BAC Information

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BAC

Clone NameB6Ng01-244N06
Chromosome7 (Build37)
Map Location 6,796,712 - 6,981,450
singlet/doubletdoublet
Overlap geneUsp29, Aurkc
Upstream geneV1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, LOC627961
Downstream geneLOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40, Vmn2r36, LOC638170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244N06.bB6Ng01-244N06.g
ACCGA053868GA053869
length1,02593
definitionB6Ng01-244N06.b B6Ng01-244N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,980,451 - 6,981,450)(6,796,712 - 6,796,804)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttgcagtttca
tgaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcacactgggtgcttttatgtaggaggaccaagca
aggaaggcaaggcatcaaggacacacctctatatctgatatgtaaatatc
tatatctgatatagaggataggaactgtaagctgtcacaggatcgtggag
ataggtctttcttccttgctgtggtacgcaggttggaagggaacctggac
atggctgcatactcctaaaccagagcccgcaccagcccagaagtcatcac
cccctcctacccaccccactccccataattcagtggtgccgtagggatag
gattgtgggtaatgtagtttcttcccagtatccagccaagtatttatcag
ctagtaactccttctggccaaagactgagggcaagggtggagggggggaa
acagtaatttggctcaccactctcacattatatggaattcaccctgaatt
ctctggccatttgggttaatggcaagtgtttagggatctcccagcacatg
actgattcttttaacttcctacttctgaggtccagagagaactgctttcg
cacctaccagtcttgggcaatggagattttaagttccttcataactgaaa
ggcctccactttgaagtcccactgtgtatcagagtggaaatgacccctgt
agttcaatgagtccccagttgtgggtatctcagtttgacagcaagcatta
atggaccattgtttgctttcctttcagtttctggaggcatgggggagagt
tttggttagcctaagagcacttgct
aagatagcaaggagagtgtggatgtcctgagctaatgcttgaaattcatt
ttgaaagagaggggtaaaggagagatgggaggagggaagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_6980451_6981450
seq2: B6Ng01-244N06.b_46_1070 (reverse)

seq1  AGCAAGTGCTCTT-GGCTA--CCAAACTCT-CCCCATGCCT-CAG-AACT  44
      ||||||||||||| |||||  | ||||||| |||||||||| ||| ||||
seq2  AGCAAGTGCTCTTAGGCTAACCAAAACTCTCCCCCATGCCTCCAGAAACT  50

seq1  GAAAG--AAGCAA--CATG--TCATT-ATGCTTGCTGTC-AACTGAGATA  86
      |||||  ||||||   |||   |||| |||||||||||| ||||||||||
seq2  GAAAGGAAAGCAAACAATGGTCCATTAATGCTTGCTGTCAAACTGAGATA  100

seq1  CCCAC-ACTTGGGACTCA-TGAACTACA-GGGTCATTT-CACTCTGATAC  132
      ||||| ||| |||||||| ||||||||| ||||||||| |||||||||||
seq2  CCCACAACTGGGGACTCATTGAACTACAGGGGTCATTTCCACTCTGATAC  150

seq1  ACAGTGGGACTTC-AAGTGGAGGCCTTTCAGTTATGAA-GAAC-TAAAAT  179
      ||||||||||||| |||||||||||||||||||||||| |||| ||||||
seq2  ACAGTGGGACTTCAAAGTGGAGGCCTTTCAGTTATGAAGGAACTTAAAAT  200

seq1  CTCCATTG-CCAAGACTGGTAGGTGCG-AAGCAGTTCTCTCTGGACCTCA  227
      |||||||| |||||||||||||||||| ||||||||||||||||||||||
seq2  CTCCATTGCCCAAGACTGGTAGGTGCGAAAGCAGTTCTCTCTGGACCTCA  250

seq1  GAAGTAGGAAGTTAAAAGAATCAGTCATGTGCT-GGAGATCCCT-AACAC  275
      ||||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  GAAGTAGGAAGTTAAAAGAATCAGTCATGTGCTGGGAGATCCCTAAACAC  300

seq1  TTGCCATTAACCCAAATGGCCAGAGAATTCAGGGTGAATTCCATATAATG  325
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATTAACCCAAATGGCCAGAGAATTCAGGGTGAATTCCATATAATG  350

seq1  TGAGAGTGGTGAGCCAAATTACTGTTTCCCCCCCTCCACCCTTGCCCTCA  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTGGTGAGCCAAATTACTGTTTCCCCCCCTCCACCCTTGCCCTCA  400

seq1  GTCTTTGGCCAGAAGGAGTTACTAGCTGATAAATACTTGGCTGGATACTG  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGGCCAGAAGGAGTTACTAGCTGATAAATACTTGGCTGGATACTG  450

seq1  GGAAGAAACTACATTACCCACAATCCTATCCCTACGGCACCACTGAATTA  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAACTACATTACCCACAATCCTATCCCTACGGCACCACTGAATTA  500

seq1  TGGGGAGTGGGGTGGGTAGGAGGGGGTGATGACTTCTGGGCTGGTGCGGG  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGTGGGGTGGGTAGGAGGGGGTGATGACTTCTGGGCTGGTGCGGG  550

seq1  CTCTGGTTTAGGAGTATGCAGCCATGTCCAGGTTCCCTTCCAACCTGCGT  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTTTAGGAGTATGCAGCCATGTCCAGGTTCCCTTCCAACCTGCGT  600

seq1  ACCACAGCAAGGAAGAAAGACCTATCTCCACGATCCTGTGACAGCTTACA  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGCAAGGAAGAAAGACCTATCTCCACGATCCTGTGACAGCTTACA  650

seq1  GTTCCTATCCTCTATATCAGATATAGATATTTACATATCAGATATAGAGG  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTATCCTCTATATCAGATATAGATATTTACATATCAGATATAGAGG  700

seq1  TGTGTCCTTGATGCCTTGCCTTCCTTGCTTGGTCCTCCTACATAAAAGCA  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTTGATGCCTTGCCTTCCTTGCTTGGTCCTCCTACATAAAAGCA  750

seq1  CCCAGTGTGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGA  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGTGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGA  800

seq1  TCGAGAATTGACAAATGGGACCTCATGAAACTGCAAAGTTTCTGCAAGGC  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGAATTGACAAATGGGACCTCATGAAACTGCAAAGTTTCTGCAAGGC  850

seq1  AAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGA  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGA  900

seq1  TCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAA  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAA  950

seq1  GAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATG  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATG  1000

seq1  GGGCTCAGAACTGAACAAAGAATTC  1000
      |||||||||||||||||||||||||
seq2  GGGCTCAGAACTGAACAAAGAATTC  1025

seq1: chr7_6796712_6796804
seq2: B6Ng01-244N06.g_75_167

seq1  AAGATAGCAAGGAGAGTGTGGATGTCCTGAGCTAATGCTTGAAATTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGCAAGGAGAGTGTGGATGTCCTGAGCTAATGCTTGAAATTCATT  50

seq1  TTGAAAGAGAGGGGTAAAGGAGAGATGGGAGGAGGGAAGGGAG  93
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGAGAGGGGTAAAGGAGAGATGGGAGGAGGGAAGGGAG  93