BAC Information

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BAC

Clone NameB6Ng01-240L23
Chromosome7 (Build37)
Map Location 11,815,921 - 11,817,041
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750
Downstream geneLOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240L23.bB6Ng01-240L23.g
ACCGA050836GA050837
length1,1811,109
definitionB6Ng01-240L23.b B6Ng01-240L23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgaaaatctgacatgggaagtccttttgatatacaactggct
tatgagaaaggtaacacaatgtgttgtgccactatccagccacacaaagg
acaaaaagatttagtggtagatgtccatctttgtgcagagatctggccat
catataatcagggtttggctttcagagctgttttgcaagggaccgccata
tgagcaatgttcttgcggaaactagggaataatgcatgttttaagtgtgg
aagtttgggtcattttaaaagtgattttcctaagaacaaaggtgccgaga
gtgggcaagcaggccatgtcctaggaatttgtccccagcgcagaaaaggc
aaccattgggctaaggtgtgcaaatctaagcctggcactctggaccatcc
attgctgggaaacgagaggaggagcaagccccaggccctgacctacccat
agcaaacagcttatggggccatgaacctactgcccagccaaagagagcaa
tttttgaacttgtcagggtaaaagtaggaggtgcatgattggacctctct
tccaccacccacacagtattaaccccagaaatgggagttcaaactctgcc
tgccggagtatttggacctctacctgtagaaacttttggatttcttttag
gatgaagcagttctattgtaaaaggtgtgcagatttatccaggtgttata
aataatgattatgagggaaaaattaaaatcatagctgcttccctcatggt
gttataactgtacctgctaatcatagaattacttaacttgttttaatccc
ttttcatccaccatcatccagatttgttaagaatgagagaggacagggtg
gctttgactactcagtgcgaattgggttcaatctattactaatcagagac
ctaaccttaaattgacattttatggaaaaagctttgaaggagtgatagat
actggagctgatgtaacattattagaggacaggatggcttcagcttggcc
ttgactgatacacttactcactcagatggtatgctagtagcaaaacaaag
ctcaatgctaactgagagattggcagcatcaaaaattcagctgtatgttt
atgtgagtgctgtactctatgggaggaatccttgtcaagatgggcgttat
aatggtacagtctcctaaattgagcagtgac
gaattccaggccagcctggtcaacataaggattatcaaaatacctagccc
taaaaaaggaaccccttggggtggagaggtggcagagggcaagggatgac
aaacaaaaaaggacacttgcaaaaaagtcttacaagttagttggagggtt
taaacatttgttttgtaagaaggaaccaaactgaagccttttcaatagag
cttccattttgaacaggggtcaaataaaatttaagttcctaaagacctcc
ctgggtactgaaaaggtcaggaactttgggaaggtcttggaacacttggc
tcctcttggaagggagaggctaacatttctcagaccacagggtaggaaca
gacctgcaggtggggacacattctgcaggacagacagttgctcaccttca
gaggagtttgccattttgctgagacattagctacaccttctcctcccctc
ccagactcatgctctccccgattatcatggagtcattaacgttaagagga
ggacattcctcgaaacaggaatgtaaaaatatgtacagtgttatacaaac
aaacattactgacacttgtggaggcccacgcctgctagtcctgtcccaga
ggcaggaacaatgcatgccatgccggatctggcaaatcctgatggatggg
aatatgtaactgtaacttggcctagattttgattgtttcaggttaaattt
ttctatgatattctggcttggagtcgcttttcagctcccaagttctgtgg
cctgatcagtagcagcctgagtacaatagacttttgttatatacttgtag
atggatgtcccaagaagcagtcagctcccaagtctgtgttgcaatcccct
actggtcagtttttgctgcctaatttaatatcttgcttgtatcttgcttt
gcttgggttgttttgaatgttcagcccccaatattttgtttttcaagaca
ggatttctctgtgtagctttggctgtcctgaaacttgctctttttagatc
agctgtctcaaactcagagatgcccccatgctcctgagtgctggattaag
gtgagtgcagattgtaagatttaattccctattctataatataatttcat
cgtaattga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11815921_11817041
seq2: B6Ng01-240L23.g_63_1171

seq1  GAATTCCAGGCCAGCCTGGTCAACATAAGGATTATCAAAATACCTAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGCCTGGTCAACATAAGGATTATCAAAATACCTAGCCC  50

seq1  TAAAAAAGGAACCCCTTGGGGTGGAGAGGTGGCAGAGGGCAAGGGATGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGGAACCCCTTGGGGTGGAGAGGTGGCAGAGGGCAAGGGATGAC  100

seq1  AAACAAAAAAGGACACTTGCAAAAAAGTCTTACAAGTTAGTTGGAGGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAAGGACACTTGCAAAAAAGTCTTACAAGTTAGTTGGAGGGTT  150

seq1  TAAACATTTGTTTTGTAAGAAGGAACCAAACTGAAGCCTTTTCAATAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTTGTTTTGTAAGAAGGAACCAAACTGAAGCCTTTTCAATAGAG  200

seq1  CTTCCATTTTGAACAGGGGTCAAATAAAATTTAAGTTCCTAAAGACCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATTTTGAACAGGGGTCAAATAAAATTTAAGTTCCTAAAGACCTCC  250

seq1  CTGGGTACTGAAAAGGTCAGGAACTTTGGGAAGGTCTTGGAACACTTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTACTGAAAAGGTCAGGAACTTTGGGAAGGTCTTGGAACACTTGGC  300

seq1  TCCTCTTGGAAGGGAGAGGCTAACATTTCTCAGACCACAGGGTAGGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTGGAAGGGAGAGGCTAACATTTCTCAGACCACAGGGTAGGAACA  350

seq1  GACCTGCAGGTGGGGACACATTCTGCAGGACAGACAGTTGCTCACCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCAGGTGGGGACACATTCTGCAGGACAGACAGTTGCTCACCTTCA  400

seq1  GAGGAGTTTGCCATTTTGCTGAGACATTAGCTACACCTTCTCCTCCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTTTGCCATTTTGCTGAGACATTAGCTACACCTTCTCCTCCCCTC  450

seq1  CCAGACTCATGCTCTCCCCGATTATCATGGAGTCATTAACGTTAAGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTCATGCTCTCCCCGATTATCATGGAGTCATTAACGTTAAGAGGA  500

seq1  GGACATTCCTCGAAACAGGAATGTAAAAATATGTACAGTGTTATACAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTCCTCGAAACAGGAATGTAAAAATATGTACAGTGTTATACAAAC  550

seq1  AAACATTACTGACACTTGTGGAGGCCCACGCCTGCTAGTCCTGTCCCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTACTGACACTTGTGGAGGCCCACGCCTGCTAGTCCTGTCCCAGA  600

seq1  GGCAGGAACAATGCATGCCATGCCGGATCTGGCAAATCCTGATGGATGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAACAATGCATGCCATGCCGGATCTGGCAAATCCTGATGGATGGG  650

seq1  AATATGTAACTGTAACTTGGCCTAGATTTTGATTGTTTCAGGTTAAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTAACTGTAACTTGGCCTAGATTTTGATTGTTTCAGGTTAAATTT  700

seq1  TTCTATGATATTCTGGCTTGGAGTCGCTTTTCAGCTCCCAAGTTCTGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGATATTCTGGCTTGGAGTCGCTTTTCAGCTCCCAAGTTCTGTGG  750

seq1  CCTGATCAGTAGCAGCCTGAGTACAATAGACTTTTGTTATATACTTGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATCAGTAGCAGCCTGAGTACAATAGACTTTTGTTATATACTTGTAG  800

seq1  ATGGATGTCCCAAGAAGCAGTCAGCTCCCAAGTCTGTGTTGCAATCCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGTCCCAAGAAGCAGTCAGCTCCCAAGTCTGTGTTGCAATCCCCT  850

seq1  ACTGGTCAGTTTTTGCTGCCTAATTTAATATCTTGCTTTGTATCTTGCTT  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTGGTCAGTTTTTGCTGCCTAATTTAATATCTTGC-TTGTATCTTGCTT  899

seq1  TGCTTGGGTTGTTTTGAATGTTCAGCCCCCAATATTTTGTTTTTCAAGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGGTTGTTTTGAATGTTCAGCCCCCAATATTTTGTTTTTCAAGAC  949

seq1  AGGATTTCTCTGTGTAGCTTTGGCTGTCCTGGAACTTGCTC-TTTTAGAT  999
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  AGGATTTCTCTGTGTAGCTTTGGCTGTCCTGAAACTTGCTCTTTTTAGAT  999

seq1  CAGGCTGGTCTCAAACTCAGAGATGCCCCCATGCCTCCTGAGTGCTGGGA  1049
      || ||| |||||||||||||||||||||||||| |||||||||||| |||
seq2  CA-GCT-GTCTCAAACTCAGAGATGCCCCCATG-CTCCTGAGTGCT-GGA  1045

seq1  TTAAAGGTGAGTGCAGGATTTGTAAAGATTTTAATTCCCTATTCTAATAA  1099
      || |||||||||||||   |||| |||| |||||||||||||||||   |
seq2  TT-AAGGTGAGTGCAG--ATTGT-AAGA-TTTAATTCCCTATTCTA--TA  1088

seq1  ATATAAATTTCATCGTATTTGA  1121
      |||| |||||||||||| ||||
seq2  ATAT-AATTTCATCGTAATTGA  1109