BAC Information

Click to search

BAC

Clone NameB6Ng01-240O17
Chromosome7 (Build37)
Map Location 11,975,891 - 11,977,044
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861
Downstream geneZscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240O17.bB6Ng01-240O17.g
ACCGA050964GA050965
length1,2131,136
definitionB6Ng01-240O17.b B6Ng01-240O17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccttgtctgggtaagactggctactgtcccaagtaaacactctg
cagactagccctgagctattctagcttgctctttgtaatgcctaattagt
ttcattgtctcttccaagctcctaggtttcaagcattttctaggacattg
gaacacactggctaaggcttagatatgtcagaattcaatcttaaaaggca
cttataataagataatactaaaagagagcacaatggatccatacaccaga
caaacgtgggaatagggtatgagtatgagaaccaaagttccaggaggtga
gtttcctgtgaaactctttgcctcatgagtgctcccaggactctcggcct
gccaagaaaacttcactggagtgtgcatagcattctccccctttcttttt
atatgtctgccaaagttctggaatgtcctgcctcatcgtagctacagatc
acaggaatgctctaaagatgagtggaaacacaacaatttattaataaaat
agtgccaataataatagcaagtaggaatatatattgaacccagtccagaa
gattcaatgcacttaggttattttttacatttctggccaattcatcaatg
ttccaagtgtccaagtgacttttgctaatatctgaaatttttgcctttct
agccttaatatatgctatgtcctgacctattgttaagactactacttcta
agacattgacctttgcctcctattttttacatggctctatggtgtattat
taataaaccacaacctcttggcatgtacctctgtcttagattaatatgat
tccgaagtctggttgccagtcattggctaaccggccctcatagcacacct
tattcccaaatcagaccaaaagccacgatatatattgaatatgcttcttc
atattgattaacaactgtcacctacacttttggaggcaagggggcacacc
tgctacagtcagctgaagatcattgactggcctgctttaaaaaacaaagt
tgagacagtgaaaagcaacagtacaaaagctttctttggggaagtccagg
gtactccattcaatgcaaatagcatgatcaattagacttaagaagcctcc
gaatggtgtggggagggtgacttggagaaactccagaagcttgtactttc
tgggaaaagccttgctcagtacttttggcctagaagaatttagcttatat
tatccagggtgat
gaattcactatgaagcccatgtcttgtcatgtacccaatggacaccctgg
gctgtgcaaagtagactggcctcaagcagtacatctttgtgggatagttt
tacataatgtgcattcaaatgctgatttctgtgcaaggacacctaattgc
tattggctgttggcactgtcataattgttgaagcatctcctgtctcaagg
ttgtgaaaaattgttctccatcacctctgattggctaaatgtggagagct
tttgaggttgcttctaggaaggtcaacctgatcaacccctagacacggta
agaatgggactttgtttattgcctgtttgattactttgactattgtctag
tttgttccttatttatgctttgttttttccttaactattttgtttatgcc
ttaggactggccatatactttgtgtgaacctagaatggtataaaagcaga
atggaaaaaaattaagcaggccttcagcttcagaactggctggggtcatg
ttacagtgtcgtccaattgtctttttcttatcaatccttgctcccttcct
gaagaacccattgactgactgagctggcttggtcagttaataaagatcca
aatagccaatagctgggcaggagagataaaataggattttccatcccagt
gagggctcaaaggtggaaatagagatcaagaagggtgtcatgagggagtc
ttcatgaggagatgttggagcaggaggagccagggaaagactaagatggc
aggtaacaagacatgggactggaaaatagtccaggccataatagtcgggt
cagaatagtaaaatttctgtccagctgtaattctccaagcttctgtataa
atataatctctgtgtcattatgtgggaggaaccacagttacacttttaca
tgacaaagtcctcctgcctcagccacttgtaggcacaccccactacactc
ggtggtttcttttcttctctttttctctggagaaaggatctcacatgtaa
ccctagctgactcatagacgccacctgttttctgtcccctggagtgtagt
aaaggctgtaccaccatgccagaatatacattgattctttagtaatattg
tggtttacatgcatgtgtgtgaatgttttgaactgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11975891_11977044
seq2: B6Ng01-240O17.g_63_1198

seq1  GAATTCACTATGAAGCCCATGTCTTGTCATGTACCCAATGGACACCCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGAAGCCCATGTCTTGTCATGTACCCAATGGACACCCTGG  50

seq1  GCTGTGCAAAGTAGAAAGGCCTCAAGCAGTACATCTTTGTGGGATAGTTT  100
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  GCTGTGCAAAGTAGACTGGCCTCAAGCAGTACATCTTTGTGGGATAGTTT  100

seq1  TACATAATGTGCATTCAAATACTGATTTCTGTGCAAGGACACCTAATTGC  150
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TACATAATGTGCATTCAAATGCTGATTTCTGTGCAAGGACACCTAATTGC  150

seq1  TATTGGCTGTTGGCAGTGTCATAATTGTTGAAGCATCTCCTGTCTCAAGG  200
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATTGGCTGTTGGCACTGTCATAATTGTTGAAGCATCTCCTGTCTCAAGG  200

seq1  TTGTGTAAAAATTGTTCTTCATCACCTCTGTTTGGCTAAATGTGGAGAGC  250
      ||||| |||||||||||| ||||||||||| |||||||||||||||||||
seq2  TTGTG-AAAAATTGTTCTCCATCACCTCTGATTGGCTAAATGTGGAGAGC  249

seq1  TTTTGAGGTTGCTTCTAGGAAGGTCAACCTGATCAACCCCTAGACACGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGGTTGCTTCTAGGAAGGTCAACCTGATCAACCCCTAGACACGGT  299

seq1  GAGAATGGGACTTTGTTTATTGCCTGTTTGATTACTTTTATTATTGTCTA  350
       ||||||||||||||||||||||||||||||||||||| | |||||||||
seq2  AAGAATGGGACTTTGTTTATTGCCTGTTTGATTACTTTGACTATTGTCTA  349

seq1  GTTTGTTCCTTATTTATGCTTTGTTTTTT-CTTAACTATTTTGTTTATGC  399
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTTTGTTCCTTATTTATGCTTTGTTTTTTCCTTAACTATTTTGTTTATGC  399

seq1  CTTAGGACTGGCCATATACTTTGTGTGTACCTAGAATGGTATAAAAGCAG  449
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTAGGACTGGCCATATACTTTGTGTGAACCTAGAATGGTATAAAAGCAG  449

seq1  AATGGAAAAAAA-TAAACAGACCTTCAGCTTCAGAACTGGCTAGGGTCAT  498
      |||||||||||| ||| ||| ||||||||||||||||||||| |||||||
seq2  AATGGAAAAAAATTAAGCAGGCCTTCAGCTTCAGAACTGGCTGGGGTCAT  499

seq1  GTTACAGTGTTGTCCAGTTGTCTTTTTCTTTTCAATCCTTGTTCCCTTCC  548
      |||||||||| ||||| ||||||||||||| |||||||||| ||||||||
seq2  GTTACAGTGTCGTCCAATTGTCTTTTTCTTATCAATCCTTGCTCCCTTCC  549

seq1  TGAAGAACCCATTGACTGTCTGAGCTGGCTGGGTCAGTTAATAAAGATCT  598
      |||||||||||||||||| ||||||||||| |||||||||||||||||| 
seq2  TGAAGAACCCATTGACTGACTGAGCTGGCTTGGTCAGTTAATAAAGATCC  599

seq1  AAATAGACAATAGCTGGGCAGGAGAGATAAAATAGGATTTTCCATCCCAG  648
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCCAATAGCTGGGCAGGAGAGATAAAATAGGATTTTCCATCCCAG  649

seq1  TGAGGGGGTTAAAGGTGGGGGGCAGAGATCAAGAAGGGTGTCATGAGTGA  698
      ||| ||| | |||||| ||    |||||||||||||||||||||||| ||
seq2  TGA-GGGCTCAAAGGT-GGAAATAGAGATCAAGAAGGGTGTCATGAGGGA  697

seq1  GGCTTCATGAGGAGATGTTGGAGCAGGAGGAGCCAGGGAAAGACTAAGAT  748
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCATGAGGAGATGTTGGAGCAGGAGGAGCCAGGGAAAGACTAAGAT  747

seq1  GGCAGGTAACAAGACATGGGACTGGAAAATAATCCAGGCCATGATAGTCG  798
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  GGCAGGTAACAAGACATGGGACTGGAAAATAGTCCAGGCCATAATAGTCG  797

seq1  GGTCAGAATAGATACATTTCTGTCCAGCTGTAATTCTTGAAGCTTCTGTA  848
      |||||||||||  | ||||||||||||||||||||||  |||||||||||
seq2  GGTCAGAATAGTAAAATTTCTGTCCAGCTGTAATTCTCCAAGCTTCTGTA  847

seq1  TGAATATAATCTCTGTGTCATTATGTGGGAGGACACAGAAGAAAGACCAC  898
      | |||||||||||||||||||||||||||||||            |||||
seq2  TAAATATAATCTCTGTGTCATTATGTGGGAGGA------------ACCAC  885

seq1  AGTTACACTTTTACATGACACAGTCCTCCTGCCTCAGCCACTTGTAGGCA  948
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGTTACACTTTTACATGACAAAGTCCTCCTGCCTCAGCCACTTGTAGGCA  935

seq1  CACCCCACTACACTTGGTGTTTTCTTTTTCTTCTTCTTTTTCTCTGGAGA  998
      |||||||||||||| |||| |||| |||||||| ||||||||||||||||
seq2  CACCCCACTACACTCGGTGGTTTC-TTTTCTTC-TCTTTTTCTCTGGAGA  983

seq1  AAGGATCTTACCATGTAGCCATAGCTGAACTCAAAGACG-CACCTG-TTT  1046
      |||||||| | |||||| || |||||| ||||| ||||| |||||| |||
seq2  AAGGATCTCA-CATGTAACCCTAGCTG-ACTCATAGACGCCACCTGTTTT  1031

seq1  CTGTCCCCT-GAGTGTTAGTAAAGGCTTGTACCACCATGCCCAGATATAC  1095
      ||||||||| ||||| |||||||||| ||||||||||||||   ||||||
seq2  CTGTCCCCTGGAGTG-TAGTAAAGGC-TGTACCACCATGCCAGAATATAC  1079

seq1  ATTTGGTTTCTTTTAGTAAATATTGT-GTGTATGTGCATGTGTGTGAATA  1144
      |||  | ||| |||||| |||||||| || ||  ||||||||||||||| 
seq2  ATT--GATTC-TTTAGT-AATATTGTGGTTTACATGCATGTGTGTGAATG  1125

seq1  TTTTG-ACTGC  1154
      ||||| |||||
seq2  TTTTGAACTGC  1136