BAC Information

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BAC

Clone NameB6Ng01-249C07
Chromosome7 (Build37)
Map Location 107,581,622 - 107,740,032
singlet/doubletdoublet
Overlap geneAU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155
Upstream geneGdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3, Ppme1
Downstream geneRab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249C07.bB6Ng01-249C07.g
ACCGA057038GA057039
length977386
definitionB6Ng01-249C07.b B6Ng01-249C07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,581,622 - 107,582,603)(107,739,641 - 107,740,032)
sequence
gaattcattcctagcctgactgtgtctatattctaatctaatggaataca
gctgtgaacagtcaatgtgaagcataagaactaaaacagaggatgttctc
ggtggggcactggactgtgccattcattcatcatggcacttgaggttgac
taaaggacaatctcatctgaagtgatagtttcaaaggatttagggggaaa
caagggaaaggagaaaagaaaagttttttgcttttgtttgagtcagggtc
tctctgtgtagccctggctgtcctggaactcactttgtagactaaggctg
acctcatccacccgactctgcctccagagtgctgggattaaaggcgtgcg
ccaccacacccagacaggaagaacaagtgtgcgaacacagaggcatgaag
tagttaggtgtattgcagatgctgtaaaccacatgatctggtcagggtgc
acaggtttacaaagcactgcgataaagccaggacagtggcccagagtact
agttccatcaaagcaaaagtatttggtctttcttccaagaactgtggaag
gttcgtataataggttctggaatgagaagtcagagctttgctgtctagaa
agtgagtctagtgactataatgaattgaagggcgccaaccaagtgttttt
gttggctcatgtatcacacatcccaaggtcacctcaagtgcactatgtag
ccaaggatgaccttgaacttcagatcctcctgcctctcccgtagaatacc
cgcatgacaggtgtggaccaccacatctcgtttatgtggtgttggagatc
gaatgggtttctcacaagcctggtaagcactctgccaactgagtgcacgc
cagccatgactggagtctctacaagcgtggcacttgctcagtttagcacg
cctctaagctattcccctactctctgcagtaatggaatgaggtcaggccc
tctttacttctgtttgtttggttgttg
tcttgactgccccatcgctaagagctctaattttaagtaggcactaggac
ctggaagcggctttgggatgacatcatctttagaataccaaagccactgg
cctccaggggcggaaccagagacagtgtacttgatacaaacattatttct
caattaaccatgatttggtagcaagtcacctctttccttgggtccagaga
gctgaggccaagaagaagcaggggcagagtttgcggcagttagagaaaac
tgccctacccacctcagcgggccacactcagcatggccacctcaaatccc
aggcaaggcagaacgcccctcccttccctagagaggcgggccctcggaga
caaaatgagttctagggtaccgggggaggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_107581622_107582603
seq2: B6Ng01-249C07.b_42_1018

seq1  GAATTCATTCCTAGCCTGACTGTGTCTATATTCTAATCTAATGGAATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCTAGCCTGACTGTGTCTATATTCTAATCTAATGGAATACA  50

seq1  GCTGTGAACAGTCAATGTGAAGCATAAGAACTAAAACAGAGGATGTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAACAGTCAATGTGAAGCATAAGAACTAAAACAGAGGATGTTCTC  100

seq1  GGTGGGGCACTGGACTGTGCCATTCATTCATCATGGCACTTGAGGTTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGCACTGGACTGTGCCATTCATTCATCATGGCACTTGAGGTTGAC  150

seq1  TAAAGGACAATCTCATCTGAAGTGATAGTTTCAAAGGATTTAGGGGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGACAATCTCATCTGAAGTGATAGTTTCAAAGGATTTAGGGGGAAA  200

seq1  CAAGGGAAAGGAGAAAAGAAAAGTTTTTTGCTTTTGTTTGAGTCAGGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAAAGGAGAAAAGAAAAGTTTTTTGCTTTTGTTTGAGTCAGGGTC  250

seq1  TCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACTAAGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACTAAGGCTG  300

seq1  ACCTCATCCACCCGACTCTGCCTCCAGAGTGCTGGGATTAAAGGCGTGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATCCACCCGACTCTGCCTCCAGAGTGCTGGGATTAAAGGCGTGCG  350

seq1  CCACCACACCCAGACAGGAAGAACAAGTGTGCGAACACAGAGGCATGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACACCCAGACAGGAAGAACAAGTGTGCGAACACAGAGGCATGAAG  400

seq1  TAGTTAGGTGTATTGCAGATGCTGTAAACCACATGATCTGGTCAGGGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAGGTGTATTGCAGATGCTGTAAACCACATGATCTGGTCAGGGTGC  450

seq1  ACAGGTTTACAAAGCACTGCGATAAAGCCAGGACAGTGGCCCAGAGTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTTACAAAGCACTGCGATAAAGCCAGGACAGTGGCCCAGAGTACT  500

seq1  AGTTCCATCAAAGCAAAAGTATTTGGTCTTTCTTCCAAGAACTGTGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCATCAAAGCAAAAGTATTTGGTCTTTCTTCCAAGAACTGTGGAAG  550

seq1  GTTCGTATAATAGGTTCTGGAATGAGAAGTCAGAGCTTTGCTGTCTAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGTATAATAGGTTCTGGAATGAGAAGTCAGAGCTTTGCTGTCTAGAA  600

seq1  AGTGAGTCTAGTGACTATAATGAATTGAAGGGCGCCAACCAAGTGTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTCTAGTGACTATAATGAATTGAAGGGCGCCAACCAAGTGTTTTT  650

seq1  GTTGGCTCATGTATCACACATCCCAAGGTCACCTCAAGTGCACTATGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCTCATGTATCACACATCCCAAGGTCACCTCAAGTGCACTATGTAG  700

seq1  CCAAGGATGACCTTGAACTTCAGATCCTCCTGCCTCTCCCGTAGAATACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGATGACCTTGAACTTCAGATCCTCCTGCCTCTCCCGTAGAATACC  750

seq1  CGCATGACAGGTGTGGACCACCACATCTCGTTTATGTGGTGTTGGAGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGACAGGTGTGGACCACCACATCTCGTTTATGTGGTGTTGGAGATC  800

seq1  GAATGGGTTTCTCACAAGCCTGGTAAGCACTCTGCCAACTGAGTGCACGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGTTTCTCACAAGCCTGGTAAGCACTCTGCCAACTGAGTGCACGC  850

seq1  CAGCCATGACTGGAGTCTCTACAAGCGTGGCACTTGCTCAGTTTAGCACG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATGACTGGAGTCTCTACAAGCGTGGCACTTGCTCAGTTTAGCACG  900

seq1  CCTCTAAGCTATTTCCCTACTCTCTGCAGTTAAAGGAATGAGGTCAGGGC  950
      ||||||||||||| ||||||||||||||| ||| |||||||||||| |||
seq2  CCTCTAAGCTATTCCCCTACTCTCTGCAG-TAATGGAATGAGGTCA-GGC  948

seq1  CCTCTTTTACTTCTGTTTTGTTTTGTTTGTTG  982
      |||| |||||||||||||   |||| ||||||
seq2  CCTC-TTTACTTCTGTTT--GTTTGGTTGTTG  977

seq1: chr7_107739641_107740032
seq2: B6Ng01-249C07.g_65_456 (reverse)

seq1  CCCCCCCCCTCCCCCGGTACCCTAGAACTCATTTTGTCTCCGAGGGCCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCTCCCCCGGTACCCTAGAACTCATTTTGTCTCCGAGGGCCCG  50

seq1  CCTCTCTAGGGAAGGGAGGGGCGTTCTGCCTTGCCTGGGATTTGAGGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTAGGGAAGGGAGGGGCGTTCTGCCTTGCCTGGGATTTGAGGTGG  100

seq1  CCATGCTGAGTGTGGCCCGCTGAGGTGGGTAGGGCAGTTTTCTCTAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTGAGTGTGGCCCGCTGAGGTGGGTAGGGCAGTTTTCTCTAACTG  150

seq1  CCGCAAACTCTGCCCCTGCTTCTTCTTGGCCTCAGCTCTCTGGACCCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAAACTCTGCCCCTGCTTCTTCTTGGCCTCAGCTCTCTGGACCCAAG  200

seq1  GAAAGAGGTGACTTGCTACCAAATCATGGTTAATTGAGAAATAATGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGTGACTTGCTACCAAATCATGGTTAATTGAGAAATAATGTTTG  250

seq1  TATCAAGTACACTGTCTCTGGTTCCGCCCCTGGAGGCCAGTGGCTTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGTACACTGTCTCTGGTTCCGCCCCTGGAGGCCAGTGGCTTTGGT  300

seq1  ATTCTAAAGATGATGTCATCCCAAAGCCGCTTCCAGGTCCTAGTGCCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAAGATGATGTCATCCCAAAGCCGCTTCCAGGTCCTAGTGCCTAC  350

seq1  TTAAAATTAGAGCTCTTAGCGATGGGGCAGTCAAGAGAATTC  392
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTAGAGCTCTTAGCGATGGGGCAGTCAAGAGAATTC  392