BAC Information

Click to search

BAC

Clone NameB6Ng01-241N19
Chromosome7 (Build37)
Map Location 35,557,469 - 35,735,059
singlet/doubletdoublet
Overlap geneChst8, Pepd
Upstream geneLOC627079, LOC635803, Abpg, LOC100043864, LOC100043865, Abpb, Abpa, LOC100043866, LOC100043867, LOC100043868, Wtip, Sae2, LOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734, Lsm14a, LOC668460, LOC668464, Kctd15
Downstream geneCebpg, Cebpa, Slc7a10, Wdr88, Gpatch1, Rhpn2, C230052I12Rik, Ccdc123, Slc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241N19.bB6Ng01-241N19.g
ACCGA051669GA051670
length1,1851,108
definitionB6Ng01-241N19.b B6Ng01-241N19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,733,890 - 35,735,059)(35,557,469 - 35,558,587)
sequence
gaattccagacagaaacacactcagacacacagaagagtccaaaggacta
tgtggatgagtttaactctaagtgatgacattcaggtattctacactgtg
gcctaggtgctaatagcacgttcactgacgagaatatgttcactatgcaa
aaacaacaaaaccctatcatgtctgtgggggtaagaggataccctaggag
tggacggtggagaatggaagggtgaacagatagggcctagcatctgagcc
aggtctctctcaccccacaccccgggcatggaatttctaatccactaaag
gagccccctaccctcccacacacatacatttcctaaaagggcgttgggga
cagttctcccttcatggagatttccatgggccataatttgaagctcaacc
ctaaatattaacttgatatgcaagttaaccgttacccaaaagtcatggtc
cccaaaccacaaattggcattttgctgtaaattgtcacgttttaataatg
tccctctaacttcctaggttttaaaattcacatcgttgaatattaatatc
cttgcattagcaagtcccaaattcagcatttcatatttaactgcttattt
aaatggaattaatttgtaaccaattgtcttcaaatatgcaaggcaattta
actaaatgccaaaagataagaaatatgcttgttctcaatagccagctgat
gtgaaataaggaccatatttctctctcagatgacggcgtgaaacggcaaa
ctctgtaattggctgtctccacccagaattcatgcacataggttctgcat
gtctggaagggcgatggcctggtaccaaggaagtgtccccactacctctc
tcgactctgagggatgggtggctctcagcttaggccacatgctcattcca
tagagccttcacggtcagcatccctattttcaaggaaactctgcccttac
cattgacttcctcaggcactgacaaagatgccacgcatctggccttggtc
atgggctgctggagccaagtttttgagggcccttgggtgccttggagttc
cagaaggacatgttcttcagttcctccttccactgccagttctgtctcct
tattctctgccttctcttagctcccctccagccctatggagcagcccttg
ttctaacgcaagtccggctatgagaagcctaagcc
gaattccactctgttgcaaaaaaaaaaaaaaaaaaaaaaaaaccaaaaaa
aaaaccaaaaaaaaaaagaaataaagaaaacaataacaacaacaaaaccc
aaacccggacctttcctcaaagcacttcttcatgatgaaagagaaaagac
ctttatgacatgtaataggaagaatgatgcctataaatgcacagggacag
ctcatgagaagggggtcatgagacaagtcctcaaaatccccaaatcagag
cctcatacagggaagtggtgaaaagctctgcttcctatcatcgtttggct
gcaaaaatataatttttatccctgcaacaaagtatccccagctataatta
tataatatatattagttatatacacataactaacataactaatatatatt
ctatatatgacataaataaattatatattctatatatgacataaataaat
tatatattctatatataacatataaattatatattctatatataacatat
ataaattatatattctatatataacatatataaattatgttatatataac
taatatatactatataactatataataaatatcttcttcagctaatctcc
tctttcctcagtaaccctgatacactgtcatgtggggtcctctgatctgg
ctcctcctcctcctgcaaaactgtgcaacaccctgcaaccatacctgggg
ggaaaggtgcaataatttcactgatatttttccaaactctacttgcacag
aagcatccttgcagccccacaaagccgcctcacctcacctcttcgtgttt
cagtggaccaagccaaacacccatcttggtggagcctgcaggttctctct
aagcccagctctgaagatggtcaatgaaggccccccaaaggaaggcaagg
tttggagaggcacacaccggaatgggaaaactgggatccccaggccagga
ggctttgtcccctggcaacatcactgcgacgcagtctattcaatcccttc
caacacaatgtagtatgtgcagcagcttttgcagagacacatagagagca
gagtcaaggaggagggaactcagtgtctcttcctgaacacacaagacctt
ctcgttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_35733890_35735059
seq2: B6Ng01-241N19.b_49_1233 (reverse)

seq1  GGCTTAGGC-TCTCATTGCCGGGCTCTGCTGTAGGGACAAGGGCTGCTCC  49
      ||||||||| |||||| ||||| || ||| ||  | ||||||||||||||
seq2  GGCTTAGGCTTCTCATAGCCGGACT-TGC-GTTAGAACAAGGGCTGCTCC  48

seq1  ATA-GGCTGGA-GGGAGCT-AGAG-AGGCAGAG-ATAGGGAGGACAGACC  94
      ||| ||||||| ||||||| |||| |||||||| ||| ||| |||||| |
seq2  ATAGGGCTGGAGGGGAGCTAAGAGAAGGCAGAGAATAAGGA-GACAGAAC  97

seq1  T-GCAGTG--AAGAGGACTTGA--GACATGT-CTTCTGG-ACTCC-AGGC  136
      | ||||||  | |||||  |||   |||||| ||||||| ||||| ||||
seq2  TGGCAGTGGAAGGAGGAACTGAAGAACATGTCCTTCTGGAACTCCAAGGC  147

seq1  ACCCAGGGCCCCTCAAAAACTTGGCTCCAGCAGCCCATGACCAA-GCCAG  185
      ||||| || ||||||||||||||||||||||||||||||||||| |||||
seq2  ACCCAAGGGCCCTCAAAAACTTGGCTCCAGCAGCCCATGACCAAGGCCAG  197

seq1  ATGCCGTGCATCTTTGTCAGTGCCTGAGGAAGTCAAT-GTTAGGGCAGAG  234
      ||||   |||||||||||||||||||||||||||||| || |||||||||
seq2  ATGCGTGGCATCTTTGTCAGTGCCTGAGGAAGTCAATGGTAAGGGCAGAG  247

seq1  TTTCCT--GAAATAGGGATGCTGACCGTGAAGGCTCTATGGAATGAGCAT  282
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGAAAATAGGGATGCTGACCGTGAAGGCTCTATGGAATGAGCAT  297

seq1  GTGGCCTAAGCTGAGAGCCACCCATCCCTCAGAGTCGAGAGAGGTAGTGG  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTAAGCTGAGAGCCACCCATCCCTCAGAGTCGAGAGAGGTAGTGG  347

seq1  GGACACTTCCTTGGTACCAGGCCATCGCCCTTCCAGACATGCAGAACCTA  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTTCCTTGGTACCAGGCCATCGCCCTTCCAGACATGCAGAACCTA  397

seq1  TGTGCATGAATTCTGGGTGGAGACAGCCAATTACAGAGTTTGCCGTTTCA  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGAATTCTGGGTGGAGACAGCCAATTACAGAGTTTGCCGTTTCA  447

seq1  CGCCGTCATCTGAGAGAGAAATATGGTCCTTATTTCACATCAGCTGGCTA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGTCATCTGAGAGAGAAATATGGTCCTTATTTCACATCAGCTGGCTA  497

seq1  TTGAGAACAAGCATATTTCTTATCTTTTGGCATTTAGTTAAATTGCCTTG  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAACAAGCATATTTCTTATCTTTTGGCATTTAGTTAAATTGCCTTG  547

seq1  CATATTTGAAGACAATTGGTTACAAATTAATTCCATTTAAATAAGCAGTT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTGAAGACAATTGGTTACAAATTAATTCCATTTAAATAAGCAGTT  597

seq1  AAATATGAAATGCTGAATTTGGGACTTGCTAATGCAAGGATATTAATATT  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGAAATGCTGAATTTGGGACTTGCTAATGCAAGGATATTAATATT  647

seq1  CAACGATGTGAATTTTAAAACCTAGGAAGTTAGAGGGACATTATTAAAAC  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGATGTGAATTTTAAAACCTAGGAAGTTAGAGGGACATTATTAAAAC  697

seq1  GTGACAATTTACAGCAAAATGCCAATTTGTGGTTTGGGGACCATGACTTT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAATTTACAGCAAAATGCCAATTTGTGGTTTGGGGACCATGACTTT  747

seq1  TGGGTAACGGTTAACTTGCATATCAAGTTAATATTTAGGGTTGAGCTTCA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAACGGTTAACTTGCATATCAAGTTAATATTTAGGGTTGAGCTTCA  797

seq1  AATTATGGCCCATGGAAATCTCCATGAAGGGAGAACTGTCCCCAACGCCC  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGGCCCATGGAAATCTCCATGAAGGGAGAACTGTCCCCAACGCCC  847

seq1  TTTTAGGAAATGTATGTGTGTGGGAGGGTAGGGGGCTCCTTTAGTGGATT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGAAATGTATGTGTGTGGGAGGGTAGGGGGCTCCTTTAGTGGATT  897

seq1  AGAAATTCCATGCCCGGGGTGTGGGGTGAGAGAGACCTGGCTCAGATGCT  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCCATGCCCGGGGTGTGGGGTGAGAGAGACCTGGCTCAGATGCT  947

seq1  AGGCCCTATCTGTTCACCCTTCCATTCTCCACCGTCCACTCCTAGGGTAT  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTATCTGTTCACCCTTCCATTCTCCACCGTCCACTCCTAGGGTAT  997

seq1  CCTCTTACCCCCACAGACATGATAGGGTTTTGTTGTTTTTGCATAGTGAA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTACCCCCACAGACATGATAGGGTTTTGTTGTTTTTGCATAGTGAA  1047

seq1  CATATTCTCGTCAGTGAACGTGCTATTAGCACCTAGGCCACAGTGTAGAA  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCTCGTCAGTGAACGTGCTATTAGCACCTAGGCCACAGTGTAGAA  1097

seq1  TACCTGAATGTCATCACTTAGAGTTAAACTCATCCACATAGTCCTTTGGA  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGAATGTCATCACTTAGAGTTAAACTCATCCACATAGTCCTTTGGA  1147

seq1  CTCTTCTGTGTGTCTGAGTGTGTTTCTGTCTGGAATTC  1170
      ||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGTGTGTCTGAGTGTGTTTCTGTCTGGAATTC  1185

seq1: chr7_35557469_35558587
seq2: B6Ng01-241N19.g_64_1171

seq1  GAATTCCACTCTGTTGCAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCTGTTGCAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAA  50

seq1  AAAACCAAAAAAAAAAAGAAATAAAGAAAACAATAACAACAACAAAACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAAAAAAAAAGAAATAAAGAAAACAATAACAACAACAAAACCC  100

seq1  AAACCCGGACCTTTCCTCAAAGCACTTCTTCATGATGAAAGAGAAAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCGGACCTTTCCTCAAAGCACTTCTTCATGATGAAAGAGAAAAGAC  150

seq1  CTTTATGACATGTAATAGGAAGAATGATGCCTATAAATGCACAGTGACAG  200
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTTATGACATGTAATAGGAAGAATGATGCCTATAAATGCACAGGGACAG  200

seq1  CTCATGAGAAGGGTGTCATGAGACAAGTCCTCAAAATCCCCAAATCAGAG  250
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTCATGAGAAGGGGGTCATGAGACAAGTCCTCAAAATCCCCAAATCAGAG  250

seq1  CCTCATACAGGGAAGTGGTGAAAAGCTCTGCTTCCTATCATCGTTTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATACAGGGAAGTGGTGAAAAGCTCTGCTTCCTATCATCGTTTGGCT  300

seq1  GCAAAAATATAATTTTTATCCCTGCAACAAAGTATCCCCAGCTATAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAATATAATTTTTATCCCTGCAACAAAGTATCCCCAGCTATAATTA  350

seq1  TATAATATATATTAGTTATATACACATAACTAACATAACTAATATATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATATATTAGTTATATACACATAACTAACATAACTAATATATATT  400

seq1  CTATATATGACATAAATAAATTATATATTCTATATATGACATAAATAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATATGACATAAATAAATTATATATTCTATATATGACATAAATAAAT  450

seq1  TATATATTCTATATATAACATATAAATTATATATTCTATATATAACATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTCTATATATAACATATAAATTATATATTCTATATATAACATAT  500

seq1  ATAAATTATATATTCTATATATAACATATATAAATTATGTTATATATAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTATATATTCTATATATAACATATATAAATTATGTTATATATAAC  550

seq1  TAATATATACTATATAACTATATAATAAATATCTTCTTCAGCTAATCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATACTATATAACTATATAATAAATATCTTCTTCAGCTAATCTCC  600

seq1  TCTTTCCTCAGTAACCCTGATACACTGTCATGTGGGGTCCTCTGATCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTCAGTAACCCTGATACACTGTCATGTGGGGTCCTCTGATCTGG  650

seq1  CTCCTCCTCCTCCTGCAAAACTGTGCAACACCCTGCAACCATACCTGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTCCTCCTGCAAAACTGTGCAACACCCTGCAACCATACCTGGGG  700

seq1  GGAAAGGTGCAATAATTTCACTGATATTTTTCCAAACTCTACTTGCACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGTGCAATAATTTCACTGATATTTTTCCAAACTCTACTTGCACAG  750

seq1  AAGCATCCTTGCAGCCCCACAAAGCCGCCTCACCTCACCTCTTCCTGTTT  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGCATCCTTGCAGCCCCACAAAGCCGCCTCACCTCACCTCTTCGTGTTT  800

seq1  CAGTGGACCAAGCCAAACACCCATCTTGGTGGAGCCTGCAGGTTCTCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGACCAAGCCAAACACCCATCTTGGTGGAGCCTGCAGGTTCTCTCT  850

seq1  AAGCCCAGCTCTGAAGATGGTCAATGAAGG-CCCCCAAAGGAAGGCAAGG  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGCCCAGCTCTGAAGATGGTCAATGAAGGCCCCCCAAAGGAAGGCAAGG  900

seq1  TTTGGAGAGGCACACACC-GAATGGAAAAACCGGGATCCCCAGG-CAGGA  947
      |||||||||||||||||| |||||| ||||| |||||||||||| |||||
seq2  TTTGGAGAGGCACACACCGGAATGGGAAAACTGGGATCCCCAGGCCAGGA  950

seq1  GCCTTTGTCCCCTGGCAACAATCACTGCGACGCAGTCTATTCAATTCCCT  997
      | ||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  GGCTTTGTCCCCTGGCAAC-ATCACTGCGACGCAGTCTATTCAA-TCCCT  998

seq1  TCC-ACACCATGGTAGTATGTGCAGCAGCTTTTGCAGAGACCACATTAGA  1046
      ||| |||| || |||||||||||||||||||||||||||| |||| ||||
seq2  TCCAACACAAT-GTAGTATGTGCAGCAGCTTTTGCAGAGA-CACA-TAGA  1045

seq1  GAAGGCAGAGTCACAGGGAGGAGGGGACCTCAGTGTCTCCCTTTCTTGAA  1096
      ||  |||||||  || |||||| |||| |||||||||||   ||| ||| 
seq2  GA--GCAGAGT--CAAGGAGGA-GGGAACTCAGTGTCTC---TTCCTGA-  1086

seq1  CACACACAAGACCTTCTCTTTGA  1119
       ||||||||||||||||| ||||
seq2  -ACACACAAGACCTTCTCGTTGA  1108