BAC Information

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BAC

Clone NameB6Ng01-241H16
Chromosome7 (Build37)
Map Location 20,259,110 - 20,424,385
singlet/doubletdoublet
Overlap geneApoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3
Upstream geneEG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1
Downstream geneCeacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559, LOC667311
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241H16.bB6Ng01-241H16.g
ACCGA051381GA051382
length759692
definitionB6Ng01-241H16.b B6Ng01-241H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,259,110 - 20,259,860)(20,423,697 - 20,424,385)
sequence
gaattctactctagagggttgcttttttaggagggaggggtggcaaaggg
gggcaggataacacaaggtctcactgtgtagcactgattggcctggagct
cactctgtaaaacagactggcttcaaactcagagagtcacctatcttgag
ctctcaagcagtagtgttgattgtgtgtgccattacacctgggcgcgcac
gcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgtgtgtgtag
ccaggcatagtagtacatgcatttaatcctagaacttaggaggcagaggc
agatggctctctatgtgttcaagttgaagttcagtccagtctacaatgtg
aattctaggacagcctgagctatacagagtgataccctgtctggaaaaaa
aaacataacaaaatgataataataaaatcaatgtatgtggctattttgcc
ttcgtgtatatagatgcacgtagtgcaggtctagtccctgtagaggccag
aaaacagcttggattccaagaaactggaattagagatgtagtgaagcgtt
tgtttgtttgtttgttgttgttttgtttttgacagggtttctctgtagcc
ttggctgtagtggaactcgctctgtagaccagactgtccttcgaacagtg
cttggatttaaaagtgagtgccggggctggatgttgatggcacagcggga
ataaaggactgatgtgctcttctgaaaggtcctgagttcaaatcccagca
ccaccatgg
gaattcactgtctctggctgtctatctgggccagggcagctatcttagaa
tctatccatgtgggcagagaagcccaggcatgcaggaaccaagaaagtga
ggccaggaatggggaggacaccaggaggagggtggaagcaagagtagcta
gggcacaagaggaaggtcgaccagaagtcaagcctgtgccctcacatctc
agttcccacaccacctaggaggccaaacctatgaagtatttttgttcccc
aagttcaagatcatgtgtctaatgctcacacacaagaaatctggatcatt
cctacctttttaagattttttttctgttttattcaatgttaggatacact
aagcaagatgtcacaccccagccccccactgggggattctaggcaggtgc
tctaccactgagccacaccccagtccctcactggggatcctaggcagggg
ctctcttcattaacagtttctttttcttttttttttttacgatttatgta
tttattttatgtatatgagtacactgtatgttgtgagccttcatgtattt
tgttgggtattgaacttatgacctctgcttgctccagttggccctgcttt
gctcagctcactctggcccaaagatttttttttttttataaataagttct
ctgttatctgtctttagacacaccaaataagggcgtcgtatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_20259110_20259860
seq2: B6Ng01-241H16.b_46_804

seq1  GAATTCTACTCTAGAGGGTTGCTTTTTTAGGAGGGAGGGGTGGCAAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTCTAGAGGGTTGCTTTTTTAGGAGGGAGGGGTGGCAAAGGG  50

seq1  GGGCAGGATAACACAAGGTCTCACTGTGTAGCACTGATTGGCCTGGAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGATAACACAAGGTCTCACTGTGTAGCACTGATTGGCCTGGAGCT  100

seq1  CACTCTGTAAAACAGACTGGCTTCAAACTCAGAGAGTCACCTATCTTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTAAAACAGACTGGCTTCAAACTCAGAGAGTCACCTATCTTGAG  150

seq1  CTCTCAAGCAGTAGTGTTGATTGTGTGTGCCATTACACCTGGGCGCGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAGCAGTAGTGTTGATTGTGTGTGCCATTACACCTGGGCGCGCAC  200

seq1  GCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGTGTGTGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGTGTGTGTAG  250

seq1  CCAGGCATAGTAGTACATGCATTTAATCCTAGAACTTAGGAGGCAGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCATAGTAGTACATGCATTTAATCCTAGAACTTAGGAGGCAGAGGC  300

seq1  AGATGGCTCTCTATGTGTTCAAGTTGAAGTTCAGTCCAGTCTACAATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTCTCTATGTGTTCAAGTTGAAGTTCAGTCCAGTCTACAATGTG  350

seq1  AATTCTAGGACAGCCTGAGCTATACAGAGTGATACCCTGTCTGGAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAGGACAGCCTGAGCTATACAGAGTGATACCCTGTCTGGAAAAAA  400

seq1  AAACATAACAAAATGATAATAATAAAATCAATGTATGTGGCTATTTTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAACAAAATGATAATAATAAAATCAATGTATGTGGCTATTTTGCC  450

seq1  TTCGTGTATATAGATGCACGTAGTGCAGGTCTAGTCCCTGTAGAGGCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGTATATAGATGCACGTAGTGCAGGTCTAGTCCCTGTAGAGGCCAG  500

seq1  AAAACAGCTTGGATTCCAAGAAACTGGAATTAGAGATGTAGTGAAGCGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCTTGGATTCCAAGAAACTGGAATTAGAGATGTAGTGAAGCGTT  550

seq1  TGTTTGTTTGTTTGTTGTTGTTTTGTTTTTGACAGGGTTTCTCTGTAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTGTTGTTGTTTTGTTTTTGACAGGGTTTCTCTGTAGCC  600

seq1  TTGGCTGTTCTGGAACTCGCTCTGTAGACCAGACTGTCC-TCGAACAGTG  649
      ||||||||  ||||||||||||||||||||||||||||| ||||||||||
seq2  TTGGCTGTAGTGGAACTCGCTCTGTAGACCAGACTGTCCTTCGAACAGTG  650

seq1  CTAGGA-TTAAAAGTGAGTGCC-GGGCTGG-TG-TGATGGCTCAGCGGCT  695
      || ||| ||||||||||||||| ||||||| || ||||||| ||||||  
seq2  CTTGGATTTAAAAGTGAGTGCCGGGGCTGGATGTTGATGGCACAGCGGGA  700

seq1  A-AGAGCACTGATG-GCTCTTCTG-AAGGTCCTGAGTTCAAATCCCAGCA  742
      | | || ||||||| ||||||||| |||||||||||||||||||||||||
seq2  ATAAAGGACTGATGTGCTCTTCTGAAAGGTCCTGAGTTCAAATCCCAGCA  750

seq1  ACCACATGG  751
       |  |||||
seq2  CCACCATGG  759

seq1: chr7_20423697_20424385
seq2: B6Ng01-241H16.g_65_756 (reverse)

seq1  GATACGACGCCCTCTTCTGGTGTGTCTAAAGACAGCT-ACAGTGTACTTA  49
      |||||||||||||  | |||||||||||||||||| | |||| | |||||
seq2  GATACGACGCCCTTATTTGGTGTGTCTAAAGACAGATAACAGAGAACTTA  50

seq1  TTTATAATAATAAATAAATCTTTGGGCCAGAGTGAGCTGAGC-AAGCAGG  98
      ||||||| || ||| ||||||||||||||||||||||||||| |||||||
seq2  TTTATAAAAAAAAAAAAATCTTTGGGCCAGAGTGAGCTGAGCAAAGCAGG  100

seq1  GCCAACTGGAGCAAGCAGAGGTCATAAGTTCAATACCCAAC-AACTACAT  147
      ||||||||||||||||||||||||||||||||||||||||| || |||||
seq2  GCCAACTGGAGCAAGCAGAGGTCATAAGTTCAATACCCAACAAAATACAT  150

seq1  GAAGGCTCACAACCTACAGTGTACTCATATACATAAAATAAATACATAAA  197
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTCACAACATACAGTGTACTCATATACATAAAATAAATACATAAA  200

seq1  TCGTAAAAAAAAAAAAGAAAAAGAAACTGTTAATGAAGAGAGCCCCTGCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAAAAAAAAAAAAGAAAAAGAAACTGTTAATGAAGAGAGCCCCTGCC  250

seq1  TAGGATCCCCAGTGAGGGACTGGGGTGTGGCTCAGTGGTAGAGCACCTGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCCCCAGTGAGGGACTGGGGTGTGGCTCAGTGGTAGAGCACCTGC  300

seq1  CTAGAATCCCCCAGTGGGGGGCTGGGGTGTGACATCTTGCTTAGTGTATC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATCCCCCAGTGGGGGGCTGGGGTGTGACATCTTGCTTAGTGTATC  350

seq1  CTAACATTGAATAAAACAGAAAAAAAATCTTAAAAAGGTAGGAATGATCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATTGAATAAAACAGAAAAAAAATCTTAAAAAGGTAGGAATGATCC  400

seq1  AGATTTCTTGTGTGTGAGCATTAGACACATGATCTTGAACTTGGGGAACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTTGTGTGTGAGCATTAGACACATGATCTTGAACTTGGGGAACA  450

seq1  AAAATACTTCATAGGTTTGGCCTCCTAGGTGGTGTGGGAACTGAGATGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTTCATAGGTTTGGCCTCCTAGGTGGTGTGGGAACTGAGATGTG  500

seq1  AGGGCACAGGCTTGACTTCTGGTCGACCTTCCTCTTGTGCCCTAGCTACT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACAGGCTTGACTTCTGGTCGACCTTCCTCTTGTGCCCTAGCTACT  550

seq1  CTTGCTTCCACCCTCCTCCTGGTGTCCTCCCCATTCCTGGCCTCACTTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCCACCCTCCTCCTGGTGTCCTCCCCATTCCTGGCCTCACTTTC  600

seq1  TTGGTTCCTGCATGCCTGGGCTTCTCTGCCCACATGGATAGATTCTAAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCCTGCATGCCTGGGCTTCTCTGCCCACATGGATAGATTCTAAGA  650

seq1  TAGCTGCCCTGGCCCAGATAGACAGCCAGAGACAGTGAATTC  689
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCCCTGGCCCAGATAGACAGCCAGAGACAGTGAATTC  692