BAC Information

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BAC

Clone NameB6Ng01-248M07
Chromosome7 (Build37)
Map Location 57,541,463 - 57,542,483
singlet/doubletsinglet
Overlap geneNell1
Upstream gene5330421F07Rik, Dbx1, Htatip2, Prmt3, Slc6a5
Downstream gene4933405O20Rik, EG668766, EG668767, EG668768, EG638046, EG668770, EG668774, LOC668776, LOC434186, LOC546971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248M07.bB6Ng01-248M07.g
ACCGA056762GA056763
length1,0061,033
definitionB6Ng01-248M07.b B6Ng01-248M07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattcttcagctacttttcttctttgtgagctcttttcattgttt
gtgtcaccctacatcctgaacggcaggaagttcccaattggaagctgaag
tcagggtccagatagagatagttggcttccagacacaagatggaaagccc
tgcctcccctaccacacacccagtgaataaaaagacactgaaggagtgtt
cctctttctccacatccttgccagcatctgctgtcacctgaatttttgat
cttagccattctgactggtgtgaggtagaatctcagggttgttttgattt
gcatttccctgatgattaaagatgttgaacattttttcaggtgcttctct
gccattcggtattcctcaggtgagaattctttgatcagttctgagcccca
ttttttaatggggttatttgattttctgaagtccaccttcttgagttctt
tatatatgttggatattagtcccctatctgatctaggataggtaaagatc
ctttcccaatctgttggtggtctttttgtcttattgacagtgtcttttgc
cttgcagaagctttggagttgttgtttgggatagcattggaaatgtaatt
gaggtaaatatgtaataaaaaaaaataaatatataaaaaaaaaacactgc
cttcggtggcagcctcattcaaaaccattcactgatgtgacactgcaaac
cgaaccttgtgccgtcttcccggatatttgatcacactgtgaaccccatg
actgtgctgtttaccagaaaagcctgtttctggctttgacccttagcaca
caccttcagtgcccctggctggaatacagacacacccttagtacacacct
gcaatctcaaacaacgaaagtaaagttagttgtggaaggccatgcccata
tttgaaagtgatgtctaattgagtgacagacagtgataaattaacagaaa
agatgcacccaactcacatgagaaagggtgaagacaattcttggaggggt
aagagc
gaattcagccttttccaaccttcgtttcaaatgaccacctatttattgca
tcttcgttgtgtcagccctgtctgagtcttctttgtttcttagctagtga
tgaccatggtagccactcttgccccatttactcaccttcccaacaatata
tgaagggggagctttgaaagcatccagaagttatgccgttgctctgttac
aaattgcctgatgggtgccatggttcttggaataatacccaaacttggat
ctgggtaaggcttggtgtgaggttgggctcgtgagcttggtatttctgtt
gacctctgctttgtgttcatgcgtcttcaactttattggcattctttgca
ttcttccatcaggtctgggtggtagttctttccccagcctgggacgcccc
tcccaagtctttgcaaagttttctctttctcttagcaagctcagaaaatt
ctgaaattttctttgaaaaattgaaagaactcttaaccacccagatgaga
gtatctttttcagcctctaatgctttcttttttttttttgccattttgat
atttgaactttattttcatcatagcaatttctctctaaaaattctttttc
tttttttcaaaattattattatcttactttgtccttttgaagtataaact
gcatgggacggtaattttactccttattattttcagtctttaaggtagtg
caaggtgaattgctggtgaacaaacgtgagtttaatggaaggaaggataa
aggaaagaataaaggagggaagagaacagtggggataggattcaagtctc
tgtgtgattgtccctttcttgtgacaaagttgccttgtgtcattcaagtc
ctgctttctacaatgtgaagttgcttctgctatgttttgctactattcag
tccatgggaatattagcacacgtgtgttaccatttcccctgtaattattt
tttctggttgctgtgaaaaataccatgaacctaaaaggaaccttaaggta
gaacggggcctaatttttaggtgcttatggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_57541463_57542483
seq2: B6Ng01-248M07.g_66_1098

seq1  GAATTCAGCCTTTTCCAACCTTCGTTTCAAATGACCACCTATTTATTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTTTTCCAACCTTCGTTTCAAATGACCACCTATTTATTGCA  50

seq1  TCTTCGTTGTGTCAGCCCTGTCTGAGTCTTCTTTGTTTCTTAGCTAGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGTTGTGTCAGCCCTGTCTGAGTCTTCTTTGTTTCTTAGCTAGTGA  100

seq1  TGACCATGGTAGCCACTCTTGCCCCATTTACTCACCTTCCCAACAATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATGGTAGCCACTCTTGCCCCATTTACTCACCTTCCCAACAATATA  150

seq1  TGAAGGGGGAGCTTTGAAAGCATCCAGAAGTTATGCCGTTGCTCTGTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGGGAGCTTTGAAAGCATCCAGAAGTTATGCCGTTGCTCTGTTAC  200

seq1  AAATTGCCTGATGGGTGCCATGGTTCTTGGAATAATACCCAAACTTGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCCTGATGGGTGCCATGGTTCTTGGAATAATACCCAAACTTGGAT  250

seq1  CTGGGTAAGGCTTGGTGTGAGGTTGGGCTCGTGAGCTTGGTATTTCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTAAGGCTTGGTGTGAGGTTGGGCTCGTGAGCTTGGTATTTCTGTT  300

seq1  GACCTCTGCTTTGTGTTCATGCGTCTTCAACTTTATTGGCATTCTTTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTGCTTTGTGTTCATGCGTCTTCAACTTTATTGGCATTCTTTGCA  350

seq1  TTCTTCCATCAGGTCTGGGTGGTAGTTCTTTCCCCAGCCTGGGACGCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCATCAGGTCTGGGTGGTAGTTCTTTCCCCAGCCTGGGACGCCCC  400

seq1  TCCCAAGTCTTTGCAAAGTTTTCTCTTTCTCTTAGCAAGCTCAGAAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTCTTTGCAAAGTTTTCTCTTTCTCTTAGCAAGCTCAGAAAATT  450

seq1  CTGAAATTTTCTTTGAAAAATTGAAAGAACTCTTAACCACCCAGATGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTTTCTTTGAAAAATTGAAAGAACTCTTAACCACCCAGATGAGA  500

seq1  GTATCTTTTTCAGCCTCTAATGCTTTCTTTTTTTTTTTTGCCATTTTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTTTTCAGCCTCTAATGCTTTCTTTTTTTTTTTTGCCATTTTGAT  550

seq1  ATTTGAACTTTATTTTCATCATAGCAATTTCTCTCTAAAAATTCTTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACTTTATTTTCATCATAGCAATTTCTCTCTAAAAATTCTTTTTC  600

seq1  TTTTTTTCAAAATTATTATTATCTTACTTTGTCCTTTTGAAGTATAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCAAAATTATTATTATCTTACTTTGTCCTTTTGAAGTATAAACT  650

seq1  GCATGGGACGGTAATTTTACTCCTTATTATTTTCAGTCTTTAAGGTAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGACGGTAATTTTACTCCTTATTATTTTCAGTCTTTAAGGTAGTG  700

seq1  CAAGGTGAATTGCTGGTGAACAAACGTGAGTTTAATGGAAGGAAGGATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGAATTGCTGGTGAACAAACGTGAGTTTAATGGAAGGAAGGATAA  750

seq1  AGGAAAGAATAAAGGAGGGAAGAGAACAGT-GGGATAGGATTCAAGTCTC  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGGAAAGAATAAAGGAGGGAAGAGAACAGTGGGGATAGGATTCAAGTCTC  800

seq1  TGTGTGATTGTCCCTTTCTTGTGACAAAGTTGCCTTGTGTCATTCAAGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGATTGTCCCTTTCTTGTGACAAAGTTGCCTTGTGTCATTCAAGTC  850

seq1  CTGCTTTCTACAATGTGAAGTTGCTTCTGCTATGTTTTGCTACTATTCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTCTACAATGTGAAGTTGCTTCTGCTATGTTTTGCTACTATTCAG  900

seq1  TCCAT-GGAATATTAGCACACGTGTGTTACCATTTCCCCTGT-ATTA-TT  946
      ||||| |||||||||||||||||||||||||||||||||||| |||| ||
seq2  TCCATGGGAATATTAGCACACGTGTGTTACCATTTCCCCTGTAATTATTT  950

seq1  TTTCT-GTTGCTGTGAAAAATACCATG-ACCT-AAAGGAACC-TAAGGTA  992
      ||||| ||||||||||||||||||||| |||| ||||||||| |||||||
seq2  TTTCTGGTTGCTGTGAAAAATACCATGAACCTAAAAGGAACCTTAAGGTA  1000

seq1  GAA-GGGGCCTA--TTTTA-GTGCTTATGGTTT  1021
      ||| ||||||||  ||||| |||||||||||||
seq2  GAACGGGGCCTAATTTTTAGGTGCTTATGGTTT  1033