BAC Information

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BAC

Clone NameB6Ng01-246H09
Chromosome7 (Build37)
Map Location 109,474,769 - 109,628,101
singlet/doubletdoublet
Overlap geneStim1, Rrm1, Olfr543
Upstream geneStard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog
Downstream geneOlfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246H09.bB6Ng01-246H09.g
ACCGA055070GA055071
length919540
definitionB6Ng01-246H09.b B6Ng01-246H09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,474,769 - 109,475,681)(109,627,556 - 109,628,101)
sequence
gaattcagaaagataattctaggtaatagcaagagtatattcaaagacct
aaagagtaggacttaagaactagacatgtccatggcagttcatatattca
gcatctttatagctgctttatatcatgctctggggacataaaaatcaatc
agatgtggttcctacccatcctggagaaactctgtcaggagtaatgatgt
cattcttggtaaccatggtgctaaggtcaccctagatcttgggctcagat
tcctgggtcccatgtgacaggacttaacacctttagaaactgcctgccct
tgagtgtttaccccacctgtcaatcacagaggaaatgagtctaagctgaa
aacttgcagcatttgtttttatccttggattcataaccaccagatccttg
attgctaggactctgctagagaatgtttaagatccttattagtattttga
aatcttaaccctagtgtgatgttatagggtggggcctttggtagatggtt
aggttgtgaagactgatctctatgaatgtgattgcctctataactgcgac
ttcagagagcatccctgcttcctctgccgtgggagagcatagtaaagaag
gcagttatcccctaacctagaaacggaccccacaggggaccaaacatgtc
agctccatgattttggacctctggcttctagaactgtgagaagtaaatat
ttatttttttaaagttggggtttatggtatttttagtacagcaatgtaaa
tgactaagacagattgtatccaagaaggaggtaacaaatatgtgacttgg
taattgagtccgggaggagagcctgcggtagtttagaggcacaaaccaga
aaaaacctttttatgtcattagtagacatttaacttttatcctgagctgg
cccagtgggtgggtgcatg
tctctgctgtgagggtttgttaaaaggcatgcctcttctggtatccagag
ggagtgtggtcatgcccaggcaagccctggctgagagggaggagagcatc
cctgaattgctccacagttcccgaggcttctctgatcttcagggttgata
gcatttctgcagtgaggtggctagttgctgaggatgcctggccatagctc
agattctaaaacccagcaagacccaggcaaaccacaacaaggtgcaaacc
ctaaactcgtgagaaaagagcactctgtagtgactacccagatgcgagcc
cagctcagttatttatgagctgtgtgactttgaactagactttagcccct
ccatgtcttggtttccttcttagtaaaattactttttttttatttcattt
tatttttagacagggcctcattatgtagccttggctgacctgtaactcac
tatctacaggctagtctaaacacacagagatctggatctaaaggcatata
acacaacattaataaaaatgaagatggggggggggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_109474769_109475681
seq2: B6Ng01-246H09.b_46_964

seq1  GAATTCAGAAAGATAATTCTAGGTAATAGCAAGAGTATATTCAAAGACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAGATAATTCTAGGTAATAGCAAGAGTATATTCAAAGACCT  50

seq1  AAAGAGTAGGACTTAAGAACTAGACATGTCCATGGCAGTTCATATATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTAGGACTTAAGAACTAGACATGTCCATGGCAGTTCATATATTCA  100

seq1  GCATCTTTATAGCTGCTTTATATCATGCTCTGGGGACATAAAAATCAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTTATAGCTGCTTTATATCATGCTCTGGGGACATAAAAATCAATC  150

seq1  AGATGTGGTTCCTACCCATCCTGGAGAAACTCTGTCAGGAGTAATGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGGTTCCTACCCATCCTGGAGAAACTCTGTCAGGAGTAATGATGT  200

seq1  CATTCTTGGTAACCATGGTGCTAAGGTCACCCTAGATCTTGGGCTCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTGGTAACCATGGTGCTAAGGTCACCCTAGATCTTGGGCTCAGAT  250

seq1  TCCTGGGTCCCATGTGACAGGACTTAACACCTTTAGAAACTGCCTGCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGTCCCATGTGACAGGACTTAACACCTTTAGAAACTGCCTGCCCT  300

seq1  TGAGTGTTTACCCCACCTGTCAATCACAGAGGAAATGAGTCTAAGCTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTTTACCCCACCTGTCAATCACAGAGGAAATGAGTCTAAGCTGAA  350

seq1  AACTTGCAGCATTTGTTTTTATCCTTGGATTCATAACCACCAGATCCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCAGCATTTGTTTTTATCCTTGGATTCATAACCACCAGATCCTTG  400

seq1  ATTGCTAGGACTCTGCTAGAGAATGTTTAAGATCCTTATTAGTATTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTAGGACTCTGCTAGAGAATGTTTAAGATCCTTATTAGTATTTTGA  450

seq1  AATCTTAACCCTAGTGTGATGTTATAGGGTGGGGCCTTTGGTAGATGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAACCCTAGTGTGATGTTATAGGGTGGGGCCTTTGGTAGATGGTT  500

seq1  AGGTTGTGAAGACTGATCTCTATGAATGTGATTGCCTCTATAACTGCGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTGAAGACTGATCTCTATGAATGTGATTGCCTCTATAACTGCGAC  550

seq1  TTCAGAGAGCATCCCTGCTTCCTCTGCCGTGGGAGAGCATAGTAAAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGAGCATCCCTGCTTCCTCTGCCGTGGGAGAGCATAGTAAAGAAG  600

seq1  GCAGTTATCCCCTAACCTAGAAACGGACCCCACAGGGGACCAAACATGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTATCCCCTAACCTAGAAACGGACCCCACAGGGGACCAAACATGTC  650

seq1  AGCTCCATGATTTTGGACCTCTGGCTTCTAGAACTGTGAGAAGTAAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCATGATTTTGGACCTCTGGCTTCTAGAACTGTGAGAAGTAAATAT  700

seq1  TTA-TTTTTTAAAGTTGGGGTTTATGGTATTTTTAGTACAGCAATGTAAA  749
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTTAAAGTTGGGGTTTATGGTATTTTTAGTACAGCAATGTAAA  750

seq1  TGACTAAGACAGATTGTAACCAAGAAGGAGGTAACAAATATGTGACTTGG  799
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGACTAAGACAGATTGTATCCAAGAAGGAGGTAACAAATATGTGACTTGG  800

seq1  TAATTGAGTCCGGGAGGAGAGCCTGCGGTAGTTTAGAGGCACAAACCAG-  848
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAATTGAGTCCGGGAGGAGAGCCTGCGGTAGTTTAGAGGCACAAACCAGA  850

seq1  AAAAACCTTTAT-TGTCATTAGTAGACATTTAACTTTTATCCTGAGCTGG  897
      |||||||||| | |||||||||||||||||||||||||||||||||||||
seq2  AAAAACCTTTTTATGTCATTAGTAGACATTTAACTTTTATCCTGAGCTGG  900

seq1  -CCAGTGG--TGGTGCATG  913
       |||||||   ||||||||
seq2  CCCAGTGGGTGGGTGCATG  919

seq1: chr7_109627556_109628101
seq2: B6Ng01-246H09.g_70_615 (reverse)

seq1  CCTCCCCCCCCCCCCATCTTCATTTTTATTAATGTTGTGTTATATGCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCCCCCCCCATCTTCATTTTTATTAATGTTGTGTTATATGCCTT  50

seq1  TAGATCCAGATCTCTGTGTGTTTAGACTAGCCTGTAGATAGTGAGTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCAGATCTCTGTGTGTTTAGACTAGCCTGTAGATAGTGAGTTACA  100

seq1  GGTCAGCCAAGGCTACATAATGAGGCCCTGTCTAAAAATAAAATGAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGCCAAGGCTACATAATGAGGCCCTGTCTAAAAATAAAATGAAATA  150

seq1  AAAAAAAAGTAATTTTACTAAGAAGGAAACCAAGACATGGAGGGGCTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGTAATTTTACTAAGAAGGAAACCAAGACATGGAGGGGCTAAA  200

seq1  GTCTAGTTCAAAGTCACACAGCTCATAAATAACTGAGCTGGGCTCGCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGTTCAAAGTCACACAGCTCATAAATAACTGAGCTGGGCTCGCATC  250

seq1  TGGGTAGTCACTACAGAGTGCTCTTTTCTCACGAGTTTAGGGTTTGCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGTCACTACAGAGTGCTCTTTTCTCACGAGTTTAGGGTTTGCACC  300

seq1  TTGTTGTGGTTTGCCTGGGTCTTGCTGGGTTTTAGAATCTGAGCTATGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTGGTTTGCCTGGGTCTTGCTGGGTTTTAGAATCTGAGCTATGGC  350

seq1  CAGGCATCCTCAGCAACTAGCCACCTCACTGCAGAAATGCTATCAACCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATCCTCAGCAACTAGCCACCTCACTGCAGAAATGCTATCAACCCT  400

seq1  GAAGATCAGAGAAGCCTCGGGAACTGTGGAGCAATTCAGGGATGCTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATCAGAGAAGCCTCGGGAACTGTGGAGCAATTCAGGGATGCTCTCC  450

seq1  TCCCTCTCAGCCAGGGCTTGCCTGGGCATGACCACACTCCCTCTGGATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCAGCCAGGGCTTGCCTGGGCATGACCACACTCCCTCTGGATAC  500

seq1  CAGAAGAGGCATGCCTTTTAACAAACCCTCACAGCAGAGAGAATTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGGCATGCCTTTTAACAAACCCTCACAGCAGAGAGAATTC  546