BAC Information

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BAC

Clone NameB6Ng01-248G01
Chromosome7 (Build37)
Map Location 65,004,802 - 65,171,380
singlet/doubletdoublet
Overlap geneGabrb3, EG668807, LOC434189
Upstream geneGabrg3, Gabra5
Downstream geneAtp10a, LOC621446
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248G01.bB6Ng01-248G01.g
ACCGA056472GA056473
length1,0981,160
definitionB6Ng01-248G01.b B6Ng01-248G01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,004,802 - 65,005,886)(65,170,225 - 65,171,380)
sequence
gaattccatcaagaagtatcatctaaatattcctgctgaagttattgtta
aattagaaaacaatgatttttttcagtttagtgtagtgtgtcattgttaa
tatcataacttttctaacaggaacaatccaacaagttctggaaagcaccc
agaaatagacatgatgtcagagatgaaaacgcttggtgtctgaaaataac
acaattatcttagacatggcaagtctttcacaacttgtgtcaccattgat
gaaatgggcttatcttgaagagaggagatacattgaaaaaccctgatgag
gaagcccagctccaatccaagagcagggagatgtcatgagttttcccata
tgagtggtcttagtttaaagcagaaatgctcacctctagtttatcataaa
tttaaagattttttttctgcattagcattcacacacattgtctgctctct
tgtagttcaaagagaactaatgttaaccaatgctaggttaagcaaatgta
atgatgtaaacagtataactcacataacctaagtcacatccttcactatt
taacaatacacaattcagcctcatgaccagaatctacaggtgtgatgctc
aactaggtgagcagaggtgtgggtcacagagcttagtaagagctgcctgg
cctgggcagacagaagccacacttcatttgccagttgcagcagctttgct
ctattagtgaagtttctctagaaggactgagaaagatgtgacttcagtta
tgtgagtttaaacacatattcccaagcactgtggcagttttctacatcca
ttgctcagtacaccttgggagggtaatgtaatcttgaggtcattgcattt
catttttaaagcatactcattagatattatctctaggtataacacacaca
cacacacacacacacacacacacaccatagtgtgtatcttttgtagggta
tttaagtctatgtaataatgtcttcagtgactactgttcaaatgatcctc
ttttaaaaaataaaggggcaatatgtagttggagttccataggttttcca
aggcattatgcctaagaattccaattgtgcagtacctttatttttatt

gaattctttgacatttcatatagattgctcccagtagagtccgttattaa
aaaatttagtaatattttgagactccattttagattggtctgtcatgttc
cttatatttctgtattgggttttgcacaactgcagttaaacagttgtttg
tatttctattgttttctctttaacttcttgtgtatgagggtttagtgtgc
atacatttctggacccacatacatctgtgatgcattaggagtacagaaga
gaacatcagatttgctcggactggagttacagatgggtgtgagccttcac
atgtgttcagagaatcaaaccctagcagtcagttttcataagcactaagt
atttatccacccccttatatttttaaaggtcactgatattctttcattgg
aaatattttcagggttgaagtttgctatccagctctatgtagagaatgga
acattagctagagaagtgaccataataaatgggtaggccatttataaata
tatggtaatagtcaattataagctaaattttcttttaactctaataattt
gggttggggaaataaagtaataagtatcatagaatgttctaagatatttg
ttagtaaggctaggagttcaaaggaaataaatattagcactacacataac
aatgaacaccagagcaccaagaaacagatgagaaaggaaaatagaacagt
ggtcaacaaacatgaaggaaggatgtaagatagctctaactcaaggtaag
atgaagaaaaacaattccagtacctatggggttgatgcagggaaactcta
taccacggcaagtctggaaaaggtaaaagaagtagaaagggctgaataaa
tcggttctactaatttgaaattaaatattaaataaaaagtatagaagcaa
aggagcagaaattaggtagtgattcaacaggctttttgcagtcccctgac
tgggcacagtgctgaatgtgttccatgccttattattttaccactatatt
ttacaggatgctttttgtcaagagtgtagagtctctttactcaatgtaga
tgattgtgccagtttgcctctatgatgttccagtttaagtctatggctca
gaaaagattcaatgttgtaactcagcagtctaactcaagcttcccttggc
taacaattta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_65004802_65005886
seq2: B6Ng01-248G01.b_47_1144

seq1  GAATTCCATCAAGAAGTATCATCTAAATATTCCTGCTGAAGTTATTGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCAAGAAGTATCATCTAAATATTCCTGCTGAAGTTATTGTTA  50

seq1  AATTAGAAAACAATGATTTTTTTCAGTTTAGTGTAGTGTGTCATTGTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAAAACAATGATTTTTTTCAGTTTAGTGTAGTGTGTCATTGTTAA  100

seq1  TATCATAACTTTTCTAACAGGAACAATCCAACAAGTTCTGGAAAGCACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATAACTTTTCTAACAGGAACAATCCAACAAGTTCTGGAAAGCACCC  150

seq1  AGAAATAGACATGATGTCAGAGATGAAAACGCTTGGTGTCTGAAAATAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAGACATGATGTCAGAGATGAAAACGCTTGGTGTCTGAAAATAAC  200

seq1  ACAATTATCTTAGACATGGCAAGTCTTTCACAACTTGTGTCACCATTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTATCTTAGACATGGCAAGTCTTTCACAACTTGTGTCACCATTGAT  250

seq1  GAAATGGGCTTATCTTGAAGAGAGGAGATACATTGAAAAACCCTGATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGGCTTATCTTGAAGAGAGGAGATACATTGAAAAACCCTGATGAG  300

seq1  GAAGCCCAGCTCCAATCCAAGAGCAGGGAGATGTCATGAGTTTTCCCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCAGCTCCAATCCAAGAGCAGGGAGATGTCATGAGTTTTCCCATA  350

seq1  TGAGTGGTCTTAGTTTAAAGCAGAAATGCTCACCTCTAGTTTATCATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGTCTTAGTTTAAAGCAGAAATGCTCACCTCTAGTTTATCATAAA  400

seq1  TTTAAAGATTTTTTTTTCTGCATTAGCATTCACACACATTGTCTGCTCTC  450
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGA-TTTTTTTTCTGCATTAGCATTCACACACATTGTCTGCTCTC  449

seq1  TTGTAGTTCAAAGAGAACTAATGTTAACCAATGCTAGGTTAAGCAAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTTCAAAGAGAACTAATGTTAACCAATGCTAGGTTAAGCAAATGT  499

seq1  AATGATGTAAACAGTATAACTCACATAACCTAAGTCACATCCTTCACTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGTAAACAGTATAACTCACATAACCTAAGTCACATCCTTCACTAT  549

seq1  TTAACAATACACAATTCAGCCTCATGACCAGAATCTACAGGTGTGATGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAATACACAATTCAGCCTCATGACCAGAATCTACAGGTGTGATGCT  599

seq1  CAACTAGGTGAGCAGAGGTGTGGGTCACAGAGCTTAGTAAGAGCTGCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAGGTGAGCAGAGGTGTGGGTCACAGAGCTTAGTAAGAGCTGCCTG  649

seq1  GCCTGGGCAGACAGAAGCCACACTTCATTTGCCAGTTGCAGCAGCTTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGCAGACAGAAGCCACACTTCATTTGCCAGTTGCAGCAGCTTTGC  699

seq1  TCTATTAGTGAAGTTTCTCTAGAAGGACTGAGAAAGATGTGACTTCAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAGTGAAGTTTCTCTAGAAGGACTGAGAAAGATGTGACTTCAGTT  749

seq1  ATGTGAGTTTAAACACATATTTCCCAAGCACTGTGGCAGTTTTCTACATC  800
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATGTGAGTTTAAACACATA-TTCCCAAGCACTGTGGCAGTTTTCTACATC  798

seq1  CATTGCTCAGTACACCTTGGGAGGGTAATGTAATCTTGAGGTCATTGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTCAGTACACCTTGGGAGGGTAATGTAATCTTGAGGTCATTGCAT  848

seq1  TTCATTTTTAAAGCATACTCATTAGATATTATCTCTAGGTAATAACACAC  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTCATTTTTAAAGCATACTCATTAGATATTATCTCTAGGT-ATAACACAC  897

seq1  ACACACACACACACACACACACACACACCATAAGTGTGTATC-TTTGTA-  948
      ||||||||||||||||||||||||||||||| |||||||||| |||||| 
seq2  ACACACACACACACACACACACACACACCAT-AGTGTGTATCTTTTGTAG  946

seq1  GGTATTTAAGTCTATGTAAT-ATGTCTTCAGTGACTACTGTTCAAATGAT  997
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGTATTTAAGTCTATGTAATAATGTCTTCAGTGACTACTGTTCAAATGAT  996

seq1  -CTCTTT--AAAAATAAA-GGGCAATATGTAGT--GAGTT-CATAG--TT  1038
       ||||||  ||||||||| ||||||||||||||  ||||| |||||  ||
seq2  CCTCTTTTAAAAAATAAAGGGGCAATATGTAGTTGGAGTTCCATAGGTTT  1046

seq1  TCCAA-GCA-TATG-CTAAGAATT-CATTTGTGCAGTA-CTTTATTTTTA  1083
      ||||| ||| |||| ||||||||| || |||||||||| |||||||||||
seq2  TCCAAGGCATTATGCCTAAGAATTCCAATTGTGCAGTACCTTTATTTTTA  1096

seq1  TT  1085
      ||
seq2  TT  1098


seq1: chr7_65170225_65171380
seq2: B6Ng01-248G01.g_65_1224 (reverse)

seq1  TAAA-TGTTAG-CAAAGGAAGCTTTGAGTTAGAACTGCTGAGTTTTCCAA  48
      |||| |||||| ||| |||||| ||||||||| |||||||||||     |
seq2  TAAATTGTTAGCCAAGGGAAGC-TTGAGTTAG-ACTGCTGAGTT---ACA  45

seq1  ACAATGGAAATCTTCTCTGAGCCATAGAC-TAAACTGGACCA-CATAGAG  96
      ||| ||  |||||| |||||||||||||| ||||||||| || |||||||
seq2  ACATTG--AATCTTTTCTGAGCCATAGACTTAAACTGGAACATCATAGAG  93

seq1  GCAAACCTGGCACATTCAACTACA-TGAGTAAAGAGACTCTACACTCCTG  145
      ||||| |||||||| ||| ||||| |||||||||||||||||||||| ||
seq2  GCAAA-CTGGCACAATCATCTACATTGAGTAAAGAGACTCTACACTCTTG  142

seq1  AACAAAAGCAT-CTGT-AAATATAGGTGT-AAATA--TAGGCATGG-ACA  189
      |  |||||||| |||| ||||||||  || |||||   |||||||| |||
seq2  ACAAAAAGCATCCTGTAAAATATAGTGGTAAAATAATAAGGCATGGAACA  192

seq1  CATTCAGCACCTGTGCCCAGTCAGGGGACTGCAAAAAGCCTG-TGAATCA  238
      ||||||||| |||||||||||||||||||||||||||||||| |||||||
seq2  CATTCAGCA-CTGTGCCCAGTCAGGGGACTGCAAAAAGCCTGTTGAATCA  241

seq1  CTACCTAATTTCTGCTCCTTTGCTTCTATACTTTTTATTTAATATTTAAT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTAATTTCTGCTCCTTTGCTTCTATACTTTTTATTTAATATTTAAT  291

seq1  TTCAATTTAGTAGAACCGATTTATTCAGCCC-TTCTACTTCTTTTACCTT  337
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCAAATTAGTAGAACCGATTTATTCAGCCCTTTCTACTTCTTTTACCTT  341

seq1  TTCCAGACTTGCCGTGGTATAGAGTTTCCCTGCATCAACCCCATAGGTAC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGACTTGCCGTGGTATAGAGTTTCCCTGCATCAACCCCATAGGTAC  391

seq1  TGGAATTGTTTTTCTTCATCTTACCTTGAGTTAGAGCTATCTTACATCCT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTGTTTTTCTTCATCTTACCTTGAGTTAGAGCTATCTTACATCCT  441

seq1  TCCTTCATGTTTGTTGACCACTGTTCTATTTTCCTTTCTCATCTGTTTCT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCATGTTTGTTGACCACTGTTCTATTTTCCTTTCTCATCTGTTTCT  491

seq1  TGGTGCTCTGGTGTTCATTGTTATGTGTAGTGCTAATATTTATTTCCTTT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTCTGGTGTTCATTGTTATGTGTAGTGCTAATATTTATTTCCTTT  541

seq1  GAACTCCTAGCCTTACTAACAAATATCTTAGAACATTCTATGATACTTAT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCCTAGCCTTACTAACAAATATCTTAGAACATTCTATGATACTTAT  591

seq1  TACTTTATTTCCCCAACCCAAATTATTAGAGTTAAAAGAAAATTTAGCTT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTATTTCCCCAACCCAAATTATTAGAGTTAAAAGAAAATTTAGCTT  641

seq1  ATAATTGACTATTACCATATATTTATAAATGGCCTACCCATTTATTATGG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGACTATTACCATATATTTATAAATGGCCTACCCATTTATTATGG  691

seq1  TCACTTCTCTAGCTAATGTTCCATTCTCTACATAGAGCTGGATAGCAAAC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTCTAGCTAATGTTCCATTCTCTACATAGAGCTGGATAGCAAAC  741

seq1  TTCAACCCTGAAAATATTTCCAATGAAAGAATATCAGTGACCTTTAAAAA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCCTGAAAATATTTCCAATGAAAGAATATCAGTGACCTTTAAAAA  791

seq1  TATAAGGGGGTGGATAAATACTTAGTGCTTATGAAAACTGACTGCTAGGG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGGGGTGGATAAATACTTAGTGCTTATGAAAACTGACTGCTAGGG  841

seq1  TTTGATTCTCTGAACACATGTGAAGGCTCACACCCATCTGTAACTCCAGT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTCTCTGAACACATGTGAAGGCTCACACCCATCTGTAACTCCAGT  891

seq1  CCGAGCAAATCTGATGTTCTCTTCTGTACTCCTAATGCATCACAGATGTA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCAAATCTGATGTTCTCTTCTGTACTCCTAATGCATCACAGATGTA  941

seq1  TGTGGGTCCAGAAATGTATGCACACTAAACCCTCATACACAAGAAGTTAA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTCCAGAAATGTATGCACACTAAACCCTCATACACAAGAAGTTAA  991

seq1  AGAGAAAACAATAGAAATACAAACAACTGTTTAACTGCAGTTGTGCAAAA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAACAATAGAAATACAAACAACTGTTTAACTGCAGTTGTGCAAAA  1041

seq1  CCCAATACAGAAATATAAGGAACATGACAGACCAATCTAAAATGGAGTCT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATACAGAAATATAAGGAACATGACAGACCAATCTAAAATGGAGTCT  1091

seq1  CAAAATATTACTAAATTTTTTAATAACGGACTCTACTGGGAGCAATCTAT  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATTACTAAATTTTTTAATAACGGACTCTACTGGGAGCAATCTAT  1141

seq1  ATGAAATGTCAAAGAATTC  1156
      |||||||||||||||||||
seq2  ATGAAATGTCAAAGAATTC  1160


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