccaaggt
ggtgctgtaggattttgattgaattcatgtaaaatttcatttctaaaaga
gttattattattactttactcgttgttttgtttgttatctcttcatagtt
ttactatcattatttcacaatttattttcctattttcattacatcctatt
cacagcctacctcctctgcttccagtcttgatcttactaattcctgccct
cattacccaccttcccttctcctgggagaaggggaagctcctgttgggta
ccacactgccttttgaaaatctagtaccaaaaggattaagcaccacctct
cccactgaggtctaattaggcagaaaaagtaggggaagggggtcctttct
taagcttaagctttgttgccactagctcattaattcagttatctcatttt
atgctaattgaagttctgccacttagcaagttaccctataatcagtttta
tacatcagatttcctttcctgtcttgtgtggcaatcctccctacacctga
cttctttccaagacatctctctctgatcagaagtccccacctttacaaat
ctccttatttgcttatggcttataggcattacctttttaccatttatttc
caaccctgcccttaaatgaa
gaattcagaactgtgtttctgaagtaacactcagaagcaggccttcattc
ctgtgagcatcaccatcattgatgaatgtaggtgagatttctgcaattgt
agatttttgcttagacttcatttctttcttctgctattaatggtgttttg
tagaaccaacattaataattagattgacttcatttttgtctccacagttt
acctaatcttgtcagtcatgtccttagactaaagaaatgtatattccatg
gctcaggattcatctgaaaaattccttccatgtgacgagtacatgtgaga
ggacaggtttttaactgtaagatgaatgcttatttttcctatggacagca
aaataaaccaagtaagtttcagactaaacatgttctttctaaaactgagt
ttcaaaaagtctttgtgtgcaaagaattaaactgtaattgttttaatggt
ttcagttgtggatgacaaaaactgcagatgaatcaattatgtgtacagca
cctaattccttagaaaaatagatgaagttagaaatttataaattaataat
atgcttgggctccacagacttttgtcccacatatatgatatatgtgtaaa
tcaaggttcttctatatggacagaataagagtgacatttccagaaatatt
ttgcatactatcgatatgttgaagaatgtaaaaatttatcaaaactagat
ggattattttagggaaagtacttcagttacattttttatgacgtatactt
attaaatttgtattttgttctttaaatttttatttatttaatttttactc
atttgtgttttgcctgcaggtatggtagtaagtaccacatgccattaatt
ggttttactaacagttgagagctgtgatgtggggtgggtgggaaagtgaa
ctaaagtcctcttgggatcagcaacccagtgcctttaattgctgagcccg
tctctccagccctgtatatatgtttaaaatgtacttattttatttgtgtg
tatgaatgcctttgcctgggcatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_24433202_24434265
seq2: B6Ng01-239N03.b_46_1115

seq1  GAATTCTTTGTTTAGCTCTGTACCCCATTTTAATGGGGTTATTTGATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCCATTTTAATGGGGTTATTTGATTTT  50

seq1  CTGGAGTTCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTTCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCT  100

seq1  ATCTGATTTAGGATTGGTAACGATCCTTTCCCAATCTATTGGTGGCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATTTAGGATTGGTAACGATCCTTTCCCAATCTATTGGTGGCCTTT  150

seq1  TTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGTTTTGCAATTTTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGTTTTGCAATTTTATG  200

seq1  AGGTCCCATTTGTTGACTCTCGATCATACAGCACAAGCCATTTACTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCATTTGTTGACTCTCGATCATACAGCACAAGCCATTTACTTCTA  250

seq1  GTTTTTGGAATCTTTTTGAAACTGTGCCTCTGTGGGCCACAATTCATAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGGAATCTTTTTGAAACTGTGCCTCTGTGGGCCACAATTCATAAC  300

seq1  TCATAACTTAGTGGATCCTGTTCAATTGGTTCAAATTCCATTATGAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACTTAGTGGATCCTGTTCAATTGGTTCAAATTCCATTATGAAGTC  350

seq1  TGGAAAAGCCATCTTTTTGTTTTGTTTTGTTTTGTGTTGTTTTGTTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAGCCATCTTTTTGTTTTGTTTTGTTTTGTGTTGTTTTGTTTTGT  400

seq1  TTTGTTTTTTAAAAGATACAGGCTACGGTTTTACAGTCGTGCCCCAAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTAAAAGATACAGGCTACGGTTTTACAGTCGTGCCCCAAGGT  450

seq1  GGTGCTGTAGGATTTTGATTGAATTCATGTAAAATTTCATTTCTAAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGTAGGATTTTGATTGAATTCATGTAAAATTTCATTTCTAAAAGA  500

seq1  GTTATTATTATTACTTTACTCGTTGTTTTGTTTGTTATCTCTTCATAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTATTATTACTTTACTCGTTGTTTTGTTTGTTATCTCTTCATAGTT  550

seq1  TTACTATCATTATTTCACAATTTATTTTCCTATTTTCATTACATCCTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATCATTATTTCACAATTTATTTTCCTATTTTCATTACATCCTATT  600

seq1  CACAGCCTACCTCCTCTGCTTCCAGTCTTGATCTTACTAATTCCTGCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCTACCTCCTCTGCTTCCAGTCTTGATCTTACTAATTCCTGCCCT  650

seq1  CATTACCCACCTTCCCTTCTCCTGGGAGAAGGGGAAGCTCCTGTTGGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCCACCTTCCCTTCTCCTGGGAGAAGGGGAAGCTCCTGTTGGGTA  700

seq1  CCACACTGCC-TTTGAAAATCTAGTACCAAAAGGATTAAGCACCACCTCT  749
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCACACTGCCTTTTGAAAATCTAGTACCAAAAGGATTAAGCACCACCTCT  750

seq1  CCCACTGAGGTCTAATTAGGCAGAAAAAGTAGGGGAAGGGGGTCCTTTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGAGGTCTAATTAGGCAGAAAAAGTAGGGGAAGGGGGTCCTTTCT  800

seq1  TAAGC-TAAGC-TTGTTGCCACTAGCTCA-TAATTCAGTTATCTCA-TTT  845
      ||||| ||||| ||||||||||||||||| |||||||||||||||| |||
seq2  TAAGCTTAAGCTTTGTTGCCACTAGCTCATTAATTCAGTTATCTCATTTT  850

seq1  ATGCTAATTGAAGTTCTGCCACTTAGCAGGTTA-CCTATAATCAGTTTTA  894
      |||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  ATGCTAATTGAAGTTCTGCCACTTAGCAAGTTACCCTATAATCAGTTTTA  900

seq1  TACATCAGATTTCC-TTCCTGTC-TGTGTGGCAAATCTCCCTACACCTGA  942
      |||||||||||||| |||||||| ||||||||||  ||||||||||||||
seq2  TACATCAGATTTCCTTTCCTGTCTTGTGTGGCAATCCTCCCTACACCTGA  950

seq1  C-TCTTTCCAAGACATCCTCTCTCTGACCAGAAGT-CCCACC-TTACAAA  989
      | |||||||||||||| |||||||||| ||||||| |||||| |||||||
seq2  CTTCTTTCCAAGACAT-CTCTCTCTGATCAGAAGTCCCCACCTTTACAAA  999

seq1  TCTCC-TATTTGC-TATGGGCTATAGGCATTACCTTTTAACCAATTTATT  1037
      ||||| ||||||| |||||  ||||||||||||||||| ||| |||||||
seq2  TCTCCTTATTTGCTTATGGCTTATAGGCATTACCTTTTTACC-ATTTATT  1048

seq1  T-CAACCCTGCCTTAGACAGAAAATGAA  1064
      | |||||||||| |       |||||||
seq2  TCCAACCCTGCCCT------TAAATGAA  1070

seq1: chr7_24621217_24622235
seq2: B6Ng01-239N03.g_70_1095 (reverse)

seq1  TTCATGCC--AGCAAA-GCATTCATACACACAAAATAAAATAAGTACATT  47
      ||||||||   ||||| |||||||||||||| ||||||||||||||||||
seq2  TTCATGCCCAGGCAAAGGCATTCATACACAC-AAATAAAATAAGTACATT  49

seq1  TTAAAACATATAATACAGGGCTGGAGAGAC-GGCTCAGCAATTAAGGGCA  96
      || |||||||| |||||||||||||||||| |||||||||||||| ||||
seq2  TT-AAACATAT-ATACAGGGCTGGAGAGACGGGCTCAGCAATTAAAGGCA  97

seq1  CT-GGTTGCTGATCC--AGAGGACCTTAGTTCACTTT-CCACC--ACCCA  140
      || ||||||||||||  ||||||| |||||||||||| |||||   ||||
seq2  CTGGGTTGCTGATCCCAAGAGGACTTTAGTTCACTTTCCCACCCACCCCA  147

seq1  CATCACAGCTCTCAACTGTTAGTAAAACCAATTAATGGCATGTGGTACTT  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAGCTCTCAACTGTTAGTAAAACCAATTAATGGCATGTGGTACTT  197

seq1  ACTACCATACCTGCAGGCAAAACACAAATGAGTAAAAATTAAATAAATAA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCATACCTGCAGGCAAAACACAAATGAGTAAAAATTAAATAAATAA  247

seq1  AAATTTAAAGAACAAAATACAAATTTAATAAGTATACGTCATAAAAAATG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAAGAACAAAATACAAATTTAATAAGTATACGTCATAAAAAATG  297

seq1  TAACTGAAGTACTTTCCCTAAAATAATCCATCTAGTTTTGATAAATTTTT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAAGTACTTTCCCTAAAATAATCCATCTAGTTTTGATAAATTTTT  347

seq1  ACATTCTTCAACATATCGATAGTATGCAAAATATTTCTGGAAATGTCACT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTCAACATATCGATAGTATGCAAAATATTTCTGGAAATGTCACT  397

seq1  CTTATTCTGTCCATATAGAAGAACCTTGATTTACACATATATCATATATG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCTGTCCATATAGAAGAACCTTGATTTACACATATATCATATATG  447

seq1  TGGGACAAAAGTCTGTGGAGCCCAAGCATATTATTAATTTATAAATTTCT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAAAAGTCTGTGGAGCCCAAGCATATTATTAATTTATAAATTTCT  497

seq1  AACTTCATCTATTTTTCTAAGGAATTAGGTGCTGTACACATAATTGATTC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCATCTATTTTTCTAAGGAATTAGGTGCTGTACACATAATTGATTC  547

seq1  ATCTGCAGTTTTTGTCATCCACAACTGAAACCATTAAAACAATTACAGTT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAGTTTTTGTCATCCACAACTGAAACCATTAAAACAATTACAGTT  597

seq1  TAATTCTTTGCACACAAAGACTTTTTGAAACTCAGTTTTAGAAAGAACAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTTTGCACACAAAGACTTTTTGAAACTCAGTTTTAGAAAGAACAT  647

seq1  GTTTAGTCTGAAACTTACTTGGTTTATTTTGCTGTCCATAGGAAAAATAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTCTGAAACTTACTTGGTTTATTTTGCTGTCCATAGGAAAAATAA  697

seq1  GCATTCATCTTACAGTTAAAAACCTGTCCTCTCACATGTACTCGTCACAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCATCTTACAGTTAAAAACCTGTCCTCTCACATGTACTCGTCACAT  747

seq1  GGAAGGAATTTTTCAGATGAATCCTGAGCCATGGAATATACATTTCTTTA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAATTTTTCAGATGAATCCTGAGCCATGGAATATACATTTCTTTA  797

seq1  GTCTAAGGACATGACTGACAAGATTAGGTAAACTGTGGAGACAAAAATGA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGGACATGACTGACAAGATTAGGTAAACTGTGGAGACAAAAATGA  847

seq1  AGTCAATCTAATTATTAATGTTGGTTCTACAAAACACCATTAATAGCAGA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATCTAATTATTAATGTTGGTTCTACAAAACACCATTAATAGCAGA  897

seq1  AGAAAGAAATGAAGTCTAAGCAAAAATCTACAATTGCAGAAATCTCACCT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAATGAAGTCTAAGCAAAAATCTACAATTGCAGAAATCTCACCT  947

seq1  ACATTCATCAATGATGGTGATGCTCACAGGAATGAAGGCCTGCTTCTGAG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCATCAATGATGGTGATGCTCACAGGAATGAAGGCCTGCTTCTGAG  997

seq1  TGTTACTTCAGAAACACAGTTCTGAATTC  1019
      |||||||||||||||||||||||||||||
seq2  TGTTACTTCAGAAACACAGTTCTGAATTC  1026