BAC Information

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BAC

Clone NameB6Ng01-244P03
Chromosome7 (Build37)
Map Location 85,427,010 - 85,428,153
singlet/doubletsinglet
Overlap geneNtrk3
Upstream geneA330068G13Rik
Downstream geneMrpl46, Mrps11, Det1, Isg20l1, Isg20, Acan, Hapln3, Mfge8, Abhd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244P03.bB6Ng01-244P03.g
ACCGA053958GA053959
length1,1711,139
definitionB6Ng01-244P03.b B6Ng01-244P03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
cccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcaggacttgaagtttttatcatac
agatcttcacttcccttcgttagagtcacgccgagatatttatattattt
gtggctattgagaaggtgtgttcctgattctttctcagctgttattcttg
tgtagagaaaggcatgacttgtttgagttaattttatatcagctacttca
cggaagctggtttatcacttagagttctctgtgggatttttagggtcact
tattatatactatccaattcatctgcaaaaggcatatgtggacctccctc
tttcacaactagtgacatgtg
gaattcagttctcctagtcagatcttcccattggtctagagaaaacagac
cagtcacttggtgccttaagacacttttcctgttgcttcaatcaaatacc
tgacaagaagtaacttaaaggagtcgcctttgacttgtggttagagggaa
tacagtccatttcagtggagacgttgtatcagtgggcatgactgtggaag
ctgctttctcatatcccaaaagatggagaggctgacagactatggccaga
accagagctaagctaaaatccatagacccactatcagtgacttacttctt
ccagtgagaccccgcctcttaaagcctccataaccctctaaaacagtcat
gatctcgggaccaagtggtcaagtacataagcctatagggtatctttcac
atccaaactataatacccagaaattccaacgccatgtgctataagaccca
tgatccacacctccagggcacctcctacccagcttcctatctgctttcct
tgagtctcaattgatttatgtatgtacacacacacacacacacacacaca
cacacacatactttgtgaaatgacttgcatgcaacagtcagagtaaaaag
tttctagtttgtcatcctttgacagcagtgataagcactgttagtctggg
aatagagctcaattggtacaatgcttgaatagcatatatgagaccctgct
ttccagcagcacataaactaaccatgggagcacatagctgtaatccaagc
cctgcagagacataggaaggagtatcagaagttcaaggtaatgattggct
gcatagcaagtttgaggctagcatggaatacatgaaatactacctcagag
atgaataaacaaaagacttagcaccatgcttagtgttatttatatgtcta
ggttagtctttggcttttgttgctgctgctgctgctgctgctgctgctgc
tgctgctgctgctgctgctgctgttgtttgttttaagtacagcacctaga
cctagggctttctattcaccaggcatacccctagcttgtcagcacatttt
aacgaggaaaattaaatatcctattagttctgagaagctctggaggtcct
cttgtgtgaagcaagcctattaagttagtctgttgtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_85427010_85428153
seq2: B6Ng01-244P03.g_65_1203

seq1  GAATTCAGTTCTCCTAGTCAGATCTTCCCATTGGTCTAGAGAAAACAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCTCCTAGTCAGATCTTCCCATTGGTCTAGAGAAAACAGAC  50

seq1  CAGTCACTTGGTGCCTTAAGACACTTTTCCTGTTGCTTCAATCAAATACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACTTGGTGCCTTAAGACACTTTTCCTGTTGCTTCAATCAAATACC  100

seq1  TGACAAGAAGTAACTTAAAGGAGTCGCCTTTGACTTGTGGTTAGAGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGAAGTAACTTAAAGGAGTCGCCTTTGACTTGTGGTTAGAGGGAA  150

seq1  TACAGTCCATTTCAGTGGAGACGTTGTATCAGTGGGCATGACTGTGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCCATTTCAGTGGAGACGTTGTATCAGTGGGCATGACTGTGGAAG  200

seq1  CTGCTTTCTCATATCCCAAAAGATGGAGAGGCTGACAGACTATGGCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTCTCATATCCCAAAAGATGGAGAGGCTGACAGACTATGGCCAGA  250

seq1  ACCAGAGCTAAGCTAAAATCCATAGACCCACTATCAGTGACTTACTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGCTAAGCTAAAATCCATAGACCCACTATCAGTGACTTACTTCTT  300

seq1  CCAGTGAGACCCCGCCTCTTAAAGCCTCCATAACCCTCTAAAACAGTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAGACCCCGCCTCTTAAAGCCTCCATAACCCTCTAAAACAGTCAT  350

seq1  GATCTCGGGACCAAGTGGTCAAGTACATAAGCCTATAGGGTATCTTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCGGGACCAAGTGGTCAAGTACATAAGCCTATAGGGTATCTTTCAC  400

seq1  ATCCAAACTATAATACCCAGAAATTCCAACGCCATGTGCTATAAGACCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAACTATAATACCCAGAAATTCCAACGCCATGTGCTATAAGACCCA  450

seq1  TGATCCACACCTCCAGGGCACCTCCTACCCAGCTTCCTATCTGCTTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCACACCTCCAGGGCACCTCCTACCCAGCTTCCTATCTGCTTTCCT  500

seq1  TGAGTCTCAATTGATTTATGTATGTACACACACACACACACACACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTCAATTGATTTATGTATGTACACACACACACACACACACACACA  550

seq1  CACACACATACTTTGTGAAATGACTTGCATGCAACAGTCAGAGTAAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATACTTTGTGAAATGACTTGCATGCAACAGTCAGAGTAAAAAG  600

seq1  TTTCTAGTTTGTCATCCTTTGACAGCAGTGATAAGCACTGTTAGTCTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGTTTGTCATCCTTTGACAGCAGTGATAAGCACTGTTAGTCTGGG  650

seq1  AATAGAGCTCAATTGGTACAATGCTTGAATAGCATATATGAGACCCTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGCTCAATTGGTACAATGCTTGAATAGCATATATGAGACCCTGCT  700

seq1  TTCCAGCAGCACATAAACTAACCATGGGAGCACATAGCTGTAATCCAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCAGCACATAAACTAACCATGGGAGCACATAGCTGTAATCCAAGC  750

seq1  CCTGCAGAGACATAGGAAGGAGTATCAGAAGTTCAAGGTAATGATTGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGAGACATAGGAAGGAGTATCAGAAGTTCAAGGTAATGATTGGCT  800

seq1  GCATAGCAAGTTTGAGGCTAGCATGGAATACATGAAATACTACCTCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCAAGTTTGAGGCTAGCATGGAATACATGAAATACTACCTCAGAG  850

seq1  ATGAATAAACAAAAGACTTAGCACCATGCTTAGTGTTATTTATATGTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAAACAAAAGACTTAGCACCATGCTTAGTGTTATTTATATGTCTA  900

seq1  GGTTAGTCTTTGGCTTTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTCTTTGGCTTTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC  950

seq1  TGCTGCTGCTGCTGCTGCTGCTGTTGTTTTGTTTTTAAGGTACAGCACCT  1000
      |||||||||||||||||||||||||| ||||||||  | |||||||||||
seq2  TGCTGCTGCTGCTGCTGCTGCTGTTG-TTTGTTTT--AAGTACAGCACCT  997

seq1  AGAACCTAGGGCTTCCTA-TCACCAGGCCATACCCCTAGCCTTGTCAGCA  1049
      || ||||||||||| ||| |||||||| ||||||||||| ||||||||||
seq2  AG-ACCTAGGGCTTTCTATTCACCAGG-CATACCCCTAG-CTTGTCAGCA  1044

seq1  CATTTTAACAGAAGAAAATAAAATATTCCCAATAAGTTCTGAG-AGCTCC  1098
      ||||||||| || |||||| ||||||  || || ||||||||| |||| |
seq2  CATTTTAAC-GAGGAAAATTAAATAT--CCTATTAGTTCTGAGAAGCT-C  1090

seq1  TGGAGGGTCCTC---TGTGTAGCAGAGCATATTAA-TTAGTCTG-TGTAA  1143
      |||| |||||||   |||| |||| ||| |||||| |||||||| |||||
seq2  TGGA-GGTCCTCTTGTGTGAAGCA-AGCCTATTAAGTTAGTCTGTTGTAA  1138

seq1  A  1144
      |
seq2  A  1139