BAC Information

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BAC

Clone NameB6Ng01-244F03
Chromosome6 (Build37)7 (Build37)
Map Location 78,947,022 - 78,948,01925,482,511 - 25,483,284
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
Downstream geneLOC384440, LOC621815, LOC100043392
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244F03.bB6Ng01-244F03.g
ACCGA053484GA053485
length9911,070
definitionB6Ng01-244F03.b B6Ng01-244F03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(78,947,022 - 78,948,019)(25,482,511 - 25,483,284)
sequence
gaattccactaggatgaattctatctggatgttgtggcaaaatccataat
tcttacatatagaaggacatacaagtaaactgagaattcctgagcagccc
agcaaagcagaaagttgtcgtccttctctgttctcatgagcaaaagtaag
cttcagctaataaatacaaaacatcactgcatacccgggacagaaaagcc
ttaacattggcattggattctgagtcatttgaaggacatagaaacagtat
gtttaaaaagggaagataattttcctcaaattaaaatttagactaaaacc
aatatagtttagtgtgcatttgattaaaaatttttctggagggcattagt
catgaggatgtagcttagtgatagccagccatacagtatgtaagtctgca
tttaatccctagtatttcagaaaattcaaactttgtatattttatccaag
aattaatatatatatatatatatacatacatatatatatatatatatata
tatatatataaacttatttttgtagttgatatttccaataaatcaaagtt
ctgaatcttaagttacagcaatacaagcaatatttctaaaaaaatttaaa
ggggattgtactgaaatagcaagcacagggcctacatggggctgcaccat
gtcatctgagtatatattatgacttacagcttagaaattttatggaaccc
ctgagtatatgaatgagtaggtctctgagtcttcttttttctcttgggct
gttttccttccattattgccttgaccaacactgatgtgatggttttattt
tatctttcagttgttatgcctgagaagcctaatctttcctaatgtgacaa
agggggtggatccagttcagcgggggagggtggcagaggagaaactgaga
agaagtattggactgcgttgtcaggatatactgtattgagaaaagactat
ttccctaaagaaaaaatgaacaagttatatacgatataagt

gaattcccatctgtttctctgagtaatgcttatgaaagacccacaacgtg
aggactcccccacgttctgactcaggagaggcaacaccccaaaatcacct
acaagaaacggtcttgttgcaaactgcaagaggatttttattcaggagca
ctctcaggccccaggtcatacaccacacaggggtagaggaccatggcgcc
ccgagtagctgagtaagggggtatttaaaggaagaaaccacaactcaagg
aggtgggaagggcgttgttggaaaataccaaaaatactagttaagagtca
caaggaagtgcaaagttacaagagtcatgaggaatacctggtaattgtga
gggttatttctcaaaacagtttctaagagcccctaacaaaagcacatttg
catagcgggttccagcaatggtcaggatgactttttttgaatgagcactc
tttgaacccaggaagcgggtgggtagaggaatgtcgctatctgttttatg
attagcatacctttacaaaggccacattcccaagactgggcctaaaggcc
tagaattctctttttactttgttatactttcattccccacttctacttgt
tagtagttctaatcttagaactagacactatcttttccctgacatatttg
attctttagggcatggtactgttgtctcaaagctaaaagccgcactgcac
taattcttgtcttaataaaggtgacttgtctatttaacacacatggacct
ataattaaaagcagaagcaaaatcaaaaggggtctcataaaggtagaaag
tagggtggttaagagtacaagataagggcctttccaccggagtctcaagg
ttttctgcgtggagacgtctagcagtcttctcttgagtaggccttctgga
gctgcttctttgctcgctgtctcactcactggagccaccttgagccctag
agaacaagctgggaaagcagcatgtcagcactatgtacagaggctatttt
taccagtggaggggggcccctgtagagtatttatagggggttcagtctaa
ctgtcaggggtgttttctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_78947022_78948019
seq2: B6Ng01-244F03.b_44_1034

seq1  GAATTCCACTAGGATGAATTCTATCTGGATGTTGTGGCAAAATCCATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTAGGATGAATTCTATCTGGATGTTGTGGCAAAATCCATAAT  50

seq1  TCTTACATATAGAAGGACATACAAGTAAACTGAGAATTCCTGAGCAGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACATATAGAAGGACATACAAGTAAACTGAGAATTCCTGAGCAGCCC  100

seq1  AGCAAAGCAGAAAGTTGTCGTCCTTCTCTGTTCTCATGAGCAAAAGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGCAGAAAGTTGTCGTCCTTCTCTGTTCTCATGAGCAAAAGTAAG  150

seq1  CTTCAGCTAATAAATACAAAACATCACTGCATACCCGGGACAGAAAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTAATAAATACAAAACATCACTGCATACCCGGGACAGAAAAGCC  200

seq1  TTAACATTGGCATTGGATTCTGAGTCATTTGAAGGACATAGAAACAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTGGCATTGGATTCTGAGTCATTTGAAGGACATAGAAACAGTAT  250

seq1  GTTTAAAAAGGGAAGATAATTTTCCTCAAATTAAAATTTAGACTAAAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAAGGGAAGATAATTTTCCTCAAATTAAAATTTAGACTAAAACC  300

seq1  AATATAGTTTAGTGTGCATTTGATTAAAAATTTTTCTGGAGGGCATTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGTTTAGTGTGCATTTGATTAAAAATTTTTCTGGAGGGCATTAGT  350

seq1  CATGAGGATGTAGCTTAGTGATAGCCAGCCATACAGTATGTAAGTCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGATGTAGCTTAGTGATAGCCAGCCATACAGTATGTAAGTCTGCA  400

seq1  TTTAATCCCTAGTATTTCAGAAAATTCAAACTTTGTATATTTTATCCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCCTAGTATTTCAGAAAATTCAAACTTTGTATATTTTATCCAAG  450

seq1  AATTAATATATATATATATATATACATACATATATATATATATATATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATATATATATATATATATACATACATATATATATATATATATATA  500

seq1  TATATATATAAACTTATTTTTGTAGTTGATATTTCCAATAAATCAAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATAAACTTATTTTTGTAGTTGATATTTCCAATAAATCAAAGTT  550

seq1  CTGAATCTTAAGTTACAGCAATACAAGCAATATTTCTAAAAAAATTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCTTAAGTTACAGCAATACAAGCAATATTTCTAAAAAAATTTAAA  600

seq1  GGGGATTGTACTGAAATAGCAAGCACAGGGCCTACATGGGGCTGCACCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTGTACTGAAATAGCAAGCACAGGGCCTACATGGGGCTGCACCAT  650

seq1  GTCATCTGAGTATATATTATGACTTACAGCTTAGAAATTTTATGGAACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTGAGTATATATTATGACTTACAGCTTAGAAATTTTATGGAACCC  700

seq1  CTGAGTATATGAATGAGTAGGTCTCTGAGTCTTCTTTTTTCTCTTGGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTATATGAATGAGTAGGTCTCTGAGTCTTCTTTTTTCTCTTGGGCT  750

seq1  GTTTTCCTTCCATTATTGCCTTGACCAACACTGATGTGATGGTTTTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTTCCATTATTGCCTTGACCAACACTGATGTGATGGTTTTATTT  800

seq1  TATCTTTTCAGTTGTTATGCCTGAGAAGCCTAATCTTTCCTAATGTGACA  850
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATC-TTTCAGTTGTTATGCCTGAGAAGCCTAATCTTTCCTAATGTGACA  849

seq1  AAGGGGGTGGATCCAGTTCAGC-GGGGAGGGTGGCAGAGGAGAAACTGAG  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGGGGGTGGATCCAGTTCAGCGGGGGAGGGTGGCAGAGGAGAAACTGAG  899

seq1  -AGAAGTATTGGGACTGGGGTTGTCAGGATATACTGTA-TGAGAAAAGAC  947
       ||||||||| ||||| | ||||||||||||||||||| |||||||||||
seq2  AAGAAGTATT-GGACT-GCGTTGTCAGGATATACTGTATTGAGAAAAGAC  947

seq1  TATTTTCACTAAAAAGAAAAAAAATAGAACAAAGTATATACAAATATAAG  997
      || |||| ||  ||||||||||    ||||||  |||||||  |||||||
seq2  TA-TTTCCCT--AAAGAAAAAA---TGAACAAGTTATATAC-GATATAAG  990

seq1  T  998
      |
seq2  T  991


seq1: chr7_25482511_25483284
seq2: B6Ng01-244F03.g_378_1135

seq1  AAGTTACAAGAGTCATGAGGAATACCTGGTAATTGTGAGGGTTATTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACAAGAGTCATGAGGAATACCTGGTAATTGTGAGGGTTATTTCTC  50

seq1  AAGACAGTTTCTAAGAGCCCCTAACAATAGCACATTTGCATAGTGGGTTC  100
      || |||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  AAAACAGTTTCTAAGAGCCCCTAACAAAAGCACATTTGCATAGCGGGTTC  100

seq1  CAGCAATGGTCAGGGTGACTTTCTTTGAATGAGCACTCTTTGAACCCAGG  150
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  CAGCAATGGTCAGGATGACTTTTTTTGAATGAGCACTCTTTGAACCCAGG  150

seq1  AAATGGGTGGGTGGAGGAATGTCGCTATCTGTTTTATGATTAGCATACCT  200
      ||  |||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGCGGGTGGGTAGAGGAATGTCGCTATCTGTTTTATGATTAGCATACCT  200

seq1  TCACAAAGGCCACATTCCCAAGCCTGGGCCTAAAGGCCTAGAATTTTGTT  250
      | |||||||||||||||||||| |||||||||||||||||||||| | ||
seq2  TTACAAAGGCCACATTCCCAAGACTGGGCCTAAAGGCCTAGAATTCTCTT  250

seq1  TTTACTTTGTTATACTTTCATTCCCCCCTTTTACTTGTTAGTAGTTCTTA  300
      |||||||||||||||||||||||||| ||| ||||||||||||||||| |
seq2  TTTACTTTGTTATACTTTCATTCCCCACTTCTACTTGTTAGTAGTTCTAA  300

seq1  TCTTAGTACTAGACACGATCTTCTCCCTGACATACTTGATCCTTTAGGGC  350
      |||||| ||||||||| ||||| ||||||||||| ||||| |||||||||
seq2  TCTTAGAACTAGACACTATCTTTTCCCTGACATATTTGATTCTTTAGGGC  350

seq1  ATGGTACTGTTGTCTCAAAACTAAAAGCCGCACTGCACTAATTCTTGTTC  400
      ||||||||||||||||||| ||||||||||||||||||||||||||||  
seq2  ATGGTACTGTTGTCTCAAAGCTAAAAGCCGCACTGCACTAATTCTTGTCT  400

seq1  TAATAAAGGTGACTTGCCTATTTAACACACATGGACCTATAATTAAAAGC  450
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAATAAAGGTGACTTGTCTATTTAACACACATGGACCTATAATTAAAAGC  450

seq1  AGAAGCAAAATCAAAAGGGGTCCCATAAAGGTAGAAAGTAGGGTGATCAA  500
      |||||||||||||||||||||| |||||||||||||||||||||| | ||
seq2  AGAAGCAAAATCAAAAGGGGTCTCATAAAGGTAGAAAGTAGGGTGGTTAA  500

seq1  GAGTACAAGATAAGGGCCTTTCCACCGGAGTCTCAAGGTTTTCTGCGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACAAGATAAGGGCCTTTCCACCGGAGTCTCAAGGTTTTCTGCGTGG  550

seq1  AGACGTCTAATGTAGCAGGTCTTCTTCTCTTGAGTAGGCCTTCTGGAGCT  600
      |||||||     ||||||    ||||||||||||||||||||||||||||
seq2  AGACGTC-----TAGCAG----TCTTCTCTTGAGTAGGCCTTCTGGAGCT  591

seq1  GCTTTTTCCGCTGGCTGTCTCACACACTGGAG-CACCTTGAG-CCTACAG  648
      |||| ||  ||| |||||||||| |||||||| ||||||||| |||| ||
seq2  GCTTCTT-TGCTCGCTGTCTCACTCACTGGAGCCACCTTGAGCCCTAGAG  640

seq1  AACAAAGGCTGGGAAAGCAGCATGTCAGCACTATGTACAAAGGCTATTTT  698
      |||||  |||||||||||||||||||||||||||||||| ||||||||||
seq2  AACAA--GCTGGGAAAGCAGCATGTCAGCACTATGTACAGAGGCTATTTT  688

seq1  TACCAGTGGAGGGGGCCCTCTGTAGAGTAATTTATAGGGGGGGGGGCCAT  748
      ||||||||||||||| || ||||||||| |||||||    |||||  || 
seq2  TACCAGTGGAGGGGGGCCCCTGTAGAGT-ATTTATA----GGGGGTTCAG  733

seq1  TCTAAACTGTCCAGGGGTG-TTTCTAT  774
      ||| |||||| |||||||| |||||||
seq2  TCT-AACTGT-CAGGGGTGTTTTCTAT  758


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