BAC Information

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BAC

Clone NameB6Ng01-239P05
Chromosome7 (Build37)
Map Location 87,958,215 - 88,117,149
singlet/doubletdoublet
Overlap geneLOC100042402, Zscan2, Wdr73, Nmb, Sec11a
Upstream geneMesp2, Anpep, Ap3s2, 2610034B18Rik, Zfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3, Iqgap1
Downstream geneZfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239P05.bB6Ng01-239P05.g
ACCGA050243GA050244
length1,196645
definitionB6Ng01-239P05.b B6Ng01-239P05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,115,953 - 88,117,149)(87,958,215 - 87,958,861)
sequence
gaattcagtagaccagtgcccagtggggcgtctcaactcactgccatgct
gccaaacctgaggacgggagttcaatcctagagactcacagtataaagag
aaataaccttcatatgtgcaccataatgcaacaaagagagagaaagagag
acagagaggcataaatgtaatttaaatttttaaagaaattcttatgacat
gacaatcctttccattctcaaaattttgagcattctctgccagctaagcc
ttctgctgatttaaatgctttaattccctaaagagacaggcagaattctc
ttagatagcacaccagttctactcaacaagaagctaagaaatctgaatac
tgtgggatactcatggcgctgaatcaaggtccaaggaacaaggtgctacc
aactggtgcatggttttgatcatcagggagaaattgaaagtctattccac
agtgaaggagagacgtataactggaaaaagtgggtcctgagaactcttag
gtgcccacagaagtggaattaatccaattcagggacctatgacactaatc
taaccgttcagtagcaaaggtctgagtcaccatatgtggtggtttgaaca
tgcttggcccagggagtggcactatttggtggtgtggccttgttggaaca
ggtgtggacttgttggaggaagtgtgtcactttggacatgggctttaaag
ccctcatctcagctgcctggaatccagtcttctcctagcttccttcagaa
caagaggtggaactctcagttcctcctgcaccaagcctgcctgaacacta
ccatgctcccaccttgatgataatggactgaatctctgaacctgtaagcc
agcctcaattaatagtgttcttatgagatttgttttggtcatggtgtctg
ttcacagcagtaaaacccttaactaagataccctatcaggaaagaaactg
gggcaaattacgtttcttgcccttcagaacagccggaaggaagcagctat
gaccatgtaatcagttacagaaacaaaggttatattctattcatgtaact
gctttcactttcatgggagagttaaagcaaacaggtgtggctagctccct
agatgacaaggtcaggcttacaacagcttgtaactctgttatttgggtaa
attccacatagctctaaggtccttgatcgtgtggttctgagattaa
gaattcattctgtagcccaggctggcttcgtactcatacagatccaccct
gcctctcctagagtgttggattaaaggcctgtgatgttaggccctactaa
aatgttaaatcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatt
ttttttttagctgtacctctgtctctcccaaccagtttatgtggtcctcc
tcaagatagttgtcacatttatatctgcgtctctaggagcctggcctggg
cctacatgtgacagatgagtcatgggcttctattgagttaaggttgataa
agagccacagagtggagttgggcaagcacgaggtctgacaggccttggcc
tccgtcaaagcaaaatcttctgaggcctatgttcaaaatgaaggcctgac
atttacgtgtttctccttttcctcagttgagtccaattcacccagacaga
aataacagatttagggcaaaattcctgcacagaaaataaaagcaaacttc
tggcttctggagccctagacagcatcttaaagaatctcataaggagccgg
gcggtggtggcacacacctttaatcccagcactcgggaggcagaggtggg
tgggtgtctctgtgagtgtgaagtaggacggggctgggggggggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_88115953_88117149
seq2: B6Ng01-239P05.b_46_1241 (reverse)

seq1  TTAA-CTCAGAACCACACGACCAAGGGGACTTGGGAAGCTGTGTGG-ATT  48
      |||| ||||||||||||||| |||  |||| |  | |||| ||||| |||
seq2  TTAATCTCAGAACCACACGATCAA--GGACCTTAG-AGCTATGTGGAATT  47

seq1  TACCCAAATTAACAGAGTACAAAGCTGTTGT-AGCCTGACCTTTGTCATC  97
      |||||||| |||||||||   |||||||||| ||||||||| ||||||||
seq2  TACCCAAA-TAACAGAGTTACAAGCTGTTGTAAGCCTGACC-TTGTCATC  95

seq1  TTGGGAGCTAGCCACACCTGTTTTGCTTTTAACTCTCCCATGAAAGTGAA  147
      | |||||||||||||||||| ||||| |||||||||||||||||||||||
seq2  TAGGGAGCTAGCCACACCTG-TTTGC-TTTAACTCTCCCATGAAAGTGAA  143

seq1  AGCAGTTACATTGATAGAATATAACCTTTGTTTCTGTAACTGATTACATG  197
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTACATGAATAGAATATAACCTTTGTTTCTGTAACTGATTACATG  193

seq1  GTCATAGCTGCTTTCTTCC-GCTGTTCTGAAGGGCAAG-AACGTAATTTG  245
      ||||||||||||| ||||| |||||||||||||||||| |||||||||||
seq2  GTCATAGCTGCTTCCTTCCGGCTGTTCTGAAGGGCAAGAAACGTAATTTG  243

seq1  -CCCAGTTTCTTTCCTGATAGGGTATCTTAGTT-AGGGTTTTACTGCTGT  293
       |||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCCCAGTTTCTTTCCTGATAGGGTATCTTAGTTAAGGGTTTTACTGCTGT  293

seq1  GAACAGACACCATGACCAAAACAAATCTCATAAGAACACTATTTAATTGA  343
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAACAGACACCATGACCAAAACAAATCTCATAAGAACACTA-TTAATTGA  342

seq1  GGCTGGCTTACAGGTTCAGAGATTCAGTCCATTATCATCAAGGTGGGAGC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCTTACAGGTTCAGAGATTCAGTCCATTATCATCAAGGTGGGAGC  392

seq1  ATGGTAGTGTTCAGGCAGGCTTGGTGCAGGAGGAACTGAGAGTTCCACCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGTGTTCAGGCAGGCTTGGTGCAGGAGGAACTGAGAGTTCCACCT  442

seq1  CTTGTTCTGAAGGAAGCTAGGAGAAGACTGGATTCCAGGCAGCTGAGATG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCTGAAGGAAGCTAGGAGAAGACTGGATTCCAGGCAGCTGAGATG  492

seq1  AGGGCTTTAAAGCCCATGTCCAAAGTGACACACTTCCTCCAACAAGTCCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTTAAAGCCCATGTCCAAAGTGACACACTTCCTCCAACAAGTCCA  542

seq1  CACCTGTTCCAACAAGGCCACACCACCAAATAGTGCCACTCCCTGGGCCA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTTCCAACAAGGCCACACCACCAAATAGTGCCACTCCCTGGGCCA  592

seq1  AGCATGTTCAAACCACCACATATGGTGACTCAGACCTTTGCTACTGAACG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTTCAAACCACCACATATGGTGACTCAGACCTTTGCTACTGAACG  642

seq1  GTTAGATTAGTGTCATAGGTCCCTGAATTGGATTAATTCCACTTCTGTGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATTAGTGTCATAGGTCCCTGAATTGGATTAATTCCACTTCTGTGG  692

seq1  GCACCTAAGAGTTCTCAGGACCCACTTTTTCCAGTTATACGTCTCTCCTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTAAGAGTTCTCAGGACCCACTTTTTCCAGTTATACGTCTCTCCTT  742

seq1  CACTGTGGAATAGACTTTCAATTTCTCCCTGATGATCAAAACCATGCACC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGGAATAGACTTTCAATTTCTCCCTGATGATCAAAACCATGCACC  792

seq1  AGTTGGTAGCACCTTGTTCCTTGGACCTTGATTCAGCGCCATGAGTATCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTAGCACCTTGTTCCTTGGACCTTGATTCAGCGCCATGAGTATCC  842

seq1  CACAGTATTCAGATTTCTTAGCTTCTTGTTGAGTAGAACTGGTGTGCTAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTATTCAGATTTCTTAGCTTCTTGTTGAGTAGAACTGGTGTGCTAT  892

seq1  CTAAGAGAATTCTGCCTGTCTCTTTAGGGAATTAAAGCATTTAAATCAGC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGAATTCTGCCTGTCTCTTTAGGGAATTAAAGCATTTAAATCAGC  942

seq1  AGAAGGCTTAGCTGGCAGAGAATGCTCAAAATTTTGAGAATGGAAAGGAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTTAGCTGGCAGAGAATGCTCAAAATTTTGAGAATGGAAAGGAT  992

seq1  TGTCATGTCATAAGAATTTCTTTAAAAATTTAAATTACATTTATGCCTCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGTCATAAGAATTTCTTTAAAAATTTAAATTACATTTATGCCTCT  1042

seq1  CTGTCTCTCTTTCTCTCTCTTTGTTGCATTATGGTGCACATATGAAGGTT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTCTTTCTCTCTCTTTGTTGCATTATGGTGCACATATGAAGGTT  1092

seq1  ATTTCTCTTTATACTGTGAGTCTCTAGGATTGAACTCCCGTCCTCAGGTT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTTTATACTGTGAGTCTCTAGGATTGAACTCCCGTCCTCAGGTT  1142

seq1  TGGCAGCATGGCAGTGAGTTGAGACGCCCCACTGGGCACTGGTCTACTGA  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCATGGCAGTGAGTTGAGACGCCCCACTGGGCACTGGTCTACTGA  1192

seq1  ATTC  1197
      ||||
seq2  ATTC  1196

seq1: chr7_87958215_87958861
seq2: B6Ng01-239P05.g_67_711

seq1  GAATTCATTCTGTAGCCCAGGCTGGCTTCGTACTCATACAGATCCACCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTGTAGCCCAGGCTGGCTTCGTACTCATACAGATCCACCCT  50

seq1  GCCTCTCCTAGAGTGTTGGATTAAAGGCCTGTGATGTTAGGCCCTACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCCTAGAGTGTTGGATTAAAGGCCTGTGATGTTAGGCCCTACTAA  100

seq1  AATGTTAAATCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  150
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  AATGTTAAATCTT--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  148

seq1  TTTTTTTTTTAGCTGTACCTCTGTCTCTCCCAACCAGTTTATGTGGTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAGCTGTACCTCTGTCTCTCCCAACCAGTTTATGTGGTCCT  198

seq1  CCTCAAGATAGTTGTCACATTTATATCTGCGTCTCTAGGAGCCTGGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGATAGTTGTCACATTTATATCTGCGTCTCTAGGAGCCTGGCCTG  248

seq1  GGCCTACATGTGACAGATGAGTCATGGGCTTCTATTGAGTTAAGGTTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTACATGTGACAGATGAGTCATGGGCTTCTATTGAGTTAAGGTTGAT  298

seq1  AAAGAGCCACAGAGTGGAGTTGGGCAAGCACGAGGTCTGACAGGCCTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCCACAGAGTGGAGTTGGGCAAGCACGAGGTCTGACAGGCCTTGG  348

seq1  CCTCCGTCAGAGCAGAATCTTCTGAGGCCTATGTTCAAAATGAAGGCCTG  400
      ||||||||| |||| |||||||||||||||||||||||||||||||||||
seq2  CCTCCGTCAAAGCAAAATCTTCTGAGGCCTATGTTCAAAATGAAGGCCTG  398

seq1  ACATTTACGTGTTTCTCCTTTTCCTCAGTTGAGTCCAATTCACCCAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTACGTGTTTCTCCTTTTCCTCAGTTGAGTCCAATTCACCCAGACA  448

seq1  GAAATAACAGATTTAGGGCAAAATTCCTGCACAGAAAATAAAAGCAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAACAGATTTAGGGCAAAATTCCTGCACAGAAAATAAAAGCAAACT  498

seq1  TCTGGCTTCTGGAGCCCTAGACAGCATCTTAAAGAATCTCATAAGGAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTCTGGAGCCCTAGACAGCATCTTAAAGAATCTCATAAGGAGCC  548

seq1  GGGCGGTGGTGGCACACACCTTTAATCCCAGCACTCGGGAGGCAGAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGTGGTGGCACACACCTTTAATCCCAGCACTCGGGAGGCAGAGGTG  598

seq1  GGTGGGTGTCTCTGTGAGTGTGAAGTAGGACGGGGCTGGGGGGGGGC  647
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTGTCTCTGTGAGTGTGAAGTAGGACGGGGCTGGGGGGGGGC  645