BAC Information

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BAC

Clone NameB6Ng01-247O09
Chromosome7 (Build37)
Map Location 61,884,192 - 62,068,199
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668789, Mrps33p, LOC622146
Downstream geneLuzp2, LOC668796, Siglech, Tubgcp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247O09.bB6Ng01-247O09.g
ACCGA056116GA056117
length1,158948
definitionB6Ng01-247O09.b B6Ng01-247O09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,884,192 - 61,885,347)(62,067,621 - 62,068,199)
sequence
gaattctttaaaagtgatttctcctaaacctcagagaaaatgcttaaaaa
ttactggaggattgaaggcatgggacgaaagtttttcatacatgtaataa
aatatgttggtaaaatctttaatattagacttacatgcaaacactacata
agtttttatttctactattttccatgaatactattatgatttaataattt
tcccaatgaaacaacctttcatgatatgggatttctgcattttatataaa
aatatcttggattcagacataacagctcacagctatgagcccagcattta
aaggctgagtgatgtggatttttcaaaatccaaggccaacctgtgttgca
tagtaacagcttagttacatagcatcagtacatagctttagagaaaccaa
tcaatataaaattttagagcatttcataatgttatgtttcattttagtgt
tgactggactgtgagctaattttgagtccaattagcatgaagatacatga
gagaaagacagaagttggaggataaaacctatgatgatgtgttcgagatc
ttaccagaggagatcttgtctttaatgaaacatcacagcaagagaattgg
gccctgcctaaaagatattggccagcttcaaaactaatttcataattgat
aatggagatacaatactttcaaagaactaactgacctctgctgactggct
tgaacttcacatacaatgaaaaagatgtttgcttctgtgttaaacaacac
agggtaaatttaatgaagagaaacaaacaatgactgaccaagtaaagaag
aaaaacaaagcacagctggttattaacagagccaaggaaatgcaatatat
gatgtcctgtacaacgttatcaacaacactgacctgggaggaaacatgaa
acagaacactgctctacttcagagtatgcattccatgtttaaaggaaact
ggctccaacctcttggttagtgtttgacctaaagaaatagcctaatcctt
ctaactctttcaacatgtataaagttaagcttagatgatttttgcagatt
tatcatgtacttttgtaaaatcttaatgaaataaaggcatggccaattaa
agctgcttaccgagccatcaatttttttttccattttataaggtatttcg
ctcattta

gaattcaatattatattaagctaatgcatcttttgtggtcacaatattac
aatatttgaaaattaattaatcactgacagaacacaaacataaaaaatta
aacagaacatcaacaaggttttgaagaagaaataaatagcatattaaaaa
agaacctggatcaaatacagtaatacaacaaaatacaacaaaaacaataa
cacaacaaaattctaggatgtagaaaatctgaataaaagaataaaattta
gaccaataagtatatattagaacaaaaataaaaattggaaactaaataac
tttatttcagaccaaagaggagtagaaaaaaaagagaaagagagaactag
tttaaaacatagcagtggaatgaatataatctagaataaaaatcagtgaa
ataaaaagcagaaggaacatgagaagagatgatgaggcaagtgtgaagag
gtaattaagtgaaccacaggatatacaacactaacccatcccaaagacca
agtactcaataaacaaacttattaacataaaatatggtattacacttaat
atggcagatctaaagaatcctgtgagactaccatgaataatcccatgtca
acaaattgaataatttgttagaaataggtgatttcctagaatgtacaacc
tagtaaatcaaacagaaataaactacacaaacagaccaataatgatgagg
gttattgagttgttaattactttcctttcaatagagaaaaccacaggatt
atacaaatggttttctggatgaattcctttaatattaaaaaaaaattaat
gacaagtcttcttggcgcttttgttgaatagcaggaaatgccaccaaacc
tgtcttacgaggctggcattatcccaatatcaaagccagtaacaacaata
ccattttagggcaatatctttgaaaagcatagatgaataaactctcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_61884192_61885347
seq2: B6Ng01-247O09.b_49_1206

seq1  GAATTCTTTAAAAGTGATTTCTCCTAAACCTCAGAGAAAATGCTTAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAAGTGATTTCTCCTAAACCTCAGAGAAAATGCTTAAAAA  50

seq1  TTACTGGAGGATTGAAGGCATGGGACGAAAGTTTTTCATACATGTAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGAGGATTGAAGGCATGGGACGAAAGTTTTTCATACATGTAATAA  100

seq1  AATATGTTGGTAAAATCTTTAATATTAGACTTACATGCAAACACTACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTGGTAAAATCTTTAATATTAGACTTACATGCAAACACTACATA  150

seq1  AGTTTTTATTTCTACTATTTTCCATGAATACTATTATGATTTAATAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTATTTCTACTATTTTCCATGAATACTATTATGATTTAATAATTT  200

seq1  TCCCAATGAAACAACCTTTCATGATATGGGATTTCTGCATTTTATATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATGAAACAACCTTTCATGATATGGGATTTCTGCATTTTATATAAA  250

seq1  AATATCTTGGATTCAGACATAACAGCTCACAGCTATGAGCCCAGCATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTGGATTCAGACATAACAGCTCACAGCTATGAGCCCAGCATTTA  300

seq1  AAGGCTGAGTGATGTGGATTTTTCAAAATCCAAGGCCAACCTGTGTTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGAGTGATGTGGATTTTTCAAAATCCAAGGCCAACCTGTGTTGCA  350

seq1  TAGTAACAGCTTAGTTACATAGCATCAGTACATAGCTTTAGAGAAACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACAGCTTAGTTACATAGCATCAGTACATAGCTTTAGAGAAACCAA  400

seq1  TCAATATAAAATTTTAGAGCATTTCATAATGTTATGTTTCATTTTAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATAAAATTTTAGAGCATTTCATAATGTTATGTTTCATTTTAGTGT  450

seq1  TGACTGGACTGTGAGCTAATTTTGAGTCCAATTAGCATGAAGATACATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGACTGTGAGCTAATTTTGAGTCCAATTAGCATGAAGATACATGA  500

seq1  GAGAAAGACAGAAGTTGGAGGATAAAACCTATGATGATGTGTTCGAGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGACAGAAGTTGGAGGATAAAACCTATGATGATGTGTTCGAGATC  550

seq1  TTACCAGAGGAGATCTTGTCTTTAATGAAACATCACAGCAAGAGAATTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGAGGAGATCTTGTCTTTAATGAAACATCACAGCAAGAGAATTGG  600

seq1  GCCCTGCCTAAAAGATATTGGCCAGCTTCAAAACTAATTTCATAATTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCCTAAAAGATATTGGCCAGCTTCAAAACTAATTTCATAATTGAT  650

seq1  AATGGAGATACAATACTTTCAAAGAACTAACTGACCTCTGCTGACTGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGATACAATACTTTCAAAGAACTAACTGACCTCTGCTGACTGGCT  700

seq1  TGAACTTCACATACAATGAAAAAGATGTTTGCTTCTGTGTTAAACAACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTCACATACAATGAAAAAGATGTTTGCTTCTGTGTTAAACAACAC  750

seq1  AGGGTAAATTTAATGAAGAGAAACAAACAATGACTGACCAAGTAAAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAAATTTAATGAAGAGAAACAAACAATGACTGACCAAGTAAAGAAG  800

seq1  AAAAACAAAGCACAGCTGGTTATTAACAGAGCCAAGGAAATGCAATATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAGCACAGCTGGTTATTAACAGAGCCAAGGAAATGCAATATAT  850

seq1  GATGTCCTGTACAACGTTATCAACAACACTGACCTGGGAGGAAACATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCTGTACAACGTTATCAACAACACTGACCTGGGAGGAAACATGAA  900

seq1  ACAGAACACTGCTCTACTTCAGAGTATGCATTCCATGTTT-AAGGAAACT  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACAGAACACTGCTCTACTTCAGAGTATGCATTCCATGTTTAAAGGAAACT  950

seq1  GGCTCCAACCTCTTGGTTAGGTGTTTGACCTAAAGAAATAAGCCTAATCC  999
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  GGCTCCAACCTCTTGGTTA-GTGTTTGACCTAAAGAAAT-AGCCTAATCC  998

seq1  TTCTAACTCTTTCAACATGTATAAAGTTAAGCTTAGATGATTTTTGCAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACTCTTTCAACATGTATAAAGTTAAGCTTAGATGATTTTTGCAGA  1048

seq1  TTTATCATGTACTTTTGTAAAATCTTAATGAAAT-AAGGCATGG-CAATA  1097
      |||||||||||||||||||||||||||||||||| ||||||||| |||| 
seq2  TTTATCATGTACTTTTGTAAAATCTTAATGAAATAAAGGCATGGCCAATT  1098

seq1  AAGGCTGCTTAACGAG-CATCA--TTTTTTTTCCATTTTTTATTAGGTAT  1144
      || |||||||| |||| |||||  |||||||||||  |||||| ||||||
seq2  AAAGCTGCTTACCGAGCCATCAATTTTTTTTTCCA--TTTTATAAGGTAT  1146

seq1  TTCGCTCATTTA  1156
      ||||||||||||
seq2  TTCGCTCATTTA  1158


seq1: chr7_62067621_62068199
seq2: B6Ng01-247O09.g_70_648 (reverse)

seq1  AGTCTCACAGGATTCTTTAGATCTGCCATATTAAGTGTAATACCATATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCACAGGATTCTTTAGATCTGCCATATTAAGTGTAATACCATATTT  50

seq1  TATGTTAATAAGTTTGTTTATTGAGTACTTGGTCTTTGGGATGGGTTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAATAAGTTTGTTTATTGAGTACTTGGTCTTTGGGATGGGTTAGT  100

seq1  GTTGTATATCCTGTGGTTCACTTAATTACCTCTTCACACTTGCCTCATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATATCCTGTGGTTCACTTAATTACCTCTTCACACTTGCCTCATCA  150

seq1  TCTCTTCTCATGTTCCTTCTGCTTTTTATTTCACTGATTTTTATTCTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTCATGTTCCTTCTGCTTTTTATTTCACTGATTTTTATTCTAGA  200

seq1  TTATATTCATTCCACTGCTATGTTTTAAACTAGTTCTCTCTTTCTCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTCATTCCACTGCTATGTTTTAAACTAGTTCTCTCTTTCTCTTTT  250

seq1  TTTTCTACTCCTCTTTGGTCTGAAATAAAGTTATTTAGTTTCCAATTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTACTCCTCTTTGGTCTGAAATAAAGTTATTTAGTTTCCAATTTTT  300

seq1  ATTTTTGTTCTAATATATACTTATTGGTCTAAATTTTATTCTTTTATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTTCTAATATATACTTATTGGTCTAAATTTTATTCTTTTATTCA  350

seq1  GATTTTCTACATCCTAGAATTTTGTTGTGTTATTGTTTTTGTTGTATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTACATCCTAGAATTTTGTTGTGTTATTGTTTTTGTTGTATTTT  400

seq1  GTTGTATTACTGTATTTGATCCAGGTTCTTTTTTAATATGCTATTTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATTACTGTATTTGATCCAGGTTCTTTTTTAATATGCTATTTATTT  450

seq1  CTTCTTCAAAACCTTGTTGATGTTCTGTTTAATTTTTTATGTTTGTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCAAAACCTTGTTGATGTTCTGTTTAATTTTTTATGTTTGTGTTC  500

seq1  TGTCAGTGATTAATTAATTTTCAAATATTGTAATATTGTGACCACAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTGATTAATTAATTTTCAAATATTGTAATATTGTGACCACAAAAG  550

seq1  ATGCATTAGCTTAATATAATATTGAATTC  579
      |||||||||||||||||||||||||||||
seq2  ATGCATTAGCTTAATATAATATTGAATTC  579


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