BAC Information

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BAC

Clone NameB6Ng01-242L19
Chromosome7 (Build37)
Map Location 13,381,634 - 13,382,797
singlet/doubletsinglet
Overlap geneLOC100042515
Upstream geneEG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128
Downstream geneZfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242L19.bB6Ng01-242L19.g
ACCGA052303GA052304
length4941,183
definitionB6Ng01-242L19.b B6Ng01-242L19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tcacctgaggaataccgaatggcagagaagcacttgaaaaaatgttcaac
atccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacc
tcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatgc
tggcgaggatgtggagaaagaggaacactccaccattgttggtgggagtg
caggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaac
tggacatagtactaccggaggatccagcaatacctctcctgggcatatat
ccagaagatgccccaacaggtaagaaggacacatgctccactatgttcat
agcagccttatttattttttttttccattttttattaggtatttaactca
tttacatttccaatgctataccaaaagtcccccatatccacccaccccca
ctcccctgcccacccactccccctttttggccctggtattcccc
gaattcctgtgggagacgagtccttcaagtcgtggtaaatgtgggaaagc
cttcagagttcattaagtacagggatccttcagtgttctctgtgctttca
tgaagcatgaaaggacccatatgggggatgctgactgtgatgtgtccatt
ctgggaagtccaccagcctccgttctttctttgtttttcaccataggact
catactggagaagagctgtgcagatgtaatgtgtatgaaaagcattcccc
tggagtctcctgccttattatgcatctgagaattcacataggacaaaatg
tgtggagtgtggaatggctttcattggtggctcataccttattaagtata
gaattcacattggagagagactgggaagtgggtagagttggaaaaatcct
tcaatggcagtggtcacctcattgcatgttaaggaaaacaaacaaacaaa
aaaaccaaaagcaaccaaaatccttaacagaaagaagtccctcatgtaca
aagagtgcctctgccaggcatcagaggattcatactgcctctgctggaag
cctggtggagttttaactactgtggcaaagccttcaggaagagcccctcc
ctgaccaagcagcaggagtcactatgcatgaggtcttttgctaggtgttt
ccaacaggagaaattttcagtgcaccattttcccaggttaaatacagaga
cgtcacactgtagcaatttctgggagactcagtgaacaggagtggcagtg
actatcagcatctctttagttactgttaaaatttatactcaagtgtagtt
tgaaaacatagcaactcaccatctagtccatggaatataacccatgagac
attatatctctaataaactggaattaatttgcctcctgtacaacagactg
aaatgaaccttagaaaacataatggaattaaaaccatcttgagtttactt
cttcactaaattctaagaccaagaaaaattgaatgctgtgtgacaggatc
ggaagaagtaggaagctcttttattctttacttcgtttcttttcttatat
tccagaatgttttaagggatgtgccttgtagttcaagtggcaaagagagg
tctttccatagcattttgtgagtccttccactttcaaccttaagaaccat
tgataaatcctatgaaccattggaattggagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_13381634_13382797
seq2: B6Ng01-242L19.g_67_1249 (reverse)

seq1  GGCTCCAATTCAAATGGTCTCCTATGTTTTTATTCAGTGGTGCTTAGGGT  50
      ||||||||||| |||||| || || | |||   ||| |||| |||| |||
seq2  GGCTCCAATTCCAATGGT-TCATAGGATTT--ATCAATGGTTCTTAAGGT  47

seq1  TG-AAGT-GAGGGCTTCAC-AAGTGCTA-GGAAAG--CCCTCCTTGCCAC  94
      || |||| || ||  |||| || ||||| ||||||  | ||| |||||||
seq2  TGAAAGTGGAAGGACTCACAAAATGCTATGGAAAGACCTCTCTTTGCCAC  97

seq1  -TGAACTACAA-GCACAT-CCTTAAAACA-TCTGG-ATATAAG-AAAGAA  138
       |||||||||| |||||| |||||||||| ||||| ||||||| ||||||
seq2  TTGAACTACAAGGCACATCCCTTAAAACATTCTGGAATATAAGAAAAGAA  147

seq1  ACGTAGT-AAGAATAAA--GGCTTCCT-CTTCTCTCGATCCTGTCAC-CA  183
      ||| ||| |||||||||   ||||||| |||||  |||||||||||| ||
seq2  ACGAAGTAAAGAATAAAAGAGCTTCCTACTTCTTCCGATCCTGTCACACA  197

seq1  GCATTCAAATTTTTCCTGGTCTTAG-ATTTAGTGAAG-AGTAAACTC-AG  230
      |||||| |||||||| ||||||||| ||||||||||| ||||||||| ||
seq2  GCATTC-AATTTTTCTTGGTCTTAGAATTTAGTGAAGAAGTAAACTCAAG  246

seq1  ATGGTTTTAATT-CATTATG-TTTCTAAGGTTCATTTTCAGTCTGTTGTA  278
      |||||||||||| ||||||| ||||||||||||| |||||||||||||||
seq2  ATGGTTTTAATTCCATTATGTTTTCTAAGGTTCA-TTTCAGTCTGTTGTA  295

seq1  CAGGA-GCAAAATAATTCCAGTTTATTAGAGATATAATGTCTCATGGGTT  327
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGCAAATTAATTCCAGTTTATTAGAGATATAATGTCTCATGGGTT  345

seq1  ATATTCCATGGACTAGATGGTGAGTTGCTATGTTTTCAAACTACACTTGA  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCATGGACTAGATGGTGAGTTGCTATGTTTTCAAACTACACTTGA  395

seq1  GTATAAATTTTAACAGTAACTAAAGAGATGCTGATAGTCACTGCCACTCC  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAATTTTAACAGTAACTAAAGAGATGCTGATAGTCACTGCCACTCC  445

seq1  TGTTCACTGAGTCTCCCAGAAATTGCTACAGTGTGACGTCTCTGTATTTA  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACTGAGTCTCCCAGAAATTGCTACAGTGTGACGTCTCTGTATTTA  495

seq1  ACCTGGGAAAATGGTGCACTGAAAATTTCTCCTGTTGG-AACACCTAGCA  526
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACCTGGGAAAATGGTGCACTGAAAATTTCTCCTGTTGGAAACACCTAGCA  545

seq1  AAAGACCTCATGCATAGTGACTCCTGCTGCTTGGTCAGGGAGGGGCTCTT  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCTCATGCATAGTGACTCCTGCTGCTTGGTCAGGGAGGGGCTCTT  595

seq1  CCTGAAGGCTTTGCCACAGTAGTTAAAACTCCACCAGGCTTCCAGCAGAG  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGGCTTTGCCACAGTAGTTAAAACTCCACCAGGCTTCCAGCAGAG  645

seq1  GCAGTATGAATCCTCTGATGCCTGGCAGAGGCACTCTTTGTACATGAGGG  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATGAATCCTCTGATGCCTGGCAGAGGCACTCTTTGTACATGAGGG  695

seq1  ACTTCTTTCTGTTAAGGATTTTGGTTGCTTTTGGTTTTTTTGTTTGTTTG  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTTCTGTTAAGGATTTTGGTTGCTTTTGGTTTTTTTGTTTGTTTG  745

seq1  TTTTCCTTAACATGCAATGAGGTGACCACTGCCATTGAAGGATTTTTCCA  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTAACATGCAATGAGGTGACCACTGCCATTGAAGGATTTTTCCA  795

seq1  ACTCTACCCACTTCCCAGTCTCTCTCCAATGTGAATTCTATACTTAATAA  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACCCACTTCCCAGTCTCTCTCCAATGTGAATTCTATACTTAATAA  845

seq1  GGTATGAGCCACCAATGAAAGCCATTCCACACTCCACACATTTTGTCCTA  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGAGCCACCAATGAAAGCCATTCCACACTCCACACATTTTGTCCTA  895

seq1  TGTGAATTCTCAGATGCATAATAAGGCAGGAGACTCCAGGGGAATGCTTT  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTCTCAGATGCATAATAAGGCAGGAGACTCCAGGGGAATGCTTT  945

seq1  TCATACACATTACATCTGCACAGCTCTTCTCCAGTATGAGTCCTATGGTG  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACACATTACATCTGCACAGCTCTTCTCCAGTATGAGTCCTATGGTG  995

seq1  AAAAACAAAGAAAGAACGGAGGCTGGTGGACTTCCCAGAATGGACACATC  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAGAAAGAACGGAGGCTGGTGGACTTCCCAGAATGGACACATC  1045

seq1  ACAGTCAGCATCCCCCATATGGGTCCTTTCATGCTTCATGAAAGCACAGA  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAGCATCCCCCATATGGGTCCTTTCATGCTTCATGAAAGCACAGA  1095

seq1  GAACACTGAAGGATCCCTGTACTTAATGAACTCTGAAGGCTTTCCCACAT  1126
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTGAAGGATCCCTGTACTTAATGAACTCTGAAGGCTTTCCCACAT  1145

seq1  TTACCACGACTTGAAGGACTCGTCTCCCACAGGAATTC  1164
      ||||||||||||||||||||||||||||||||||||||
seq2  TTACCACGACTTGAAGGACTCGTCTCCCACAGGAATTC  1183