BAC Information

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BAC

Clone NameB6Ng01-242I11
Chromosome7 (Build37)
Map Location 34,871,560 - 34,872,499
singlet/doubletsinglet
Overlap geneAbpb
Upstream geneLOC270234, EG668419, EG668422, EG546954, LOC100043856, LOC100043857, EG545947, EG434676, EG668431, Abpd, EG545948, LOC435963, LOC435962, EG626970, LOC100043859, LOC627004, LOC100043398, LOC100043401, Scgb2b1, LOC668440, Abpz, LOC100043860, LOC627079, LOC635803, Abpg, LOC100043864, LOC100043865, Abpa, LOC100043866, LOC100043867
Downstream geneLOC100043868, Wtip, Sae2, LOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734, Lsm14a, LOC668460, LOC668464, Kctd15, Chst8, Pepd, Cebpg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242I11.bB6Ng01-242I11.g
ACCGA052148GA052149
length1,188953
definitionB6Ng01-242I11.b B6Ng01-242I11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagggacttgaagtttttatcata
cagatctttcacttccttcgttagagtcacgccgagatattttatattat
tgtggctattgagaagggtgttggtttccctaaatttctttctcagctgt
ttattctttgtagtagaagaaaggccattgacttgttgagttaattttat
atccagctactcaccgaagctggtttaacagtttaaggactccttcgtgg
aagttttagggtcacttatatataccattcaatcatctgcaaatgtgaaa
ttgacgtcactctttcaattgtgaatccccgatggatc
gaattcatgaactggagtgaatccctcattctaccactcactgctctcac
cacatggactgtactgttcaaacctctttgagacatggttactgacagaa
ttgagagaggagaagctgtgcaggacaacaggaatgagctaccatggagt
gaagcagaatttgtagtacaaaaccttcatcagcccccgaggatacccac
acagccaaagagctggggactaccctgttcactgagaggtagatggtgat
tccatgttctcagccttccaatacaaaggcctcagctgcatgaacaattg
gagcaaggagtggtgaggagtgtgaccaggaagcagaggtgtcaagtgga
acagaaccacagggcatttggctcagcactcctgctgcttacaaaggtca
gctctaactctttggcacaagtacagacagcgtatctccagaaactgata
atatcaggccatctcaggctgtttgttattcagagtgggaggggctccca
tactacgtcccctatgcaatttggatgggtattcacaggtgctaggttct
tgcacaaaatgtatttggagctcctgtatctttggttgggggtgggtgtg
gctaggttcaaggctataatggtttatatggaagagaatctgctctgaag
agagcatttagcactctccaccatgaaggggacactttttctgctggcct
tgctggtgactggagagctgggcttccagacaagtgagagtgcgaccctc
cctcatcccatatcagtcccatgtagatctctaagtggggcatgagacag
acctagggggtcccctgggagtccactagccagggagctgcacaagacag
tttgatgcttttctgctctggggttacaaacagttgaagtgggtggggaa
cagggaagacagaggtgtgctggttgatgatatccatgaatgaaagggac
ctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_34871560_34872499
seq2: B6Ng01-242I11.g_67_1019 (reverse)

seq1  AAGGTCCC-TTCA-TCATGGATATCATC-ACCAGCACACCTCTGTC-TCC  46
      |||||||| |||| |||||||||||||| ||||||||||||||||| |||
seq2  AAGGTCCCTTTCATTCATGGATATCATCAACCAGCACACCTCTGTCTTCC  50

seq1  CTGT--CCCACCCACTTCAACTG-TTGTAA-CCCAGAGCAG-AAAGCATC  91
      ||||  ||||||||||||||||| |||||| |||||||||| ||||||||
seq2  CTGTTCCCCACCCACTTCAACTGTTTGTAACCCCAGAGCAGAAAAGCATC  100

seq1  -AACTGTCTTGTGCAGCT-CCTTGCTAGTGGACTCCCAGGG--ACCCCTA  137
       ||||||||||||||||| ||| ||||||||||||||||||   ||||||
seq2  AAACTGTCTTGTGCAGCTCCCTGGCTAGTGGACTCCCAGGGGACCCCCTA  150

seq1  GGTCTGTCTCATGCCCCACTTAGAGATCTACATGGGACTGATATGGGATG  187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTCTCATGCCCCACTTAGAGATCTACATGGGACTGATATGGGATG  200

seq1  AGGGAGGGTCGCACTCTCACTTGTCTGGAAGCCCAGCTCTCCAGTCACCA  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGTCGCACTCTCACTTGTCTGGAAGCCCAGCTCTCCAGTCACCA  250

seq1  GCAAGGCCAGCAGAAAAAGTGTCCCCTTCATGGTGGAGAGTGCTAAATGC  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCCAGCAGAAAAAGTGTCCCCTTCATGGTGGAGAGTGCTAAATGC  300

seq1  TCTCTTCAGAGCAGATTCTCTTCCATATAAACCATTATAGCCTTGAACCT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCAGAGCAGATTCTCTTCCATATAAACCATTATAGCCTTGAACCT  350

seq1  AGCCACACCCACCCCCAACCAAAGATACAGGAGCTCCAAATACATTTTGT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACACCCACCCCCAACCAAAGATACAGGAGCTCCAAATACATTTTGT  400

seq1  GCAAGAACCTAGCACCTGTGAATACCCATCCAAATTGCATAGGGGACGTA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAACCTAGCACCTGTGAATACCCATCCAAATTGCATAGGGGACGTA  450

seq1  GTATGGGAGCCCCTCCCACTCTGAATAACAAACAGCCTGAGATGGCCTGA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGGAGCCCCTCCCACTCTGAATAACAAACAGCCTGAGATGGCCTGA  500

seq1  TATTATCAGTTTCTGGAGATACGCTGTCTGTACTTGTGCCAAAGAGTTAG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCAGTTTCTGGAGATACGCTGTCTGTACTTGTGCCAAAGAGTTAG  550

seq1  AGCTGACCTTTGTAAGCAGCAGGAGTGCTGAGCCAAATGCCCTGTGGTTC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACCTTTGTAAGCAGCAGGAGTGCTGAGCCAAATGCCCTGTGGTTC  600

seq1  TGTTCCACTTGACACCTCTGCTTCCTGGTCACACTCCTCACCACTCCTTG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCACTTGACACCTCTGCTTCCTGGTCACACTCCTCACCACTCCTTG  650

seq1  CTCCAATTGTTCATGCAGCTGAGGCCTTTGTATTGGAAGGCTGAGAACAT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATTGTTCATGCAGCTGAGGCCTTTGTATTGGAAGGCTGAGAACAT  700

seq1  GGAATCACCATCTACCTCTCAGTGAACAGGGTAGTCCCCAGCTCTTTGGC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCACCATCTACCTCTCAGTGAACAGGGTAGTCCCCAGCTCTTTGGC  750

seq1  TGTGTGGGTATCCTCGGGGGCTGATGAAGGTTTTGTACTACAAATTCTGC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGGTATCCTCGGGGGCTGATGAAGGTTTTGTACTACAAATTCTGC  800

seq1  TTCACTCCATGGTAGCTCATTCCTGTTGTCCTGCACAGCTTCTCCTCTCT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCCATGGTAGCTCATTCCTGTTGTCCTGCACAGCTTCTCCTCTCT  850

seq1  CAATTCTGTCAGTAACCATGTCTCAAAGAGGTTTGAACAGTACAGTCCAT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTGTCAGTAACCATGTCTCAAAGAGGTTTGAACAGTACAGTCCAT  900

seq1  GTGGTGAGAGCAGTGAGTGGTAGAATGAGGGATTCACTCCAGTTCATGAA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGAGAGCAGTGAGTGGTAGAATGAGGGATTCACTCCAGTTCATGAA  950

seq1  TTC  940
      |||
seq2  TTC  953