BAC Information

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BAC

Clone NameB6Ng01-242M22
Chromosome7 (Build37)
Map Location 151,343,506 - 151,446,388
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnq1, Cdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498
Downstream geneShank2, Cttn, Ppfia1, Fadd, Tmem16a, LOC669079, LOC677315, Fgf3, Fgf4, Fgf15, Oraov1, Ccnd1, 1810010D01Rik, LOC100040049, Tpcn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242M22.bB6Ng01-242M22.g
ACCGA052353GA052354
length1,1831,126
definitionB6Ng01-242M22.b B6Ng01-242M22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,343,506 - 151,344,661)(151,445,249 - 151,446,388)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttcttaagaacacaaactttctagcagc
agagaaagtgactgtagcttgtagagagactcaggtgggacagtgtgtag
agaagactcatcggaaggggcaccagcttaaggctagagaaccttaaagt
aaatatgtaggcagaagcagaggtcaagggtaaagtatatataactggca
acaggagacgccatgtggagaaggtaggagaacagagaagggaagagcta
aggttttcatgtcttctgtgacctagatgaaactgaggcccttggccact
tattcagaacaccagcctttctgacctggaagcttatagaagcaaagcaa
actcctccattctgggccagttctttccacgaggaaccagattgagtttg
ggagggacataccgcagtgtgcgttctttttaattagcccttgtggtaaa
gtcgtgaggagctatggagcctgccagagccttcggggcacctgttggtg
gccggccagttggctgtcctctcatatcactgggtcaccaggaattctat
ggagccagggctcagatctcctcgttcaaatgacaagctatgcctgcttc
tgaaggctgtgggttgaatagccttctctatggtagatgcagggtttgtc
caggcaaggaggtcacggccagggccctaatgtcctggcagcactgtatg
ctccaggtctgacattgcgaaaggcccaggctaggtcctcaagagtacac
caactccttcctggggaatactgaatctcttttaagaaccctgtgtgtgt
gtgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtgtgctgggcaagagac
ttgagtcactgtttgctgtggcttgctggactgttctcccagagttccta
ttgccactcattagccaaccaggtgcaaaagggccttgcattttagcttc
atgtttcagactctgaggctctggtttcgagtttcgagcttgtgcaacta
ccatttcaaggctggttaatcatttcatggatgggggttggcatttgcat
tgttatctctgtaacggagcccccccaaggtaggtttcagaacctacttg
cctcttctcggcaattctagattctagttagtt
gaattcctggttctacctgccttgcagatccctgccacggtcaaagctgt
ctcccttactaatccctacatctgtatgagcagtcttttgtcagtcacag
aaacagtgttttctgtcccaatggtgctctgggcagcaagaatttgatat
tcaccaagacttctcctcacacacctaaccccaggtgattgtgaacagaa
acatgttgacctcaggtggtcccaggcacggcctcacacgcaggtgtaaa
tacatggaggctgaggactcataccctaccccccttggcctcttctccag
tctccatgtttttctatcacactgacagtgaccttgctttactaggttgc
tgaggctgtgtccagggcatggtagtggtgctggtgagatggacagatag
acatgtgacccttgtttgctccaactgaaatggcaggtcaagagaggccc
acagcttgtccaactcttcatcatgggagagctatggctgactcctaact
attcatctaaactcttctacactctgctcagaagttgctggttggcccca
gtttggccctaatccccagatatgcttcatcaaaggcacagtctgagagt
gaccactgcttgaagccttctaccttaggttctccccacccccaccccac
aaggcccactgttccctacctgaacagctcttcaagtagccacagtaaca
gcttttcccagacctcccaggaacttatggcgtactggctctgcctggat
cttccttgttagatggacatatgggttaaggctactactgactctggcca
cctgttaatggtccattctggccaggtttcccagtagccactcgagcaag
gcttctgtgggaagattctatcctggatcctgtgacagccataccacagg
aaacacacaactttctacaaacttcccacccatgagcctagaaggtctgc
tttccctgggggccctgctcatcaggagagcaagattccctgaacagaat
gcggactcgggggtgaagtgtaagccagagcagcagtctaatactgcctg
gaggaggcaatcactctgcttaggttcctgtcatgccgtctcacatccgt
atgattctcaaggaatgccatctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_151343506_151344661
seq2: B6Ng01-242M22.b_47_1229

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGAAGTCCACCTTCTTGAGTTCTTAAGAACACAAACTTTCTAGCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTCCACCTTCTTGAGTTCTTAAGAACACAAACTTTCTAGCAGC  100

seq1  AGAGAAAGTGACTGTAGCTTGTAGAGAGACTCAGGTGGGACAGTGTGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGTGACTGTAGCTTGTAGAGAGACTCAGGTGGGACAGTGTGTAG  150

seq1  AGAAGACTCATCGGAAGGGGCACCAGCTTAAGGCTAGAGAACCTTAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACTCATCGGAAGGGGCACCAGCTTAAGGCTAGAGAACCTTAAAGT  200

seq1  AAATATGTAGGCAGAAGCAGAGGTCAAGGGTAAAGTATATATAACTGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTAGGCAGAAGCAGAGGTCAAGGGTAAAGTATATATAACTGGCA  250

seq1  ACAGGAGACGCCATGTGGAGAAGGTAGGAGAACAGAGAAGGGAAGAGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGACGCCATGTGGAGAAGGTAGGAGAACAGAGAAGGGAAGAGCTA  300

seq1  AGGTTTTCATGTCTTCTGTGACCTAGATGAAACTGAGGCCCTTGGCCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTCATGTCTTCTGTGACCTAGATGAAACTGAGGCCCTTGGCCACT  350

seq1  TATTCAGAACACCAGCCTTTCTGACCTGGAAGCTTATAGAAGCAAAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGAACACCAGCCTTTCTGACCTGGAAGCTTATAGAAGCAAAGCAA  400

seq1  ACTCCTCCATTCTGGGCCAGTTCTTTCCACGAGGAACCAGATTGAGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCCATTCTGGGCCAGTTCTTTCCACGAGGAACCAGATTGAGTTTG  450

seq1  GGAGGGACATACCGCAGTGTGCGTTCTTTTTAATTAGCCCTTGTGGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGACATACCGCAGTGTGCGTTCTTTTTAATTAGCCCTTGTGGTAAA  500

seq1  GTCGTGAGGAGCTATGGAGCCTGCCAGAGCCTTCGGGGCACCTGTTGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGAGGAGCTATGGAGCCTGCCAGAGCCTTCGGGGCACCTGTTGGTG  550

seq1  GCCGGCCAGTTGGCTGTCCTCTCATATCACTGGGTCACCAGGAATTCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGCCAGTTGGCTGTCCTCTCATATCACTGGGTCACCAGGAATTCTAT  600

seq1  GGAGCCAGGGCTCAGATCTCCTCGTTCAAATGACAAGCTATGCCTGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAGGGCTCAGATCTCCTCGTTCAAATGACAAGCTATGCCTGCTTC  650

seq1  TGAAGGCTGTGGGTTGAATAGCCTTCTCTATGGTAGATGCAGGGTTTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCTGTGGGTTGAATAGCCTTCTCTATGGTAGATGCAGGGTTTGTC  700

seq1  CAGGCAAGGAGGTCACGGCCAGGGCCCTAATGTCCTGGCAGCACTGTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAGGAGGTCACGGCCAGGGCCCTAATGTCCTGGCAGCACTGTATG  750

seq1  CTCCAGGTCTGACATTGCG-AAGGCCCAGGCTAGGTCCTCAAGAGTACAC  799
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTCCAGGTCTGACATTGCGAAAGGCCCAGGCTAGGTCCTCAAGAGTACAC  800

seq1  CAACTCCTTCCTGGGGAATACTGAATCTCTTTTAAGAACCCTGTGTGTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCTTCCTGGGGAATACTGAATCTCTTTTAAGAACCCTGTGTGTGT  850

seq1  GTGTGTCTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGCTGGGC-AGAGAC  898
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTGTGTCTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGCTGGGCAAGAGAC  900

seq1  TTGAGTCACTG-TTGCTGTGGCTTGCTGGACTGTTCTCCCAGAG-TCCTA  946
      ||||||||||| |||||||||||||||||||||||||||||||| |||||
seq2  TTGAGTCACTGTTTGCTGTGGCTTGCTGGACTGTTCTCCCAGAGTTCCTA  950

seq1  -TGCCACTCAATAGCCAACCAGGTGCAAAAGG--CCTGCA-TTTAGC-TC  991
       ||||||||| |||||||||||||||||||||  | |||| |||||| ||
seq2  TTGCCACTCATTAGCCAACCAGGTGCAAAAGGGCCTTGCATTTTAGCTTC  1000

seq1  ATGTTCCAGACTCTGAGGCTCTGGTTCCGAG-TTCGAGCTTGTGCCAACT  1040
      ||||| |||||||||||||||||||| |||| |||||||||||| |||||
seq2  ATGTTTCAGACTCTGAGGCTCTGGTTTCGAGTTTCGAGCTTGTG-CAACT  1049

seq1  ACCA-TTCAAAGCTGGTAAATCA-TTCAT-GATTGGGGT--GCA-TTGCA  1084
      |||| ||||| |||||| ||||| ||||| ||| |||||  ||| |||||
seq2  ACCATTTCAAGGCTGGTTAATCATTTCATGGATGGGGGTTGGCATTTGCA  1099

seq1  T--GTATCTCTG--ACAGAG-CCCCCCAAGTTAGG-TTCAG-ACCTACTT  1127
      |   ||||||||  || ||| ||||||||| |||| ||||| ||||||||
seq2  TTGTTATCTCTGTAACGGAGCCCCCCCAAGGTAGGTTTCAGAACCTACTT  1149

seq1  GC----TCTCGGC-ATTCTAGGTTCTAGTAAGTT  1156
      ||    ||||||| ||||||| ||||||| ||||
seq2  GCCTCTTCTCGGCAATTCTAGATTCTAGTTAGTT  1183

seq1: chr7_151445249_151446388
seq2: B6Ng01-242M22.g_64_1189 (reverse)

seq1  GAAAGATGGCA-TCCTTGAGAGAAAACAATAGGGATGTGAGAAGGGGCAT  49
      ||||||||||| ||||||||    ||  ||| ||||||||||   |||||
seq2  GAAAGATGGCATTCCTTGAG----AATCATACGGATGTGAGA--CGGCAT  44

seq1  GAACAGGGACCCTAAAGCAGAGTGATTGGCTTCCTCCAGCAGGTATTTAG  99
      | ||||| |||   ||||||||||||| || ||||||||   ||| ||||
seq2  G-ACAGGAACC--TAAGCAGAGTGATT-GCCTCCTCCAGGCAGTA-TTAG  89

seq1  GCCTTCCTGGCTCTGGGCTTACACTTCA-CCCCGAGTCCCGCATTCTTGT  148
       |  | || ||||| ||||||||||||| |||||||| |||||||| |||
seq2  AC--TGCT-GCTCT-GGCTTACACTTCACCCCCGAGT-CCGCATTC-TGT  133

seq1  TCAGGGAATCTTGCTCTCCTTGATGAGCAGGG-CCCCAGGG-AAGCAGAC  196
      ||||||||||||||||||| |||||||||||| |||||||| ||||||||
seq2  TCAGGGAATCTTGCTCTCC-TGATGAGCAGGGCCCCCAGGGAAAGCAGAC  182

seq1  CTTCTAGGCTCATGGGTTGGGAGTTTGTAGAAAGTTGTGTGTTTCCTGTG  246
      ||||||||||||||||| || |||||||||||||||||||||||||||||
seq2  CTTCTAGGCTCATGGGTGGGAAGTTTGTAGAAAGTTGTGTGTTTCCTGTG  232

seq1  GTATGGCTGTCACAGGATCCAGGATAGAATCTTCCCACAGAAGCCTTGCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGCTGTCACAGGATCCAGGATAGAATCTTCCCACAGAAGCCTTGCT  282

seq1  CGAGTGGCTACTGGGAAACCTGGCCAGAATGGACCATTAACAGGTGGCCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGGCTACTGGGAAACCTGGCCAGAATGGACCATTAACAGGTGGCCA  332

seq1  GAGTCAGTAGTAGCCTTAACCCATATGTCCATCTAACAAGGAAGATCCAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGTAGTAGCCTTAACCCATATGTCCATCTAACAAGGAAGATCCAG  382

seq1  GCAGAGCCAGTACGCCATAAGTTCCTGGGAGGTCTGGGAAAAGCTGTTAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCCAGTACGCCATAAGTTCCTGGGAGGTCTGGGAAAAGCTGTTAC  432

seq1  TGTGGCTACTTGAAGAGCTGTTCAGGTAGGGAACAGTGGGCCTTGTGGGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTACTTGAAGAGCTGTTCAGGTAGGGAACAGTGGGCCTTGTGGGG  482

seq1  TGGGGGTGGGGAGAACCTAAGGTAGAAGGCTTCAAGCAGTGGTCACTCTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTGGGGAGAACCTAAGGTAGAAGGCTTCAAGCAGTGGTCACTCTC  532

seq1  AGACTGTGCCTTTGATGAAGCATATCTGGGGATTAGGGCCAAACTGGGGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTGCCTTTGATGAAGCATATCTGGGGATTAGGGCCAAACTGGGGC  582

seq1  CAACCAGCAACTTCTGAGCAGAGTGTAGAAGAGTTTAGATGAATAGTTAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGCAACTTCTGAGCAGAGTGTAGAAGAGTTTAGATGAATAGTTAG  632

seq1  GAGTCAGCCATAGCTCTCCCATGATGAAGAGTTGGACAAGCTGTGGGCCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGCCATAGCTCTCCCATGATGAAGAGTTGGACAAGCTGTGGGCCT  682

seq1  CTCTTGACCTGCCATTTCAGTTGGAGCAAACAAGGGTCACATGTCTATCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGACCTGCCATTTCAGTTGGAGCAAACAAGGGTCACATGTCTATCT  732

seq1  GTCCATCTCACCAGCACCACTACCATGCCCTGGACACAGCCTCAGCAACC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCTCACCAGCACCACTACCATGCCCTGGACACAGCCTCAGCAACC  782

seq1  TAGTAAAGCAAGGTCACTGTCAGTGTGATAGAAAAACATGGAGACTGGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAGCAAGGTCACTGTCAGTGTGATAGAAAAACATGGAGACTGGAG  832

seq1  AAGAGGCCAAGGGGGGTAGGGTATGAGTCCTCAGCCTCCATGTATTTACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCCAAGGGGGGTAGGGTATGAGTCCTCAGCCTCCATGTATTTACA  882

seq1  CCTGCGTGTGAGGCCGTGCCTGGGACCACCTGAGGTCAACATGTTTCTGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGTGTGAGGCCGTGCCTGGGACCACCTGAGGTCAACATGTTTCTGT  932

seq1  TCACAATCACCTGGGGTTAGGTGTGTGAGGAGAAGTCTTGGTGAATATCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATCACCTGGGGTTAGGTGTGTGAGGAGAAGTCTTGGTGAATATCA  982

seq1  AATTCTTGCTGCCCAGAGCACCATTGGGACAGAAAACACTGTTTCTGTGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGCTGCCCAGAGCACCATTGGGACAGAAAACACTGTTTCTGTGA  1032

seq1  CTGACAAAAGACTGCTCATACAGATGTAGGGATTAGTAAGGGAGACAGCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAAAAGACTGCTCATACAGATGTAGGGATTAGTAAGGGAGACAGCT  1082

seq1  TTGACCGTGGCAGGGATCTGCAAGGCAGGTAGAACCAGGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCGTGGCAGGGATCTGCAAGGCAGGTAGAACCAGGAATTC  1126