BAC Information

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BAC

Clone NameB6Ng01-245L18
Chromosome7 (Build37)
Map Location 89,907,251 - 89,908,378
singlet/doubletsinglet
Overlap geneEftud1
Upstream gene2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3, Adamtsl3, 1700129I04Rik
Downstream geneLOC100038986, LOC619808, Rkhd3, LOC619909, A530021J07Rik, EG666160, Tmc3, Stard5, Il16, Phgdh-ps1, LOC666170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245L18.bB6Ng01-245L18.g
ACCGA054544GA054545
length1,1941,125
definitionB6Ng01-245L18.b B6Ng01-245L18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaagattttttgtgaatgatagtttctgaatcagattctgtatc
cagaaaaccttctgtttcaatgtcattcatttgtaatgttaattttggcc
tctgatcattaacaactgcttgccagaacacatgttttccaatatttata
aaccaccctgatctttctgttgaagcagcttagcctttgataaagggaaa
cagtagcagctaagcaatcctatcacctgtgttaagtttcatatatttta
cataagccattatcttaatttctcctttgaaatcttcattataagatttc
tggatgcacaataaatccttgggaagtcaaacttctcaaaatcattcatt
cctacaaccctgagggcaaaggaccataaactccattttataacactgaa
cttttgggtatagtgtaaaatgtttatctaagaccaagtctagagcatca
ttgcctgtagctgcatgcattaggtctgcaatacttagttgaggttttct
gcttgcttgttattttctggcttacaagaggaaaatggttcatacatttt
gttgcagggcttcaaggtagctacccacccccatcattctggacagcaag
aaattgcattagacctttctcttggatctacatccatgggtccaatggca
aatcttgcaacatcatttgcatattcttgaaagcctgagccttctttatg
atttatatttagaaaaactattgcctttagatataccctgttcacaattt
tatttcaaatgtccatatttcccacaattaaaacaccaggcattttgata
tctgagagttttacttttgcttgacctcttatattagaatgttttatggt
agaatcaatatcattcatactctttatccatccatccatgggtactgccc
attccttcagtgatcttatgctgttttacactgtgcattcacatttttcg
aatgctagggtctctatcaacacctgtcttttcgtcggggtcaatatggt
cttattttactgcctgaaatgaatcttttgtttaaaaaaaaattcggaaa
gcttctacagagctgtgtatttttgtaaatttatgtgatttctcttcttg
ccccaaccttcctctcagctcttcaagctgctaattgaccttcctagatc
atatcttctatggtactgttctggtatatcacaccaataaatta
gaattcttgtaggttttgtaaagagacttatttttgttaggttcaataaa
cacgtcaggtaaggaggcagatcaggcgaatgtcttgtagcagagaaacc
ttcaaatggcccaagaggtaaatctgtcagttaattgttggagggcaggt
gagtcagaagagaacgaaattaccaaaagagaaagaaaaacaaaacaaaa
caaaacaaaacaaaacaaaacaaaacaaaactgtgtcttccagccttatc
tcagataagtccctaaggctgtgctggacataaatctaaatgtgtctttg
tctaattatactgttaattttttttaaatttgcaggtttaaaaaaggttt
ttattttttatttatatgtatgtatatatgtatactgtatgagtttatgt
gcatcatgcatgtgaaggtgaccacagagaccagagagtgcaggattcct
ggagctatgggccgcctaaggtggatgctaggtctggaatctgggtcctt
tgcaagagcagtaactgttgagccatcccttcagtaagcataagggcccg
agttccccagagcccatgtgaaaaaagccaatgtgctggtttgtgccagc
agtctccgtgttgaggggaagagacagccaggttcctggggctcgctgta
gtaagcctagttagctgggttgctcagtatctgaggaatgacctctacct
aaggcctccacacacacctacaagcatatgtacatgcatctcctgacaca
catatgcatataagataataatacagaagcacggacactaaaggaaacag
ataaataggaacagcacaggaatgggaaaatagtttttaaattacagaga
atattggcttaggtactttaaggaagccaactacaaagctattaaaactg
agaaaatacatccataccattatattgttaccttttattataaagtaaca
aaaaaagcttatgcactactttgaatgtctgaggttccaagaagtctgct
atagaaattgctcaaacatttaaagtcatttcatgctgtggagggaagtg
tgcagctgccaatctattctgtactagagcagaagctttgtaatcatagc
cattgcagagctgctgtgcttataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_89907251_89908378
seq2: B6Ng01-245L18.g_67_1191 (reverse)

seq1  TTATAAGCAACAGCAGGCTCTGC-ATTGCTATGATTTACAAAGCTTCTGC  49
      |||||||| |||||| ||||||| || ||||||| |||||||||||||||
seq2  TTATAAGC-ACAGCA-GCTCTGCAATGGCTATGA-TTACAAAGCTTCTGC  47

seq1  TCTTGGTACCAGATAGATTTGGCAGCTGCACACTTCCCTCCACAGCATGA  99
      || | ||||   ||||| ||||||||||||||||||||||||||||||||
seq2  TC-TAGTACAGAATAGA-TTGGCAGCTGCACACTTCCCTCCACAGCATGA  95

seq1  AATGACTTTAATTGTTTGAGCAATTTCTATAGCAGACTTCTTGGAACCTC  149
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AATGACTTTAAATGTTTGAGCAATTTCTATAGCAGACTTCTTGGAACCTC  145

seq1  AGACATTCAAAGTAGTGCAT-AGCTTTTTTTGTTACTTTATAATAAAAGG  198
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGACATTCAAAGTAGTGCATAAGCTTTTTTTGTTACTTTATAATAAAAGG  195

seq1  TAACAATATAATGGTATGGATGTATTTTCTCAGTTTTAATAGCTTTGTAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATATAATGGTATGGATGTATTTTCTCAGTTTTAATAGCTTTGTAG  245

seq1  TTGGCTTCCTTAAAGTACCTAAGCCAATATTCTCTGTAATTTAAAAACTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTCCTTAAAGTACCTAAGCCAATATTCTCTGTAATTTAAAAACTA  295

seq1  TTTTCCCATTCCTGTGCTGTTCCTATTTATCTGTTTCCTTTAGTGTCCGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCATTCCTGTGCTGTTCCTATTTATCTGTTTCCTTTAGTGTCCGT  345

seq1  GCTTCTGTATTATTATCTTATATGCATATGTGTGTCAGGAGATGCATGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTATTATTATCTTATATGCATATGTGTGTCAGGAGATGCATGTA  395

seq1  CATATGCTTGTAGGTGTGTGTGGAGGCCTTAGGTAGAGGTCATTCCTCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCTTGTAGGTGTGTGTGGAGGCCTTAGGTAGAGGTCATTCCTCAG  445

seq1  ATACTGAGCAACCCAGCTAACTAGGCTTACTACAGCGAGCCCCAGGAACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAGCAACCCAGCTAACTAGGCTTACTACAGCGAGCCCCAGGAACC  495

seq1  TGGCTGTCTCTTCCCCTCAACACGGAGACTGCTGGCACAAACCAGCACAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCTCTTCCCCTCAACACGGAGACTGCTGGCACAAACCAGCACAT  545

seq1  TGGCTTTTTTCACATGGGCTCTGGGGAACTCGGGCCCTTATGCTTACTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTTTCACATGGGCTCTGGGGAACTCGGGCCCTTATGCTTACTGA  595

seq1  AGGGATGGCTCAACAGTTACTGCTCTTGCAAAGGACCCAGATTCCAGACC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGGCTCAACAGTTACTGCTCTTGCAAAGGACCCAGATTCCAGACC  645

seq1  TAGCATCCACCTTAGGCGGCCCATAGCTCCAGGAATCCTGCACTCTCTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCCACCTTAGGCGGCCCATAGCTCCAGGAATCCTGCACTCTCTGG  695

seq1  TCTCTGTGGTCACCTTCACATGCATGATGCACATAAACTCATACAGTATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGGTCACCTTCACATGCATGATGCACATAAACTCATACAGTATA  745

seq1  CATATATACATACATATAAATAAAAAATAAAAACCTTTTTTAAACCTGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATACATACATATAAATAAAAAATAAAAACCTTTTTTAAACCTGCA  795

seq1  AATTTAAAAAAAATTAACAGTATAATTAGACAAAGACACATTTAGATTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAAAAAATTAACAGTATAATTAGACAAAGACACATTTAGATTTA  845

seq1  TGTCCAGCACAGCCTTAGGGACTTATCTGAGATAAGGCTGGAAGACACAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGCACAGCCTTAGGGACTTATCTGAGATAAGGCTGGAAGACACAG  895

seq1  TTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTCTTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTCTTTC  945

seq1  TCTTTTGGTAATTTCGTTCTCTTCTGACTCACCTGCCCTCCAACAATTAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGTAATTTCGTTCTCTTCTGACTCACCTGCCCTCCAACAATTAA  995

seq1  CTGACAGATTTACCTCTTGGGCCATTTGAAGGTTTCTCTGCTACAAGACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGATTTACCTCTTGGGCCATTTGAAGGTTTCTCTGCTACAAGACA  1045

seq1  TTCGCCTGATCTGCCTCCTTACCTGACGTGTTTATTGAACCTAACAAAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCCTGATCTGCCTCCTTACCTGACGTGTTTATTGAACCTAACAAAAA  1095

seq1  TAAGTCTCTTTACAAAACCTACAAGAATTC  1128
      ||||||||||||||||||||||||||||||
seq2  TAAGTCTCTTTACAAAACCTACAAGAATTC  1125