BAC Information

Click to search

BAC

Clone NameB6Ng01-241O13
Chromosome7 (Build37)
Map Location 34,952,644 - 34,953,773
singlet/doubletsinglet
Overlap geneSae2
Upstream geneLOC100043856, LOC100043857, EG545947, EG434676, EG668431, Abpd, EG545948, LOC435963, LOC435962, EG626970, LOC100043859, LOC627004, LOC100043398, LOC100043401, Scgb2b1, LOC668440, Abpz, LOC100043860, LOC627079, LOC635803, Abpg, LOC100043864, LOC100043865, Abpb, Abpa, LOC100043866, LOC100043867, LOC100043868, Wtip
Downstream geneLOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734, Lsm14a, LOC668460, LOC668464, Kctd15, Chst8, Pepd, Cebpg, Cebpa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241O13.bB6Ng01-241O13.g
ACCGA051703GA051704
length1,1141,178
definitionB6Ng01-241O13.b B6Ng01-241O13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaaccgaggtctttagaaggtgaccctaggcatctcaggctgag
agctggtttgtgttcctctggaattgtgtgagaagtaatcccaggactca
gggtgtcgcctgagcccatcccggggcgggatggcggccgcactgcgcag
gagcggaagctgcgctgcccttcccccaccgacttccggctgccgctctg
gttctcccgcctccgactgtgaggcggctcgtagacgtcccgccatggca
ctgtcgcgggggttgccccgggagctggccgaggcggtgtccggcggccg
ggtgctggtggttggcgcgggtgggatcggctgtgagctgctcaagaacc
tggtgctcactggcttctcccacatcgacctggtgaggcccgggctccgg
gtgaatggcggtctgcctgcggggcccggttccgggcgggagtcagggcg
gcgcggcccgagaggcctggggttaggatcaccgtgcgggaagcgggttg
gtgggacgcgggactccggctctccggacctcctgttcgcggccctcggc
tccctgggcctgcgcgcgccgcctcccgaggcagtttccccagttacact
gggatgcaagaagagaccctgtagatgctgtgactttaattcaaatattc
tccaacttaaaataacgatcccgcggccgagcggtttgcagccaccagcc
acagcacgccgggcgtgcacacgtgcattcattcccgagtctgccaccgg
ccctcagttgcaagtgctgtctgcatcccgttttatttttaacagatgag
gaaagtgagacgctatgaggttgagtaacttaccctgggggcacgccgta
agtggctggttagactccttggggctcgcgctctctggtctgggcatcgt
gcagatccgtgtttatgtcattatagatactccctggggtttgcaggatt
ggggtgacagactgtaatccgtgcatcgagagactgtagaactggaagtt
tgaggtccgctggctacgtagcacatcttaaccagaaattaaaaaaaatt
tttttttcgttgtcaggattcttaggtttgcgtagcgtattgccatgaca
gaacctgtaatttg
gaattctatgtttgccctggacagggtcagagcagaaggcttcgacagga
gtgtggagggacatcaagttttttctgtgttaaatggggatgtgaaacaa
caggagatgcctactggaatccttcctctgcctgagacctaatcacggta
aaacggggtagtgaccatgatgggtcaaaccaaggagaaagggacccctc
taagtatccggagaatgggtgtgctcttaaaaacagcccctcaggactat
gcaaaggtaaatactgcaacccactacttataaaattcaccgagaaaggg
agacaagatcgccagaattggcttaaaggaaataggtggggttggcgagt
atacgctccatcaagagaccctgggttcatttttactattagattaaaaa
tagagagtccacccacatgagccataggccctaattcagtgcttgatagc
gccctgtttttactcccacgcgaggactccctggtcctacaccatcttta
ggaaaagcttccttccccagctctacttcctccccttcccccatgagaac
ggaggatcgcctattcaatctacttgatggtgccttcaccattataaacc
gtacaaaccctaccgctacccagtcttgctggttgtgttttgctgccaat
cccccttattatgaaggaatagctcaggtgcggagttataacgtcacttc
tgaccattcacattgtccttgggggagtcaacggaaactgactctttcag
cagtatcgggcactggactatgcataggcagggtgcctactggacaccag
cccctctgcaacaaaaccattaacaccctgccagatgtctcagatcagta
cctagtgccccctctggatacgtggtgggcctgtggaacccggcctgact
ccctgccttcacacttcaatttttaatattactgaagacttttgcattct
ggtccaactggtgccccgagtcatcctcccatgatgatagctcctttata
gatggagtttgaccaccatactcggtatagaagagactatacctggaccc
ttagctgtctgtggactagggagttagcagcaaggtaatgtacagagcag
ctgcccttatcagcagccctattacatataatggagctaagagtacagcc
tatattgagaatgacagacacccgtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_34952644_34953773
seq2: B6Ng01-241O13.b_47_1160 (reverse)

seq1  CAAATTACAGGGGTTTCCTGTCATTGCACATTACGCTAACGCAAAACTTA  50
      |||||||||||    | ||||||| |  || |||||| |||| |||| ||
seq2  CAAATTACAGG----TTCTGTCATGG--CAATACGCT-ACGC-AAACCTA  42

seq1  AGAATCCTGACAACCAAAAAAAAAAATTTTTTTTTAATTTCTTGGGTAAG  100
      |||||||||||||| |||||||||   |||||||||||||| ||| ||||
seq2  AGAATCCTGACAACGAAAAAAAAA---TTTTTTTTAATTTC-TGGTTAAG  88

seq1  ATGTTGCTACGTAGCCCAAGCGGACCTCAAACTTCCAGTTCTACAGTCTC  150
      ||| ||||||||||||  ||||||||||||||||||||||||||||||||
seq2  ATG-TGCTACGTAGCC--AGCGGACCTCAAACTTCCAGTTCTACAGTCTC  135

seq1  TCGATGCACGGATTACAGTCTGTCA-CCCAATCCTGCAAACCCCAGGGAG  199
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCGATGCACGGATTACAGTCTGTCACCCCAATCCTGCAAACCCCAGGGAG  185

seq1  TATCTATAATGACATAAACACGGATCTGCACGATGCCCAGACCAGAGGAG  249
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TATCTATAATGACATAAACACGGATCTGCACGATGCCCAGACCAGA-GAG  234

seq1  CGCGAGCCCCAAGGAGTCTAACCAGCCACTTACGGCGTGCCCCCAGGGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGAGCCCCAAGGAGTCTAACCAGCCACTTACGGCGTGCCCCCAGGGTA  284

seq1  AGTTACTCAACCTCATAGCGTCTCACTTTCCTCATCTGTTAAAAATAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTCAACCTCATAGCGTCTCACTTTCCTCATCTGTTAAAAATAAAA  334

seq1  CGGGATGCAGACAGCACTTGCAACCTGAGGGCCGGTGGCAGACTCGGGAA  399
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CGGGATGCAGACAGCACTTGCAA-CTGAGGGCCGGTGGCAGACTCGGGAA  383

seq1  TGAATGCACGTGTGCACGCCCGGCGTGCTGTGGCTGGTGGCTGCAAACCG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCACGTGTGCACGCCCGGCGTGCTGTGGCTGGTGGCTGCAAACCG  433

seq1  CTCGGCCGCGGGATCGTTATTTTAAGTTGGAGAATATTTGAATTAAAGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGCCGCGGGATCGTTATTTTAAGTTGGAGAATATTTGAATTAAAGTC  483

seq1  ACAGCATCTACAGGGTCTCTTCTTGCATCCCAGTGTAACTGGGGAAACTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATCTACAGGGTCTCTTCTTGCATCCCAGTGTAACTGGGGAAACTG  533

seq1  CCTCGGGAGGCGGCGCGCGCAGGCCCAGGGAGCCGAGGGCCGCGAACAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGGAGGCGGCGCGCGCAGGCCCAGGGAGCCGAGGGCCGCGAACAGG  583

seq1  AGGTCCGGAGAGCCGGAGTCCCGCGTCCCACCAACCCGCTTCCCGCACGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCGGAGAGCCGGAGTCCCGCGTCCCACCAACCCGCTTCCCGCACGG  633

seq1  TGATCCTAACCCCAGGCCTCTCGGGCCGCGCCGCCCTGACTCCCGCCCGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTAACCCCAGGCCTCTCGGGCCGCGCCGCCCTGACTCCCGCCCGG  683

seq1  AACCGGGCCCCGCAGGCAGACCGCCATTCACCCGGAGCCCGGGCCTCACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGGGCCCCGCAGGCAGACCGCCATTCACCCGGAGCCCGGGCCTCACC  733

seq1  AGGTCGATGTGGGAGAAGCCAGTGAGCACCAGGTTCTTGAGCAGCTCACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCGATGTGGGAGAAGCCAGTGAGCACCAGGTTCTTGAGCAGCTCACA  783

seq1  GCCGATCCCACCCGCGCCAACCACCAGCACCCGGCCGCCGGACACCGCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGATCCCACCCGCGCCAACCACCAGCACCCGGCCGCCGGACACCGCCT  833

seq1  CGGCCAGCTCCCGGGGCAACCCCCGCGACAGTGCCATGGCGGGACGTCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCAGCTCCCGGGGCAACCCCCGCGACAGTGCCATGGCGGGACGTCTA  883

seq1  CGAGCCGCCTCACAGTCGGAGGCGGGAGAACCAGAGCGGCAGCCGGAAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCCGCCTCACAGTCGGAGGCGGGAGAACCAGAGCGGCAGCCGGAAGT  933

seq1  CGGTGGGGGAAGGGCAGCGCAGCTTCCGCTCCTGCGCAGTGCGGCCGCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGGGGAAGGGCAGCGCAGCTTCCGCTCCTGCGCAGTGCGGCCGCCA  983

seq1  TCCCGCCCCGGGATGGGCTCAGGCGACACCCTGAGTCCTGGGATTACTTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCCCCGGGATGGGCTCAGGCGACACCCTGAGTCCTGGGATTACTTC  1033

seq1  TCACACAATTCCAGAGGAACACAAACCAGCTCTCAGCCTGAGATGCCTAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAATTCCAGAGGAACACAAACCAGCTCTCAGCCTGAGATGCCTAG  1083

seq1  GGTCACCTTCTAAAGACCTCGGTTTGAATTC  1130
      |||||||||||||||||||||||||||||||
seq2  GGTCACCTTCTAAAGACCTCGGTTTGAATTC  1114