BAC Information

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BAC

Clone NameB6Ng01-249B15
Chromosome7 (Build37)
Map Location 12,505,994 - 12,507,111
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999
Downstream geneV1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249B15.bB6Ng01-249B15.g
ACCGA057006GA057007
length1,132629
definitionB6Ng01-249B15.b B6Ng01-249B15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtgcaaatggaggtattgggttaggcttatgtttgttcctatc
tactagtaaaatttccactatacaggaaattaagaggtgtccatgtagaa
aggcttaaataatgacgggaataattttatgtctgcctgatgactcttcc
ccaaactaattatatactatcttgtacctatgcagtaggcagtccttgat
gccagcagaagcttcccaattttaaactactaccatgtgtgttgttgttt
tgcacattattgtaagtgctgcttggaaagcatgactggtttgttgtttt
gttttgttttgttttgtttgtcttttagaaaccctttgcattgttttgtt
tttctctgtaggatatgaatgttttgcctgagggataaatattgttagtg
gagttttctttggatttagccatgaaaccacatttggcaagtcttgaatg
tccatggcatctctggctagggcattgcttaacattgaacctttgtgcca
tatatgtttcttcactgagcactccaaaaacacaggggaaagggtccttc
caactcttcatatttgctttcttcaatatatctgtgtaatgttttatact
ccaagatttatacgccaagataatattatggtatagtgattggaaagtaa
ttttcaatacttcaggtagatgggtacacacttgtcatgaaaataacaat
tggtctgtttgtaaagaggccaggatataataaattttaagttgggtact
cagatctgatcataatcacatgaaaaagtaagccgttcaccatgtgtttt
catggtgtacaacattagagtatcttttcctttcatatcaagagaaatga
aaaacaacagacttatagagagagatgtagtaggggcactttgggttcta
ttttcttgtattttaagtgagactctaaaacatgttcattgtgtagtagg
aaccaccttaaacatggaggctctcactgctacaatagactgtttccttt
agctgtggaaacttcttgctactgaaaggcgacttcattttataatggag
ctgcttgcctactacatgacagcaactcatgcatgagtggcctataactt
tctagggatggatgttgccctttttcctggaa
gaattcttggtttagttctatacactaattttttggttggtttgtttggt
tttttggtggttagcttcttgagttctttatatattttggatattagccc
tctatcagatacggggttagtgaagatattttcccaatctgtaggtagct
aatgggaatttacccaaaaatgccccaccatgccacaatggcacatgtcc
cattaagttcatagaggccttctttgtgatagtcagaagctgaaaacaac
ccagatgacccatgacagaggaatggatacagaaaatgtggttcatttac
acaatggaaaactaccccgctattaagaactagaacatcctgagttttgt
aggtcagtgggtggaactagaaaatatcatcatgagtgccataactcagg
cccaaaagaatatgtatggtatgtactcactaataagtgtatattaccca
aaaaaagaaaaaaaaaagtgccgaatactcaagatatagccaacagaact
tataacgttcaacaagatgaaggacccaagtgagtatgcctcagtcccac
ttgggagggagaagaaagcaaccacaaaaggggagagaggtatcttggag
agaaagggtacggggggtggggggacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_12505994_12507111
seq2: B6Ng01-249B15.b_49_1180 (reverse)

seq1  TTCCA-GAGAAAGGGC-ACATTC-TACCTAGAAAGTTATA-GCCACTCAT  46
      ||||| || ||||||| |||| | | |||||||||||||| |||||||||
seq2  TTCCAGGAAAAAGGGCAACATCCATCCCTAGAAAGTTATAGGCCACTCAT  50

seq1  GCATTGAGTTGCTGTCATATAGTA-GCAAGCAAGCTCCA-TATAAAATGA  94
      ||| |||||||||||||| ||||| |||||| ||||||| ||||||||||
seq2  GCA-TGAGTTGCTGTCATGTAGTAGGCAAGC-AGCTCCATTATAAAATGA  98

seq1  AGTCGCC-TTCAGTAGCAAGATGTTTCCACAGCT-AAGGAAACAGTCTAT  142
      ||||||| ||||||||||||| |||||||||||| |||||||||||||||
seq2  AGTCGCCTTTCAGTAGCAAGAAGTTTCCACAGCTAAAGGAAACAGTCTAT  148

seq1  TGTAGCAGTGAGAAGCCTCCATGTTTTAGGT-GTTCCTACTACAC-ATGA  190
      |||||||||||| ||||||||||||| |||| ||||||||||||| ||||
seq2  TGTAGCAGTGAG-AGCCTCCATGTTTAAGGTGGTTCCTACTACACAATGA  197

seq1  CCATGTTTTAGAGTCTCACTTAAAATACAAG-AAATAGAA-CCAAAGTG-  237
       |||||||||||||||||||||||||||||| |||||||| |||||||| 
seq2  ACATGTTTTAGAGTCTCACTTAAAATACAAGAAAATAGAACCCAAAGTGC  247

seq1  CCCTACTACATCTCTCTCTAT-AGTCTGTTG-TTTTCA-TTCTCTTGATA  284
      ||||||||||||||||||||| ||||||||| |||||| |||||||||||
seq2  CCCTACTACATCTCTCTCTATAAGTCTGTTGTTTTTCATTTCTCTTGATA  297

seq1  TGAAAGG-AAAGATACTCTAATGTTGTACACCATGAAAACACATGGTGAA  333
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGAAAAGATACTCTAATGTTGTACACCATGAAAACACATGGTGAA  347

seq1  CGGCTTACTTTTTCATGTGATTATGATCAGATCTGAGTACCCAACTTAAA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTACTTTTTCATGTGATTATGATCAGATCTGAGTACCCAACTTAAA  397

seq1  ATTTATTATATCCTGGCCTCTTTACAAACAGACCAATTGTTATTTTCATG  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTATATCCTGGCCTCTTTACAAACAGACCAATTGTTATTTTCATG  447

seq1  ACAAGTGTGTACCCATCTACCTGAAGTATTGAAAATTACTTTCCAATCAC  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGTGTACCCATCTACCTGAAGTATTGAAAATTACTTTCCAATCAC  497

seq1  TATACCATAATATTATCTTGGCGTATAAATCTTGGAGTATAAAACATTAC  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCATAATATTATCTTGGCGTATAAATCTTGGAGTATAAAACATTAC  547

seq1  ACAGATATATTGAAGAAAGCAAATATGAAGAGTTGGAAGGACCCTTTCCC  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATATTGAAGAAAGCAAATATGAAGAGTTGGAAGGACCCTTTCCC  597

seq1  CTGTGTTTTTGGAGTGCTCAGTGAAGAAACATATATGGCACAAAGGTTCA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTTTGGAGTGCTCAGTGAAGAAACATATATGGCACAAAGGTTCA  647

seq1  ATGTTAAGCAATGCCCTAGCCAGAGATGCCATGGACATTCAAGACTTGCC  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAGCAATGCCCTAGCCAGAGATGCCATGGACATTCAAGACTTGCC  697

seq1  AAATGTGGTTTCATGGCTAAATCCAAAGAAAACTCCACTAACAATATTTA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGTTTCATGGCTAAATCCAAAGAAAACTCCACTAACAATATTTA  747

seq1  TCCCTCAGGCAAAACATTCATATCCTACAGAGAAAAACAAAACAATGCAA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAGGCAAAACATTCATATCCTACAGAGAAAAACAAAACAATGCAA  797

seq1  AGGGTTTCTAAAAGACAAACAAAACAAAACAAAACAAAACAACAAACCAG  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTAAAAGACAAACAAAACAAAACAAAACAAAACAACAAACCAG  847

seq1  TCATGCTTTCCAAGCAGCACTTACAATAATGTGCAAAACAACAACACACA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTTTCCAAGCAGCACTTACAATAATGTGCAAAACAACAACACACA  897

seq1  TGGTAGTAGTTTAAAATTGGGAAGCTTCTGCTGGCATCAAGGACTGCCTA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTAGTTTAAAATTGGGAAGCTTCTGCTGGCATCAAGGACTGCCTA  947

seq1  CTGCATAGGTACAAGATAGTATATAATTAGTTTGGGGAAGAGTCATCAGG  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATAGGTACAAGATAGTATATAATTAGTTTGGGGAAGAGTCATCAGG  997

seq1  CAGACATAAAATTATTCCCGTCATTATTTAAGCCTTTCTACATGGACACC  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATAAAATTATTCCCGTCATTATTTAAGCCTTTCTACATGGACACC  1047

seq1  TCTTAATTTCCTGTATAGTGGAAATTTTACTAGTAGATAGGAACAAACAT  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTTCCTGTATAGTGGAAATTTTACTAGTAGATAGGAACAAACAT  1097

seq1  AAGCCTAACCCAATACCTCCATTTGCACAGAATTC  1118
      |||||||||||||||||||||||||||||||||||
seq2  AAGCCTAACCCAATACCTCCATTTGCACAGAATTC  1132