BAC Information

Click to search

BAC

Clone NameB6Ng01-245M20
Chromosome7 (Build37)
Map Location 133,809,294 - 133,925,420
singlet/doubletdoublet
Overlap geneCcdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6
Upstream geneGtf3c1, D430042O09Rik, Gsg1l, Xpo6, Sbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1
Downstream genePpp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245M20.bB6Ng01-245M20.g
ACCGA054592GA054593
length9421,058
definitionB6Ng01-245M20.b B6Ng01-245M20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,809,294 - 133,810,227)(133,924,375 - 133,925,420)
sequence
gaattctgctaggtgctgagcaggtcctctacggcacacttactttttat
tttattttattttattttatttttttgagatttatttattatgtatttta
tgcatatgaatacaccaccactgctctcttcagacacaccagaagagggc
atcagaccccattacagatggttgtgagccaccatgtggttgctgggaat
tgaactcaggacctctggaagagcagttggtgctcttaactgctgaacca
tctctccagatccatacttatttttaaatgaacgcatctcatcggattct
gacagaagttacagctaatgtggcattatgtgtagccaattctctttact
atttttttttaagacagggacagggtttctctgtgtagccctggttgtct
tggaacttattctgtaggtcaggctggcctcaaacttagaaactcacctc
cctttgcctcctgagtgctgggattaaaggcatatgccacctctgccagg
ctttctactttttaaagcaggttgtagccagaaaattaactttaagcctt
cctaagaagtgtttgcctgatgttttttagtgatgactgcattttgagga
ccctaaggatgccagctatgagataagaactagagtagccctacatggct
cagttcataagggcttcctatatctcaggcctcacttcagaggcctcagg
aaaccaataaagcctaaagctgcaataaaaagaaagggttggggcggggt
tcaaggccagttaagaccaaatcccaaggtggtaataagtgagtgggaca
ttggtagaagagtagcaagaaaaggctggctcagagcagcagtctttgga
ggttcactaggagctggtttacagatgggaagatcagtttgctcgacgtt
tctggtgttgtatggaaggggatctgaccagcttcctccatg
gaattccttccacagttcctggttctccaagctcaggctgaccccaggaa
gcgagtgaagggcctctgggggtggcggtgctgtctcggggcccagagca
gatgggagaaggggcaaaggagcggctgcagccagagtgtggggagctgc
ctcgatcccagagaggaagcaatccagtttagaagtatccaaatctggag
atgtgggaagaatgaggatccaggggagggccacatattcccagtttcct
gccccttacccagagccaatccaaccgctcaccagggtagcggtaaccct
ctgtcagggcaggtgggaaggtggagtctgccccaggctgggggtgtccc
agacggtagccagtccccagggaggggtacaactctcgtggatggtacat
gttgtagtttcttctggccttgtgtcccgttgctagaatccggggtctaa
gggatgccccctttatagctcacagcacagccccttccaaaccagagatc
acagcccctcccctccttggggccctggaggtgggctggaatggagaccc
ctggggcctagaaggggtccaagaggaggccggatacctgggtaccctcc
cctctccctcgcagcttcactagtcccgaccccctaccccctcattacat
aattaactcctcggtctgattgatccctagggctaagacagggacgcagt
ttggcgcttccggccagctggtctccgttcccacggtgggggcagaccgg
ctagggggcaggggtgggatctggatcctggcaccgagcctaggatcccg
ggttagaccctaaagccccagacttttctggaaggtgaccccctcccttt
tttttcacttgggaggactagccttgcgaagtgaacgcgaggaccaagtt
gcaggggttgatgtctgagcctgatacgccagacactgggcatcttcaga
gaaccggaggtcagaggacttaagtcctagagtccttccttggtttatag
tctgaaaggctcctcaagtctcaaaagttgaaggggcgtgcacagtacac
atctatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_133809294_133810227
seq2: B6Ng01-245M20.b_47_988

seq1  GAATTCTGCTAGGTGCTGAGCAGGTCCTCTACGGCACACTTACTTTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTAGGTGCTGAGCAGGTCCTCTACGGCACACTTACTTTTTAT  50

seq1  TTTATTTTATTTTATTTTATTTTTTTGAGATTTATTTATTATGTATTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTATTTTATTTTATTTTTTTGAGATTTATTTATTATGTATTTTA  100

seq1  TGCATATGAATACACCACCACTGCTCTCTTCAGACACACCAGAAGAGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATGAATACACCACCACTGCTCTCTTCAGACACACCAGAAGAGGGC  150

seq1  ATCAGACCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAAT  200

seq1  TGAACTCAGGACCTCTGGAAGAGCAGTTGGTGCTCTTAACTGCTGAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAGGACCTCTGGAAGAGCAGTTGGTGCTCTTAACTGCTGAACCA  250

seq1  TCTCTCCAGATCCATACTTATTTTTAAATGAACGCATCTCATCGGATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCAGATCCATACTTATTTTTAAATGAACGCATCTCATCGGATTCT  300

seq1  GACAGAAGTTACAGCTAATGTGGCATTATGTGTAGCCAATTCTCTTTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGTTACAGCTAATGTGGCATTATGTGTAGCCAATTCTCTTTACT  350

seq1  ATTTTTTTTTAAGACAGGGACAGGGTTTCTCTGTGTAGCCCTGGTTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTAAGACAGGGACAGGGTTTCTCTGTGTAGCCCTGGTTGTCT  400

seq1  TGGAACTTATTCTGTAGGTCAGGCTGGCCTCAAACTTAGAAACTCACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTTATTCTGTAGGTCAGGCTGGCCTCAAACTTAGAAACTCACCTC  450

seq1  CCTTTGCCTCCTGAGTGCTGGGATTAAAGGCATATGCCACCTCTGCCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCCTCCTGAGTGCTGGGATTAAAGGCATATGCCACCTCTGCCAGG  500

seq1  CTTTCTACTTTTTAAAGCAGGTTGTAGCCAGAAAATTAACTTTAAGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTACTTTTTAAAGCAGGTTGTAGCCAGAAAATTAACTTTAAGCCTT  550

seq1  CCTAAGAAGTGTTTGCCTGATGTTTTTTAGTGATGACTGCATTTTGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAAGTGTTTGCCTGATGTTTTTTAGTGATGACTGCATTTTGAGGA  600

seq1  CCCTAAGGATGCCAGCTATGAGATAAGAACTAGAGTAGCCCTACATGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGGATGCCAGCTATGAGATAAGAACTAGAGTAGCCCTACATGGCT  650

seq1  CAGTTCATAAGGGCTTCCTATATCTCAGGCCTCACTTCAGAGGCCTCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCATAAGGGCTTCCTATATCTCAGGCCTCACTTCAGAGGCCTCAGG  700

seq1  AAACCAATAAAGCCTAAAGCTGCAATAAAAAG-AAGGGTTGGGGCGGGGT  749
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAACCAATAAAGCCTAAAGCTGCAATAAAAAGAAAGGGTTGGGGCGGGGT  750

seq1  TCAAGGCCAGTTAAGACCAAA-CCCAAGGTGGTAATAAGTGAGTGGGACA  798
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCAAGGCCAGTTAAGACCAAATCCCAAGGTGGTAATAAGTGAGTGGGACA  800

seq1  -TGGTAGAAGAGTAGCAAGAAAAGGCTGGCTCAGGAGCAGCAGTC-TTGG  846
       |||||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  TTGGTAGAAGAGTAGCAAGAAAAGGCTGGCTCA-GAGCAGCAGTCTTTGG  849

seq1  AGGTTCACTAGGGAGCTGGTTTACAGATGGGAAGATCAGGTTGC-CGACG  895
      |||||||||| |||||||||||||||||||||||||||| |||| |||||
seq2  AGGTTCACTA-GGAGCTGGTTTACAGATGGGAAGATCAGTTTGCTCGACG  898

seq1  TTTCTGGTG-TGTATGGA--GGGATCTGACAGGCT--CTCCATG  934
      ||||||||| ||||||||  ||||||||||  |||  |||||||
seq2  TTTCTGGTGTTGTATGGAAGGGGATCTGACCAGCTTCCTCCATG  942

seq1: chr7_133924375_133925420
seq2: B6Ng01-245M20.g_69_1126 (reverse)

seq1  CCATAGATGTGTAACTGTGCACGCCCC-TCAACTTTTGAGACTTG-GAGG  48
      |||||||||||| |||||||||||||| ||||||||||||||||| |  |
seq2  CCATAGATGTGT-ACTGTGCACGCCCCTTCAACTTTTGAGACTTGAGGAG  49

seq1  CTTTTCAGACTATAAACC-AGGGAGGACTCTAGG-CTTTAGTCCTCTG-C  95
      | |||||||||||||||| ||| ||||||||||| ||| ||||||||| |
seq2  CCTTTCAGACTATAAACCAAGGAAGGACTCTAGGACTTAAGTCCTCTGAC  99

seq1  CTCGGTCTCT-TGAAGATGCCCAGTGTCTGGCGTATCA-GCTCAGACATC  143
      ||| |  ||| ||||||||||||||||||||||||||| |||||||||||
seq2  CTCCGGTTCTCTGAAGATGCCCAGTGTCTGGCGTATCAGGCTCAGACATC  149

seq1  AA-CCCTGC-ACTT-GTCCTCGCGTTCACTTCGCAAGGCTAGTCCT-CCA  189
      || |||||| |||| ||||||||||||||||||||||||||||||| |||
seq2  AACCCCTGCAACTTGGTCCTCGCGTTCACTTCGCAAGGCTAGTCCTCCCA  199

seq1  AGTG-AAAAAAAGGGAGGGGGTCACCTTCCAG-AAAGTCTGGGGCTTTAG  237
      |||| ||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGTGAAAAAAAAGGGAGGGGGTCACCTTCCAGAAAAGTCTGGGGCTTTAG  249

seq1  GGTCTAACCCGGGATCCTAGGCTCGGTGCCAGGATCCAGATCCCACCCCT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAACCCGGGATCCTAGGCTCGGTGCCAGGATCCAGATCCCACCCCT  299

seq1  GCCCCCTAGCCGGTCTGCCCCCACCGTGGGAACGGAGACCAGCTGGCCGG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCTAGCCGGTCTGCCCCCACCGTGGGAACGGAGACCAGCTGGCCGG  349

seq1  AAGCGCCAAACTGCGTCCCTGTCTTAGCCCTAGGGATCAATCAGACCGAG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGCCAAACTGCGTCCCTGTCTTAGCCCTAGGGATCAATCAGACCGAG  399

seq1  GAGTTAATTATGTAATGAGGGGGTAGGGGGTCGGGACTAGTGAAGCTGCG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAATTATGTAATGAGGGGGTAGGGGGTCGGGACTAGTGAAGCTGCG  449

seq1  AGGGAGAGGGGAGGGTACCCAGGTATCCGGCCTCCTCTTGGACCCCTTCT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGGGGAGGGTACCCAGGTATCCGGCCTCCTCTTGGACCCCTTCT  499

seq1  AGGCCCCAGGGGTCTCCATTCCAGCCCACCTCCAGGGCCCCAAGGAGGGG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCAGGGGTCTCCATTCCAGCCCACCTCCAGGGCCCCAAGGAGGGG  549

seq1  AGGGGCTGTGATCTCTGGTTTGGAAGGGGCTGTGCTGTGAGCTATAAAGG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGTGATCTCTGGTTTGGAAGGGGCTGTGCTGTGAGCTATAAAGG  599

seq1  GGGCATCCCTTAGACCCCGGATTCTAGCAACGGGACACAAGGCCAGAAGA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCCCTTAGACCCCGGATTCTAGCAACGGGACACAAGGCCAGAAGA  649

seq1  AACTACAACATGTACCATCCACGAGAGTTGTACCCCTCCCTGGGGACTGG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACAACATGTACCATCCACGAGAGTTGTACCCCTCCCTGGGGACTGG  699

seq1  CTACCGTCTGGGACACCCCCAGCCTGGGGCAGACTCCACCTTCCCACCTG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCGTCTGGGACACCCCCAGCCTGGGGCAGACTCCACCTTCCCACCTG  749

seq1  CCCTGACAGAGGGTTACCGCTACCCTGGTGAGCGGTTGGATTGGCTCTGG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACAGAGGGTTACCGCTACCCTGGTGAGCGGTTGGATTGGCTCTGG  799

seq1  GTAAGGGGCAGGAAACTGGGAATATGTGGCCCTCCCCTGGATCCTCATTC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGGCAGGAAACTGGGAATATGTGGCCCTCCCCTGGATCCTCATTC  849

seq1  TTCCCACATCTCCAGATTTGGATACTTCTAAACTGGATTGCTTCCTCTCT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACATCTCCAGATTTGGATACTTCTAAACTGGATTGCTTCCTCTCT  899

seq1  GGGATCGAGGCAGCTCCCCACACTCTGGCTGCAGCCGCTCCTTTGCCCCT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCGAGGCAGCTCCCCACACTCTGGCTGCAGCCGCTCCTTTGCCCCT  949

seq1  TCTCCCATCTGCTCTGGGCCCCGAGACAGCACCGCCACCCCCAGAGGCCC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCATCTGCTCTGGGCCCCGAGACAGCACCGCCACCCCCAGAGGCCC  999

seq1  TTCACTCGCTTCCTGGGGTCAGCCTGAGCTTGGAGAACCAGGAACTGTGG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCGCTTCCTGGGGTCAGCCTGAGCTTGGAGAACCAGGAACTGTGG  1049

seq1  AAGGAATTC  1046
      |||||||||
seq2  AAGGAATTC  1058