BAC Information

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BAC

Clone NameB6Ng01-240G13
Chromosome7 (Build37)
Map Location 49,818,885 - 49,954,129
singlet/doubletdoublet
Overlap geneEG637776, C330019L16Rik, EG434179
Upstream gene2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449
Downstream geneEG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240G13.bB6Ng01-240G13.g
ACCGA050588GA050589
length1,088592
definitionB6Ng01-240G13.b B6Ng01-240G13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,953,037 - 49,954,129)(49,818,885 - 49,819,476)
sequence
gaattctgagtttttccacatgccttataagtttgcaatcaacgttcctg
tgttaagaagtttccttggattgtactgaatcaatgctcctaattgatga
tctccaacattgcctttcttttcttttttcctggaagtatattattttca
tggtgctttttactgtagtataaaatggtacaagatgttctatataatca
ttcatttagcaaacaatacaaaataggtgaatcttaaccttatataaaat
gaacaatgccacagaaactggacttcagcatatagttaagttgtacagac
tacattgttatggtcacttaaaagctatcccactgtgtgcaattttattg
agaaaagaataacaacaacaaaaaaactgaagtgaaacctgctccagaat
tgaacagtgaatctgaatgtgacatgggagttgtgttagtatacaaaata
acctgtggttactcttggttgggatttccagagatatcacctaaacttag
ttttagccatgttacattgttatggtttatgtaatcttgaacatatttag
tgtatgtactctgacatatttggacattttatgcacacccatgtgcccac
attaccacaaacaacacagttaaccttgttctccatatcttctcattcta
tccatgtgtttatgtgtctacaataatcagagttttcataaaatgacagc
atttttatggattttggcagtctgctcagtatattttccgtgcatttgaa
actggttgtaagaaatatcatgtgatatgagagttgttttggctagggtt
acaattcctgcttaacattttgactaagaaacaatgtggggaggaaaggg
tttattctgcttacactttccacattgctgttgatcaccaaataaagcca
ggactggaactctagcagtcagaagcagaactgatgcagaggccatggag
tgaagtactggcttgttttcttacagaacccaggactaccaggcaggatg
gcaccatagagcctcatagaagcaagcaagagtgggattgggcgttcacg
cagaggggggatcttggaaaggagattaacattggaat
gaattcaggattttttttttcacaatgtgaatactcaggaaatactcagt
atatgctagctaataacacaatgagttctctaaaagaaagattaaaagat
ccttatttactggtctcaggtactgttccaaatttccagaacttacacag
ggctcatatgtaattatttgactatcactcttagtcttttcagtacaagg
taaaagtgagtcaggtactttggtttaaacccagtgtcaaataaaaacaa
aacaaaaggccagacctttaagaatctctctctctctctttctctctgct
tttcgaagtttataattttattattcttttattctcataattttcatggg
ttatttatgtacatttcaaatgtttccccattcctggattggttttcacc
ctgcccctcccccaggaaactacctttctcatctcccaacccctacttca
gtgttccaccacccacccatctacttcctttccctgccctcaaattcccc
tacactggggggggggggggagcattgagccttcagaggaccaagggcct
ctccttttttcttttttctcttcccttcccttcccgtccctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_49953037_49954129
seq2: B6Ng01-240G13.b_44_1131 (reverse)

seq1  ATTCAAATGTT-ATCTCCTTTCC-AGGTTCCCCCTCTCCCTGAAACGCCC  48
      |||| |||||| ||||||||||| || | |||||||| | || |||||||
seq2  ATTCCAATGTTAATCTCCTTTCCAAGATCCCCCCTCTGCGTG-AACGCCC  49

seq1  AATCCC-CTCTTTCCCTGCTTCTATGAGGCTCTATGGTGCCATCCCTGGC  97
      |||||| ||| || | |||||||||||||||||||||||||||||   ||
seq2  AATCCCACTC-TTGCTTGCTTCTATGAGGCTCTATGGTGCCATCC--TGC  96

seq1  CTGGTAGTCCTGGGTTCTGTAAGAAAACAAGCCAGTAACTTCACTCCATG  147
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTGGTAGTCCTGGGTTCTGTAAGAAAACAAGCCAGT-ACTTCACTCCATG  145

seq1  GCCTCTGCATCAGTTCCTGCTTCCTGACCTGCTAGAGTTCCAGTCCTGGC  197
      ||||||||||||||| |||||| |||| ||||||||||||||||||||||
seq2  GCCTCTGCATCAGTT-CTGCTT-CTGA-CTGCTAGAGTTCCAGTCCTGGC  192

seq1  TTTATTTGGTGATCAACAGCAATGTGGAAAGTGTAAGCAGAATAAACCCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGGTGATCAACAGCAATGTGGAAAGTGTAAGCAGAATAAACCCT  242

seq1  TTCCTCCCCACATTGTTTCTTAGTCAAAATGTTAAGCAGGAATTGTAACC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCCCACATTGTTTCTTAGTCAAAATGTTAAGCAGGAATTGTAACC  292

seq1  CTAGCCAAAACAACTCTCATATCACATGATATTTCTTACAACCAGTTTCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAAAACAACTCTCATATCACATGATATTTCTTACAACCAGTTTCA  342

seq1  AATGCACGGAAAATATACTGAGCAGACTGCCAAAATCCATAAAAATGCTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACGGAAAATATACTGAGCAGACTGCCAAAATCCATAAAAATGCTG  392

seq1  TCATTTTATGAAAACTCTGATTATTGTAGACACATAAACACATGGATAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTATGAAAACTCTGATTATTGTAGACACATAAACACATGGATAGA  442

seq1  ATGAGAAGATATGGAGAACAAGGTTAACTGTGTTGTTTGTGGTAATGTGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAGATATGGAGAACAAGGTTAACTGTGTTGTTTGTGGTAATGTGG  492

seq1  GCACATGGGTGTGCATAAAATGTCCAAATATGTCAGAGTACATACACTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGGGTGTGCATAAAATGTCCAAATATGTCAGAGTACATACACTAA  542

seq1  ATATGTTCAAGATTACATAAACCATAACAATGTAACATGGCTAAAACTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTCAAGATTACATAAACCATAACAATGTAACATGGCTAAAACTAA  592

seq1  GTTTAGGTGATATCTCTGGAAATCCCAACCAAGAGTAACCACAGGTTATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGTGATATCTCTGGAAATCCCAACCAAGAGTAACCACAGGTTATT  642

seq1  TTGTATACTAACACAACTCCCATGTCACATTCAGATTCACTGTTCAATTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATACTAACACAACTCCCATGTCACATTCAGATTCACTGTTCAATTC  692

seq1  TGGAGCAGGTTTCACTTCAGTTTTTTTGTTGTTGTTATTCTTTTCTCAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAGGTTTCACTTCAGTTTTTTTGTTGTTGTTATTCTTTTCTCAAT  742

seq1  AAAATTGCACACAGTGGGATAGCTTTTAAGTGACCATAACAATGTAGTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGCACACAGTGGGATAGCTTTTAAGTGACCATAACAATGTAGTCT  792

seq1  GTACAACTTAACTATATGCTGAAGTCCAGTTTCTGTGGCATTGTTCATTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAACTTAACTATATGCTGAAGTCCAGTTTCTGTGGCATTGTTCATTT  842

seq1  TATATAAGGTTAAGATTCACCTATTTTGTATTGTTTGCTAAATGAATGAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAGGTTAAGATTCACCTATTTTGTATTGTTTGCTAAATGAATGAT  892

seq1  TATATAGAACATCTTGTACCATTTTATACTACAGTAAAAAGCACCATGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGAACATCTTGTACCATTTTATACTACAGTAAAAAGCACCATGAA  942

seq1  AATAATATACTTCCAGGAAAAAAGAAAAGAAAGGCAATGTTGGAGATCAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATACTTCCAGGAAAAAAGAAAAGAAAGGCAATGTTGGAGATCAT  992

seq1  CAATTAGGAGCATTGATTCAGTACAATCCAAGGAAACTTCTTAACACAGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGGAGCATTGATTCAGTACAATCCAAGGAAACTTCTTAACACAGG  1042

seq1  AACGTTGATTGCAAACTTATAAGGCATGTGGAAAAACTCAGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTGATTGCAAACTTATAAGGCATGTGGAAAAACTCAGAATTC  1088

seq1: chr7_49818885_49819476
seq2: B6Ng01-240G13.g_62_653

seq1  GAATTCAGGATTTTTTTTTTCACAATGTGAATACTCAGGAAATACTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGATTTTTTTTTTCACAATGTGAATACTCAGGAAATACTCAGT  50

seq1  ATATGCTAGCTAATAACACAATGAGTTCTCTAAAAGAAAGATTAAAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTAGCTAATAACACAATGAGTTCTCTAAAAGAAAGATTAAAAGAT  100

seq1  CCTTATTTACTGGTCTCAGGTACTGTTCCAAATTTCCAGAACTTACACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTTACTGGTCTCAGGTACTGTTCCAAATTTCCAGAACTTACACAG  150

seq1  GGCTCATATGTAATTATTTGACTATCACTCTTAGTCTTTTCAGTACAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATATGTAATTATTTGACTATCACTCTTAGTCTTTTCAGTACAAGG  200

seq1  TAAAAGTGAGTCAGGTACTTTGGTTTAAACCCAGTGTCAAATAAAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTGAGTCAGGTACTTTGGTTTAAACCCAGTGTCAAATAAAAACAA  250

seq1  AACAAAAGGCCAGACCTTTAAGAATCTCTCTCTCTCTCTTTCTCTCTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGGCCAGACCTTTAAGAATCTCTCTCTCTCTCTTTCTCTCTGCT  300

seq1  TTTCGAAGTTTATAATTTTATTATTCTTTTATTCTCATAATTTTCATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGAAGTTTATAATTTTATTATTCTTTTATTCTCATAATTTTCATGGG  350

seq1  TTATTTATGTACATTTCAAATGTTTCCCCATTCCTGGATTGGTTTTCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATGTACATTTCAAATGTTTCCCCATTCCTGGATTGGTTTTCACC  400

seq1  CTGCCCCTCCCCCAGGAAACTACCTTTCTCATCTCCCAACCCCTACTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCTCCCCCAGGAAACTACCTTTCTCATCTCCCAACCCCTACTTCA  450

seq1  GTGTTCCACCACCCACCCATCTACTTCCTTTCCCTGCCCTCAAATTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCACCACCCACCCATCTACTTCCTTTCCCTGCCCTCAAATTCCCC  500

seq1  TACACTGGGGGGGGGGGGGGAGCATTGAGCCTTCAGAGGACCAAGGGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGGGGGGGGGGGGGGAGCATTGAGCCTTCAGAGGACCAAGGGCCT  550

seq1  CTCCTTTTTTCTTTTTTCCCTTCCCTTCCCTTCCCTTCCCTT  592
      |||||||||||||||||| |||||||||||||||| ||||||
seq2  CTCCTTTTTTCTTTTTTCTCTTCCCTTCCCTTCCCGTCCCTT  592