BAC Information

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BAC

Clone NameB6Ng01-243P06
Chromosome7 (Build37)
Map Location 19,866,771 - 20,054,088
singlet/doubletdoublet
Overlap geneRtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4
Upstream genePsg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127
Downstream gene4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243P06.bB6Ng01-243P06.g
ACCGA053206GA053207
length1,071928
definitionB6Ng01-243P06.b B6Ng01-243P06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,866,771 - 19,867,824)(20,053,168 - 20,054,088)
sequence
gaattccatcccccaaacccacatggtagaaagagggaattctgggacct
ggtgctggccacaactgcccataagaggtgttgatgatatggcagaggca
ggatagaataggagttttgtctcacttgtttatcggtatcccgctggggc
ctacgtacctgtcttaccacacatgctctatagacgactattgaaaggat
gaatgaacggaaacttcccaaagctcctactctgaagagtaagcttgctg
ggtatgaacgtgtgactggagcagagtgacctgcttatatgctccacagg
atacacacacacacacacacacacacacacacacacacacacacacacaa
ataattgtaaaactaaatgttagggctggagagatggccctgagttcaat
tcccagaaatcacatggtggctcacaaccatatacaatgagaggatctgg
cgccctcttctggcatacaggcatatatacaggcagaacactgtacataa
taaacaaacaaacaaatctttaaagaaaataagttggggaggggtggata
gacagctcagtggttaagagcactgtctgctcttccagaggtctagagtt
caattcccagcaaccacatggtggctcacaaccatctgtactgggatctg
atgccctcttctggtgtgtctgaagacagctacagtgtactcacatacat
aaaataaataaacaaacctttttttaaaaaagaaaaaaacgagttttgtt
tatttgttttgagacagggtttctggctgtcccccgcaccccgctctgta
aaccaggctggccttgaacttcacagagattctggtctgcctctgcctcc
caaagcgccgggtaaagggtgtacaccaccatagctggcagaaaaataag
ttttaagttttagttcttttccccaccccctttttcacgccatcctcaag
tctagcctcagacttcttaccccagaacattcatatcccacccttctctc
agtggccatctctaaaaactggccccaacaccctttacatcggagtatgc
attattttcgggcactctctc
gaattctgtgctatagatttatttatttatttaatatgagtacactgtag
ctgtcttcagacactccagaagagggcatcagatcccattacagatggct
gtgaaccactatgtggttgctgggaattgaactcaggacctctggaagag
cagtcagtgctcttaaccactgagctgtctatccagcccccttcaacact
ttcataacaacttcctgttcctcagtaaggaaagcccgcttgatcttgtc
gcggacacacttggcgcacatggaaccgccacaggctctgctgacgtgct
gctctgtcttaaacaatctcataaggatttgggtctcacagcgcgaaccg
ctcccctcgcagtgtgcctggacacactccgcatgcaacttaggtgcttc
cccaaccttctttgtgtaaaggtaaacaatcctgttgccaggggttcgag
gcagcctagttttgttagacgctgtgttgtaggaaagcctaaagacagta
tgtcaaacgctggaccaccctgcgtgcctctaagcactgtccccgggaga
gccactgttagtttttaaaagccagcttgaactaaactatatgcctttct
ttctctcacacacataatctctctctctctctctctctctctctctctct
ctctctctctcatccctaaaatcccagcactcaggagacagaacaggaga
aatgacacctgttctaccatgggtctacacacaggccagcaagaccagat
gaaacccagtctcaaaacaacaaacaaacaaacaaacaacaattatgagc
gaaacaaaaatataatggcgtttggctcaatagaagagccactgggctgc
cttaaaatttcccccaggtagtggctgggggcgtggctcagtgggctggg
ggcgtggctcagttggctggaagcgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_19866771_19867824
seq2: B6Ng01-243P06.b_46_1116

seq1  GAATTCCATCCCCCAAACCCACATGGTAGAAAGAGGGAATTCTGGGACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCCCCAAACCCACATGGTAGAAAGAGGGAATTCTGGGACCT  50

seq1  GGTGCTGGCCACAACTGCCCATAAGAGGTGTTGATGATATGGCAGAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGGCCACAACTGCCCATAAGAGGTGTTGATGATATGGCAGAGGCA  100

seq1  GGATAGAATAGGAGTTTTGTCTCACTTGTTTATCGGTATCCCGCTGGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGAATAGGAGTTTTGTCTCACTTGTTTATCGGTATCCCGCTGGGGC  150

seq1  CTACGTACCTGTCTTACCACACATGCTCTATAGACGACTATTGAAAGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGTACCTGTCTTACCACACATGCTCTATAGACGACTATTGAAAGGAT  200

seq1  GAATGAACGGAAACTTCCCAAAGCTCCTACTCTGAAGAGTAAGCTTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAACGGAAACTTCCCAAAGCTCCTACTCTGAAGAGTAAGCTTGCTG  250

seq1  GGTATGAACGTGTGACTGGAGCAGAGTGACCTGCTTATATGCTCCACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGAACGTGTGACTGGAGCAGAGTGACCTGCTTATATGCTCCACAGG  300

seq1  ATACACACACACACACACACACACACACACACACACACACACACACACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACACACACACACACACACACACACACACACACACACACACAA  350

seq1  ATAATTGTAAAACTAAATGTTAGGGCTGGAGAGATGGCCCTGAGTTCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGTAAAACTAAATGTTAGGGCTGGAGAGATGGCCCTGAGTTCAAT  400

seq1  TCCCAGAAATCACATGGTGGCTCACAACCATATACAATGAGAGGATCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAAATCACATGGTGGCTCACAACCATATACAATGAGAGGATCTGG  450

seq1  CGCCCTCTTCTGGCATACAGGCATATATACAGGCAGAACACTGTACATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCTCTTCTGGCATACAGGCATATATACAGGCAGAACACTGTACATAA  500

seq1  TAAACAAACAAACAAATCTTTAAAGAAAATAAGTTGGGGAGGGGTGGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAACAAACAAATCTTTAAAGAAAATAAGTTGGGGAGGGGTGGATA  550

seq1  GACAGCTCAGTGGTTAAGAGCACTGTCTGCTCTTCCAGAGGTCTAGAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTCAGTGGTTAAGAGCACTGTCTGCTCTTCCAGAGGTCTAGAGTT  600

seq1  CAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTACTGGGATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTACTGGGATCTG  650

seq1  ATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCACATACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCACATACAT  700

seq1  AAAATAAATAAACAAACCTTTTTTTAAAAAAGAAAAAAACGAGTTTTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATAAACAAACCTTTTTTTAAAAAAGAAAAAAACGAGTTTTGTT  750

seq1  TATTTGTTTTGAGACAGGGTTTCTGGCTGT--CCTGGAACTCGCTCTGTA  798
      ||||||||||||||||||||||||||||||  || | | | |||||||||
seq2  TATTTGTTTTGAGACAGGGTTTCTGGCTGTCCCCCGCACCCCGCTCTGTA  800

seq1  AACCAGGCTGGCCTTGAAC-TCACAGAGA-TCT-GTCTGCCTCTGCCTCC  845
      ||||||||||||||||||| ||||||||| ||| ||||||||||||||||
seq2  AACCAGGCTGGCCTTGAACTTCACAGAGATTCTGGTCTGCCTCTGCCTCC  850

seq1  C-AAGCGCC-GGTAAA-GGTGTACACCACCATAGCCTGGCAG-AAAATAA  891
      | ||||||| |||||| ||||||||||||||||| ||||||| |||||||
seq2  CAAAGCGCCGGGTAAAGGGTGTACACCACCATAG-CTGGCAGAAAAATAA  899

seq1  GTTTTAAGTTTTAGTTCTTTTCCCCACCCCCTTTTTCCACGCCATCTCCA  941
      |||||||||||||||||||||||||||||||||||| |||||||||  ||
seq2  GTTTTAAGTTTTAGTTCTTTTCCCCACCCCCTTTTT-CACGCCATCCTCA  948

seq1  AGTCTAGCCTCAGACT--CTACCCCAGAACA-TCATATCCCACCC-TCTC  987
      ||||||||||||||||   |||||||||||| ||||||||||||| ||||
seq2  AGTCTAGCCTCAGACTTCTTACCCCAGAACATTCATATCCCACCCTTCTC  998

seq1  TCAGT-GCCATCTCT-AAAACT-GCCCCAACACCC-TTACATCGGAGTAT  1033
      ||||| ||||||||| |||||| |||||||||||| ||||||||||||||
seq2  TCAGTGGCCATCTCTAAAAACTGGCCCCAACACCCTTTACATCGGAGTAT  1048

seq1  GCA-TATTCT-GGGCACTCTCTC  1054
      ||| |||| | ||||||||||||
seq2  GCATTATTTTCGGGCACTCTCTC  1071

seq1: chr7_20053168_20054088
seq2: B6Ng01-243P06.g_65_992 (reverse)

seq1  CCACGCCTCCAGCC-ACTGAGCCACG-CCCCAG-CCACTGAGCCACG-CC  46
      |||||| ||||||| ||||||||||| |||||| ||||||||||||| ||
seq2  CCACGCTTCCAGCCAACTGAGCCACGCCCCCAGCCCACTGAGCCACGCCC  50

seq1  CCAGCCACTCCCT-GGGGAAATTCT-AGGCAG-CCAGTGGCTCTTCTACT  93
      ||||||||| ||| ||||||||| | |||||| ||||||||||||||| |
seq2  CCAGCCACTACCTGGGGGAAATTTTAAGGCAGCCCAGTGGCTCTTCTATT  100

seq1  GAGCCAAACGCCATTATATTTTTTGTTTCGCTCATAATTGTTGTTTGTTT  143
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAGCCAAACGCCATTATA-TTTTTGTTTCGCTCATAATTGTTGTTTGTTT  149

seq1  GTTTGTTTGTTTGTTTTGAGACTGGGTTTCATCTGGTCTTGCTGGCCTGT  193
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTG-TTGTTTTGAGACTGGGTTTCATCTGGTCTTGCTGGCCTGT  198

seq1  GTGTAGA-CCATGGTAGAACAGGTGTCATTTCTCCTGTTCTGTCTCCTGA  242
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGACCCATGGTAGAACAGGTGTCATTTCTCCTGTTCTGTCTCCTGA  248

seq1  GTGCTGGGA-TTTAGGGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  291
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATTTTAGGGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  298

seq1  AGAGAGAGAGAGATTATGTGTGTGAGAGAAAGAAAGGCATATAGTTTAGT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGATTATGTGTGTGAGAGAAAGAAAGGCATATAGTTTAGT  348

seq1  TCAAGCTGGCTTTTAAAAACTAACAGTGGCTCTCCCGGGGACAGTGCTTA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTGGCTTTTAAAAACTAACAGTGGCTCTCCCGGGGACAGTGCTTA  398

seq1  GAGGCACGCAGGGTGGTCCAGCGTTTGACATACTGTCTTTAGGCTTTCCT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACGCAGGGTGGTCCAGCGTTTGACATACTGTCTTTAGGCTTTCCT  448

seq1  ACAACACAGCGTCTAACAAAACTAGGCTGCCTCGAACCCCTGGCAACAGG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACAGCGTCTAACAAAACTAGGCTGCCTCGAACCCCTGGCAACAGG  498

seq1  ATTGTTTACCTTTACACAAAGAAGGTTGGGGAAGCACCTAAGTTGCATGC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTACCTTTACACAAAGAAGGTTGGGGAAGCACCTAAGTTGCATGC  548

seq1  GGAGTGTGTCCAGGCACACTGCGAGGGGAGCGGTTCGCGCTGTGAGACCC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTGTCCAGGCACACTGCGAGGGGAGCGGTTCGCGCTGTGAGACCC  598

seq1  AAATCCTTATGAGATTGTTTAAGACAGAGCAGCACGTCAGCAGAGCCTGT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTATGAGATTGTTTAAGACAGAGCAGCACGTCAGCAGAGCCTGT  648

seq1  GGCGGTTCCATGTGCGCCAAGTGTGTCCGCGACAAGATCAAGCGGGCTTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGTTCCATGTGCGCCAAGTGTGTCCGCGACAAGATCAAGCGGGCTTT  698

seq1  CCTTACTGAGGAACAGGAAGTTGTTATGAAAGTGTTGAAGGGGGCTGGAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTGAGGAACAGGAAGTTGTTATGAAAGTGTTGAAGGGGGCTGGAT  748

seq1  AGACAGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGT  798

seq1  TCAATTCCCAGCAACCACATAGTGGTTCACAGCCATCTGTAATGGGATCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCCCAGCAACCACATAGTGGTTCACAGCCATCTGTAATGGGATCT  848

seq1  GATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTCATATTAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTCATATTAA  898

seq1  ATAAATAAATAAATCTATAGCACAGAATTC  921
      ||||||||||||||||||||||||||||||
seq2  ATAAATAAATAAATCTATAGCACAGAATTC  928