BAC Information

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BAC

Clone NameB6Ng01-244C03
Chromosome7 (Build37)
Map Location 128,944,641 - 129,127,335
singlet/doubletdoublet
Overlap geneScnn1b, Cog7
Upstream geneE030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e, Cdr2, 4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa, LOC668556, Hs3st2, Usp31, Scnn1g
Downstream geneGga2, Ears2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1, Ern2, 2010110P09Rik, Prkcb1, LOC668486, Cacng3, 4930413G21Rik, Rbbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244C03.bB6Ng01-244C03.g
ACCGA053342GA053343
length1,081775
definitionB6Ng01-244C03.b B6Ng01-244C03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,944,641 - 128,945,170)(129,126,564 - 129,127,335)
sequence
gaattcccctgtactggggcatataaagtttgcaagtccaatgggcctct
ctttccagtgatggccgactaggccatcttttgatatatatgcagctaga
gtcaagagctcctcagctattaaaaagaatgaatttatgaaattcctagc
caaatggatggacctggagggcatcatcctgagtgaggtaacacattcac
aaagaaactcacacaatatgtattcactgataagtggatattagccccaa
acctaggatacccaagatataagatataatttgctaaacacatgaaactc
aaggagaatgaagactgaagtgtggacactatgcccctccttagatttgg
gaacaaaacacccatggaaggagttacagagacggagtttggagctgaga
tgaaaggatggaccatgtagagactgccatagccagggatccaccccata
atcagcatccaaacgctgacaccattgcatacactagcaagattttattg
aaaggacgcagatgtagctgtctcttgtgagactatgccggggcccagca
aacacagaagtggatgctcacagtcagctaatggatggatcatagggctc
ccaatggaggagctagagaaagtagccaaggagctaaagggatctgcaac
cctataggtggaacaacattatgagctaaccagtaccccggagctcttga
ctctaggggtgtagcttctaagcctacatttgcatcataaaagacattgt
cacctccgctctgcactgctcactctgagagtgctgggccaggatactca
ggaccctcaattggccctgatgttgataaaggaatgaacccagagctcca
gcatggctgctcatgagtgggaccccttggaaatgatgcctccagcctca
gctcacattgtcacttcagtgacacattgtcacttcctgagcctgaacct
cccagtgagctactcctgatctcccaatgcactcagactctgaagatgat
aaacacttattgctgtctctgagttgagggtacttttgttatggtcctta
ctggcacgtatgtgggttctgttatcatgct
gaattccacccgtgggttggtttgtttgttttttgagacagggtctcttt
atacagcccctggctgttctggaactcacattgaggaccagactagcctt
gaattccccttggcctgcctctgcctcctgagcattgaaaggtgtgtgcc
cagctaacaataatgagttggaaacttagtctttcagcagcaattggtgg
gacaactcagaagatgatcaaggacatatgttttgaaggacactaatgat
catctttactaaaatacatggaacacttattcaatgactgcatatatttc
tttcttttcttattcttttttttttttttttttttttttttttttgggaa
agggtttctctgtatagccctggctgtcctggaactcactttgtagacca
ggctggcctcgaactcaaaaatccacctgcctctgcctgccgagtgctgg
gattaaaggcgggtggcaccccaccccactatatatttcttttttgctgt
ttggtttgtttttgaaacagggtcttgctacctatgcctaaatgatttca
aacttaaagaatcttcctctttctgcatccccagtgctgggattgcaggc
gtgtatcaccacatgaagtcagacatgtgattttcttcccccccttctct
gcttccccctctttatattgaaaattcatgtcccatagtgctgtgtttca
aaagacaatctccctaactgtactatggcattttaccccctgttcccttc
tgcaatatcttccctctttccacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_128944641_128945170
seq2: B6Ng01-244C03.b_594_1123

seq1  ACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCATAGGGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCATAGGGCTCC  50

seq1  CAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACC  100

seq1  CTATAGGTGGAACAACATTATGAGCTAACCAGTACCCCGGAGCTCTTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGGTGGAACAACATTATGAGCTAACCAGTACCCCGGAGCTCTTGAC  150

seq1  TCTAGGGGTGTAGCTTCTAAGCCTACATTTGCATCATAAAAGACATTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGGTGTAGCTTCTAAGCCTACATTTGCATCATAAAAGACATTGTC  200

seq1  ACCTCCGCTCTGCACTGCTCACTCTGAGAGTGCTGGGCCAGGATACTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCGCTCTGCACTGCTCACTCTGAGAGTGCTGGGCCAGGATACTCAG  250

seq1  GACCCTCAATTGGCCCTGATGTTGATAAAGGAATGAACCCAGAGCTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCAATTGGCCCTGATGTTGATAAAGGAATGAACCCAGAGCTCCAG  300

seq1  CATGGCTGCTCATGAGTGGGACCCCTTGGAAATGATGCCTCCAGCCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATGGCTGCTCATGAGTGGGACCCCTTGGAAATGATGCCTCCAGCCTCA-  349

seq1  GCTCACATTGTCACTTCAGTGACCACATTGTCACTTCCTGAGCCTGAACC  400
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCTCACATTGTCACTTCAGTGA-CACATTGTCACTTCCTGAGCCTGAACC  398

seq1  TCCCAGTTGAGCTACTCCTGATCTCCCAATGCACTCAGACTCTGAAGATG  450
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAG-TGAGCTACTCCTGATCTCCCAATGCACTCAGACTCTGAAGATG  447

seq1  ATAAACACTTATTGCTGTCTCTGAGTTTGAGGGTAC-TTTGTTATGGGTC  499
      ||||||||||||||||||||||||| |||||||||| ||||||||||  |
seq2  ATAAACACTTATTGCTGTCTCTGAG-TTGAGGGTACTTTTGTTATGGTCC  496

seq1  CTACTGGCACGTATGT--GTTCTG-TATCATGCT  530
       |||||||||||||||  |||||| |||||||||
seq2  TTACTGGCACGTATGTGGGTTCTGTTATCATGCT  530

seq1: chr7_129126564_129127335
seq2: B6Ng01-244C03.g_64_838 (reverse)

seq1  AGGTGGGAAAGAGGGAAGATA-TGCAGAAGGGAACA-GGGGTAAAATG-C  47
      |||| |||||||||||||||| |||||||||||||| ||||||||||| |
seq2  AGGT-GGAAAGAGGGAAGATATTGCAGAAGGGAACAGGGGGTAAAATGCC  49

seq1  ATAGTACAGTTAGGTAGATTGTCTTTATGAAACACAGCACTAT-GGACAT  96
      |||||||||||||| ||||||||||| |||||||||||||||| ||||||
seq2  ATAGTACAGTTAGGGAGATTGTCTTT-TGAAACACAGCACTATGGGACAT  98

seq1  GAATATTCAATATAAAGAAGAGGAAGCAGAGAA-GGGAGGAAGAAAATCA  145
      |||| ||||||||||||| | |||||||||||| ||| ||||||||||||
seq2  GAATTTTCAATATAAAGAGGGGGAAGCAGAGAAGGGGGGGAAGAAAATCA  148

seq1  CATGTCTGACTTCATGTGGTGATACACGCCTGCAATCCCAGCACTGGGGA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTGACTTCATGTGGTGATACACGCCTGCAATCCCAGCACTGGGGA  198

seq1  TGCAGAAAGAGGAAGATTCCTTAAGTTTGAAATCATTTAGGCATACGTAG  245
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  TGCAGAAAGAGGAAGATTCTTTAAGTTTGAAATCATTTAGGCATAGGTAG  248

seq1  CAAGACCCTGTCTCAAAAACAAACCAAACAGCAAAAAAGAAATATATAGT  295
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCCTGTTTCAAAAACAAACCAAACAGCAAAAAAGAAATATATAGT  298

seq1  CGGGTGTGGTGCCACACGCCTTTAATCCCAGCACTCGGCAGGCAGAGGCA  345
       ||||| |||||||| ||||||||||||||||||||||||||||||||||
seq2  GGGGTGGGGTGCCACCCGCCTTTAATCCCAGCACTCGGCAGGCAGAGGCA  348

seq1  GGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGG  395
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATTTTTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGG  398

seq1  ACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAA  445
      ||||||||||||||||||||||||||| || |||||||||||||||||||
seq2  ACAGCCAGGGCTATACAGAGAAACCCTTTCCCAAAAAAAAAAAAAAAAAA  448

seq1  AAAAAAAAAAAAGAATAAGAAAAGAAAGAAATATATGCAGTCATTGAATA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAGAATAAGAAAAGAAAGAAATATATGCAGTCATTGAATA  498

seq1  AGTGTTCCATGTATTTTAGTAAAGATGATCATTAGTGTCCTTCAAAACAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCCATGTATTTTAGTAAAGATGATCATTAGTGTCCTTCAAAACAT  548

seq1  ATGTCCTTGATCATCTTCTGAGTTGTCCCACCAATTGCTGCTGAAAGACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTTGATCATCTTCTGAGTTGTCCCACCAATTGCTGCTGAAAGACT  598

seq1  AAGTTTCCAACTCATTATTGTTAGCTGGGCACACACCTTTCAATGCTCAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCCAACTCATTATTGTTAGCTGGGCACACACCTTTCAATGCTCAG  648

seq1  GAGGCAGAGGCAGGCCAAGGGGAATTCAAGGCTAGTCTGGTCCTCAATGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGCAGGCCAAGGGGAATTCAAGGCTAGTCTGGTCCTCAATGT  698

seq1  GAGTTCCAGAACAGCCAGGGGCTGTATAAAGAGACCCTGTCTCAAAAAAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCAGAACAGCCAGGGGCTGTATAAAGAGACCCTGTCTCAAAAAAC  748

seq1  AAACAAACCAACCCACGGGTGGAATTC  772
      |||||||||||||||||||||||||||
seq2  AAACAAACCAACCCACGGGTGGAATTC  775