BAC Information

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BAC

Clone NameB6Ng01-245K04
Chromosome7 (Build37)
Map Location 121,484,410 - 121,611,185
singlet/doubletdoublet
Overlap gene4933406I18Rik, Pde3b
Upstream geneBtbd10, Pth, LOC100042736, Mlstd2, EG434228, Spon1, Rras2, LOC668451, Copb1, Psma1
Downstream geneCyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967, LOC668472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245K04.bB6Ng01-245K04.g
ACCGA054469GA054470
length1,1041,045
definitionB6Ng01-245K04.b B6Ng01-245K04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,610,078 - 121,611,185)(121,484,410 - 121,485,461)
sequence
gaattcaaccacaacgaatacattctatatggattgccttctgactgtcc
tagatatagcagaaagtaatgacagcactcacccttctgactaatattta
taatttacatatttgtaaggttttgtaacattatttttcacaattttcag
acatacaatttgcataatgttgtataaatccattcaaaaattacaaattg
gctgctttagacttgtttatataccattcccagaaccagtggctgtcccc
agagaagcaaatgaaatactgtgaagttaaatctttgccacatcaagtac
aatcctccaaatgttaaccctcaatatgtactcatatttcttctaaccgc
actcaggagttttcttggtcaaacaccacttatgtatctaggcgaaggct
gacactttaaacaatggctgatagaaccctaaagctctttccaatgtctc
aaaaacatagcattatttttaaagcatcatttcatataaggcaagaatta
aaaacacttggacaagtttttgtaatcatcttttgaaacttactagaagc
caaaatggaatggttaagacattgtttccaagttgcgctgattttgtgaa
ggctctagattctgtaactccatatcggtaagccatttaatgtgctgttc
actagaaaggaagtatcagctttttgagaaagactccttttaaaaaattc
aacaatttcagggcagcactccctgctgagacaaacaattgaacaaattt
cctagcccttgggggaataaatatttcagtctttaggagaagctgttgac
aacataacaaggaatttgaggctgccaagagcctgatattctcaatcttt
ccctgacttatttagatatctatcccacaaaatcagagaatctagaaaat
gaaccctcattttttctaatttcctgtatactgagtgtaggttgtgtgct
ccttacccccagaagcttggaaatcaaaactgtttcaggttcaaggctat
ttaggttttgcatgtgtgtatatctcatctttagatgagatcatgtctag
acatggaaacctgtgttttccttctttacacctatatcaattagcaacgt
aaaa
gaattcctggtttttctttacctgtggaaataaagagtatattttctccc
ccactgcaacatttttcatttgtctctgggatttcttatccctttttatt
tattaagcatctctttcttacatctgttcctatacattgagcctttgatc
tcttttgagttctctgttttatttattgaagctgttctttttttgatatc
tgggttattaatgtttatatccagagcattgttaattaattgttctgttg
gatgagtttctccactgttgacctgagatggctgatttggattgggtatt
ggggcctctggggtcatttcttgaacaagaattaccttatctgtcccttg
ttgatctacattcattagtccagtgtcggcctttgctacaccttctgcat
attccagatagctgtggccttctgtttttggattttctgaagaaaaggca
ttgttcctaggaatgccttttctacaatctcttttaaaatgaccttgctt
gccacaatgaaaacatttagcatttaagcctttaaggattatttttctct
gttaaagttgccttcttataatttttaaaatctagtctttttatgggatg
ccatttaaattctttacatttttgtgtgtttctagcatcctctgttattc
gtagtacactaacatgatgagccaaattggttttctaaaaggctttggct
tacttgtttgattttcattatatatagtgtggtaggctttaaccttattt
cttttgtctgtaccttagtgtctttctcaactctgtaatcttttctagtt
tttcttctaatgcctgtatctggaaagtctttttaaaagaaggcataaaa
ctattatgattattatgattaggaaaatacatgtctgcataatagtaatt
ataattggtaataaagtaccagtctcaattaggccatttgtctcttctgt
ctctatctttagcaccctagatagcataataatttagtccaaaagctctg
tgttactgatttttcatctatttctttttaaatgtatttttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_121610078_121611185
seq2: B6Ng01-245K04.b_49_1152 (reverse)

seq1  TTTTACG-TGCTAATTTGAATATAGGTGTAAAAGAAGAAAAACACAGGTT  49
      ||||||| ||||||||   |||||||||| ||||||| ||||||||||||
seq2  TTTTACGTTGCTAATT--GATATAGGTGT-AAAGAAGGAAAACACAGGTT  47

seq1  T-CATGTCTAGACATGATTCTCATCTAAAGATGAGATATACACACATGCC  98
      | ||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  TCCATGTCTAGACATGA-TCTCATCTAAAGATGAGATATACACACATG-C  95

seq1  AAAACCTAAATAGCCTTGAACCCTGAAACAGTTTTGA-TTCCAAGCTTCT  147
      |||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  AAAACCTAAATAGCCTTGAA-CCTGAAACAGTTTTGATTTCCAAGCTTCT  144

seq1  -GGGGTAAGGAGCACACAACCTACACTCAGTATACAGGAAATTAGAAAAA  196
       |||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGGGGTAAGGAGCACACAACCTACACTCAGTATACAGGAAATTAG-AAAA  193

seq1  AATGAGGGTTCATTTTCTAGATTCTCTTGATTTTGTGGGATAGATATCTA  246
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AATGAGGGTTCATTTTCTAGATTCTC-TGATTTTGTGGGATAGATATCTA  242

seq1  AATAAGTCAGGGAAAGATTGAGAATATCAGGCTCTTGGCAGCCTCAAATT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTCAGGGAAAGATTGAGAATATCAGGCTCTTGGCAGCCTCAAATT  292

seq1  CCTTGTTATGTTGTCAACAGCTTCTCCTAAAGACTGAAATATTTATTCCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTATGTTGTCAACAGCTTCTCCTAAAGACTGAAATATTTATTCCC  342

seq1  CCAAGGGCTAGGAAATTTGTTCAATTGTTTGTCTCAGCAGGGAGTGCTGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGCTAGGAAATTTGTTCAATTGTTTGTCTCAGCAGGGAGTGCTGC  392

seq1  CCTGAAATTGTTGAATTTTTTAAAAGGAGTCTTTCTCAAAAAGCTGATAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAATTGTTGAATTTTTTAAAAGGAGTCTTTCTCAAAAAGCTGATAC  442

seq1  TTCCTTTCTAGTGAACAGCACATTAAATGGCTTACCGATATGGAGTTACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCTAGTGAACAGCACATTAAATGGCTTACCGATATGGAGTTACA  492

seq1  GAATCTAGAGCCTTCACAAAATCAGCGCAACTTGGAAACAATGTCTTAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTAGAGCCTTCACAAAATCAGCGCAACTTGGAAACAATGTCTTAAC  542

seq1  CATTCCATTTTGGCTTCTAGTAAGTTTCAAAAGATGATTACAAAAACTTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCATTTTGGCTTCTAGTAAGTTTCAAAAGATGATTACAAAAACTTG  592

seq1  TCCAAGTGTTTTTAATTCTTGCCTTATATGAAATGATGCTTTAAAAATAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTGTTTTTAATTCTTGCCTTATATGAAATGATGCTTTAAAAATAA  642

seq1  TGCTATGTTTTTGAGACATTGGAAAGAGCTTTAGGGTTCTATCAGCCATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGTTTTTGAGACATTGGAAAGAGCTTTAGGGTTCTATCAGCCATT  692

seq1  GTTTAAAGTGTCAGCCTTCGCCTAGATACATAAGTGGTGTTTGACCAAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAGTGTCAGCCTTCGCCTAGATACATAAGTGGTGTTTGACCAAGA  742

seq1  AAACTCCTGAGTGCGGTTAGAAGAAATATGAGTACATATTGAGGGTTAAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCTGAGTGCGGTTAGAAGAAATATGAGTACATATTGAGGGTTAAC  792

seq1  ATTTGGAGGATTGTACTTGATGTGGCAAAGATTTAACTTCACAGTATTTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAGGATTGTACTTGATGTGGCAAAGATTTAACTTCACAGTATTTC  842

seq1  ATTTGCTTCTCTGGGGACAGCCACTGGTTCTGGGAATGGTATATAAACAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTCTCTGGGGACAGCCACTGGTTCTGGGAATGGTATATAAACAA  892

seq1  GTCTAAAGCAGCCAATTTGTAATTTTTGAATGGATTTATACAACATTATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAAGCAGCCAATTTGTAATTTTTGAATGGATTTATACAACATTATG  942

seq1  CAAATTGTATGTCTGAAAATTGTGAAAAATAATGTTACAAAACCTTACAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGTATGTCTGAAAATTGTGAAAAATAATGTTACAAAACCTTACAA  992

seq1  ATATGTAAATTATAAATATTAGTCAGAAGGGTGAGTGCTGTCATTACTTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAAATTATAAATATTAGTCAGAAGGGTGAGTGCTGTCATTACTTT  1042

seq1  CTGCTATATCTAGGACAGTCAGAAGGCAATCCATATAGAATGTATTCGTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATATCTAGGACAGTCAGAAGGCAATCCATATAGAATGTATTCGTT  1092

seq1  GTGGTTGAATTC  1108
      ||||||||||||
seq2  GTGGTTGAATTC  1104

seq1: chr7_121484410_121485461
seq2: B6Ng01-245K04.g_65_1109

seq1  GAATTCCTGGTTTTTCTTTACCTGTGGAAATAAAGAGTATATTTTCTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTTTTTCTTTACCTGTGGAAATAAAGAGTATATTTTCTCCC  50

seq1  CCACTGCAACATTTTTCATTTGTCTCTGGGATTTCTTATCCCTTTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCAACATTTTTCATTTGTCTCTGGGATTTCTTATCCCTTTTTATT  100

seq1  TATTAAGCATCTCTTTCTTACATCTGTTCCTATACATTGAGCCTTTGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGCATCTCTTTCTTACATCTGTTCCTATACATTGAGCCTTTGATC  150

seq1  TCTTTTGAGTTCTCTGTTTTATTTATTGAAGCTGTTCTTTTTTTGATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGAGTTCTCTGTTTTATTTATTGAAGCTGTTCTTTTTTTGATATC  200

seq1  TGGGTTATTAATGTTTATATCCAGAGCATTGTTAATTAATTGTTCTGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTATTAATGTTTATATCCAGAGCATTGTTAATTAATTGTTCTGTTG  250

seq1  GATGAGTTTCTCCACTGTTGACCTGAGATGGCTGATTTGGATTGGGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTTTCTCCACTGTTGACCTGAGATGGCTGATTTGGATTGGGTATT  300

seq1  GGGGCCTCTGGGGTCATTTCTTGAACAAGAATTACCTTATCTGTCCCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTCTGGGGTCATTTCTTGAACAAGAATTACCTTATCTGTCCCTTG  350

seq1  TTGATCTACATTCATTAGTCCAGTGTCGGCCTTTGCTACACCTTCTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTACATTCATTAGTCCAGTGTCGGCCTTTGCTACACCTTCTGCAT  400

seq1  ATTCCAGATAGCTGTGGCCTTCTGTTTTTGGATTTTCTGAAGAAAAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGATAGCTGTGGCCTTCTGTTTTTGGATTTTCTGAAGAAAAGGCA  450

seq1  TTGTTCCTAGGAATGCCTTTTCTACAATCTCTTTTAAAATGACCTTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCTAGGAATGCCTTTTCTACAATCTCTTTTAAAATGACCTTGCTT  500

seq1  GCCACAATGAAAACATTTAGCATTTAAGCCTTTAAGGATTATTTTTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAATGAAAACATTTAGCATTTAAGCCTTTAAGGATTATTTTTCTCT  550

seq1  GTTAAAGTTGCCTTCTTATAATTTTTAAAATCTAGTCTTTTTATGGGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGTTGCCTTCTTATAATTTTTAAAATCTAGTCTTTTTATGGGATG  600

seq1  CCATTTAAATTCTTTACATTTTTGTGTGTTTCTAGCATCCTCTGTTATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAAATTCTTTACATTTTTGTGTGTTTCTAGCATCCTCTGTTATTC  650

seq1  GTAGTACACTAACATGATGAGCCAAATTGGTTTTCTAAAAGGCTTTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTACACTAACATGATGAGCCAAATTGGTTTTCTAAAAGGCTTTGGCT  700

seq1  TACTTGTTTGATTTTCATTATATATAGTGTGGTAGGCTTTAACCTTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTTTGATTTTCATTATATATAGTGTGGTAGGCTTTAACCTTATTT  750

seq1  CTTTTGTCTGTACCTTAGTGTCTTTCTCAACTCTGTAATCTTTTCTAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTCTGTACCTTAGTGTCTTTCTCAACTCTGTAATCTTTTCTAGTT  800

seq1  TTTCTTCTAATGCCTGTATCTGGAAAGTCTTTTTAAAAGAAGGCATAAAA  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTCTTCTAATGCCTGTATCTGGAAAGTCTTTTTAAAAGAAGGCAT-AAA  849

seq1  ACTATTATGATTATTATGATTAGGAAAATACATGTCTGCATAATAGTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTATGATTATTATGATTAGGAAAATACATGTCTGCATAATAGTAAT  899

seq1  TATAATTGGTAATAAAGTACCAGTCTCAATTAGGCCATTTGTCTCTTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTGGTAATAAAGTACCAGTCTCAATTAGGCCATTTGTCTCTTCTG  949

seq1  TCTCTATCTTTAAGCACCCTAAGATAGCATTAAATAATTTAGTCCAAAAG  1000
      ||||||||||| |||||||| |||||||||  ||||||||||||||||||
seq2  TCTCTATCTTT-AGCACCCT-AGATAGCAT--AATAATTTAGTCCAAAAG  995

seq1  CTCTGTGTTACTGATTTTTCATCTTATTTCTTTTTTAAATGTATTTTTAA  1050
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  CTCTGTGTTACTGATTTTTCATC-TATTTC-TTTTTAAATGTATTTTTAA  1043

seq1  AA  1052
      ||
seq2  AA  1045