BAC Information

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BAC

Clone NameB6Ng01-250B12
Chromosome7 (Build37)
Map Location 78,434,286 - 78,602,052
singlet/doubletdoublet
Overlap genenone
Upstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
Downstream geneLOC665535, Mctp2, LOC100042873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250B12.bB6Ng01-250B12.g
ACCGA057735GA057736
length1,2161,186
definitionB6Ng01-250B12.b B6Ng01-250B12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,600,831 - 78,602,052)(78,434,286 - 78,435,479)
sequence
gaattccttctatttccttatctgcttcctctcattccatcttcaggggc
ttcccctgtactggtctttctatcgcttgcatactgtaccatttaacaag
tgatgttaaaaatgataaagccaccaactgcaatttctgtttgaagacgg
tgacagggtgccgtgaaaacacccagtagactggagttcactctgctcac
aagagcttcgccttcgcatattttactgtcagtttcttgacatttttgtc
agcttacggctggagggcataggtgctagcggcaggtccaaccacatttt
ttttttcctctctgatgcatttttagagtctataaaaaaataaaataaaa
taaagccggagatgtggagtggggtgagaaagcatagggaagagaggcga
cggtgtagcagcagagccctatgagggtcaaggttatgagaatcacatac
actggcctctctctacctgctggagactggaaagagctggaaactgcgac
cgctcccatgccctcacgcccagttccggagacacaatgcttagaaagta
actgtttcattttctccatttcctccctatacaagggaaacaaaagacaa
atatttggctctgctgtgtgcagaagtaatctttgctcttcagtgctctt
tcaccctgtacggaagaactgtgtccatcctggagctgagatctctgcac
cacacgcgggtcgttttccctgcagccgctcctctggctccacccgcctg
gttctttacagctaagccctttatggttaagtgctcttctaaaatcgtgg
aacacatgtacagacacacacttaactcatccttccagaagtaccgattc
tgtaagcagcttttcctgtcattcccccaccattttacaaacgcagaaaa
caaaaccctgaattcaaattctggggatatactcggttttgtttctgatg
atctaaatagagcaatgacaacggggaaaaacccacttgttaggtccaaa
gtcccgtgccccaccccaccccactcacccccagccctgctggtaacaat
gtcctcagtcagatgattgcttggtgcataaacaggaatgctggttgcct
gaacagagcctaagcccaattctgtactagatctctctatccccttgacc
taggtcatacgtcaggcaaggggtgtctaggtgcaggttcttactgcaaa
cagcctggttttgagg
gaattccagttgtctgattcatcctgacatgggagtgctttgcttctttt
actctgcagaactgtgaggcgacgacgagagaaggatctcattccttgtg
ggtttcctaagcaatcttcattttttcccatagttaaggatgggattttt
ccgatgagaaactctgcacttatgacataagagctccatttcacaaccca
ttttatgcttcttggattttttttctcatttctcacaattcaaagtaaat
cccgagattactaatacaattaagggcctggaaagaggaaaaactgctta
ttatggccttgataaccctgcccagaaaacaagagactcctctgtcacga
attccaattttagagtttgatacaacaataacagtgaatggaagaaacac
aggaaagcagatatgtgtaagatcatccacagccagaaatgtttatctag
aaacacggggctctagtgagatatctatcattgcctcctttcctagattt
cagcttggcagaatagccttatctgttgtctaagagtcgtgcaaccttat
tttggaaaggtctccccagtcacacgtaccttatactggagaggaaggca
gttgattacatatttttttaaactgaaagaatttttggagaacaatgcaa
actgtatttatatcacagcctgcaaagattaagacaagtggatttgtcac
caacagtggtattgggattgcaattctctttgtttagagggaaacacaca
catttattctttcagataaagcaacatacaaaagtaaggcctaattgctc
acatacatgaactgcctgtccatggggattaagtagtgtgaattgaaatg
agcatatatcggggaaaacatatcaagtatataaataccataaatgacaa
tcactaccgaacttcagagtcacagcttatatgtatttaaagagcataag
cagtaatgtttgctgtttattttacatctgagatgagaaagaataagatt
ccatcaagcttgtgcttagtagcatcatccctcagtctaagttcaaagtg
cttcctcatgaatagtcacccatcccaagttcagaagtcttctgatcaga
taaaacacattcctcatgcctttaatgaagacctataaacacctgctcga
ggttaataattatttactagtaattctctgggtcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_78600831_78602052
seq2: B6Ng01-250B12.b_47_1261 (reverse)

seq1  CTCAAA--CAGGCTGTTT---TGATGGACTGGCACCTAGACA-CCCTTGC  44
      ||||||  ||||||||||     | | ||  ||||||||||| |||||||
seq2  CTCAAAACCAGGCTGTTTGCAGTAAGAACCTGCACCTAGACACCCCTTGC  50

seq1  TTGAGGTAATTGACCTTGGGTCAGGGGGAATTAAGAGAGGATCCTAGTAC  94
       ||| |||  ||||| | ||||| |||||    ||||| ||| |||||||
seq2  CTGACGTA--TGACC-TAGGTCAAGGGGA---TAGAGA-GAT-CTAGTAC  92

seq1  AGAAACTGGCCTTTAGGCTTCTGTTCAGCCAA-CAGCCATCCTGTTTATG  143
      ||||   |||  |||||| ||||||||| ||| ||||  |||||||||||
seq2  AGAATTGGGC--TTAGGC-TCTGTTCAGGCAACCAGCATTCCTGTTTATG  139

seq1  CACCAAGCATTCTTCTG-CTGAGGACATTGTTACCAGCAGGGCTGGGGGG  192
      ||||||||| || |||| ||||||||||||||||||||||||||||||| 
seq2  CACCAAGCAATCATCTGACTGAGGACATTGTTACCAGCAGGGCTGGGGG-  188

seq1  TGGGGTGGGGTGGGGGTGGGGGCACGGGACTTTGGACCTAACAAGTGGGT  242
        | |||||||||||   ||||||||||||||||||||||||||||||| 
seq2  -TGAGTGGGGTGGGG--TGGGGCACGGGACTTTGGACCTAACAAGTGGG-  234

seq1  TTTTTCCCCGTTGTCATTGCTCTATTTAGATCATCAGAAACAAAACCGAG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCCGTTGTCATTGCTCTATTTAGATCATCAGAAACAAAACCGAG  284

seq1  TATATCCCCAGAATTTTGAATTCA-GGTTTTGTTTTCTGCGTTTGT-AAA  340
      ||||||||||||| |||||||||| ||||||||||||||||||||| |||
seq2  TATATCCCCAGAA-TTTGAATTCAGGGTTTTGTTTTCTGCGTTTGTAAAA  333

seq1  TGGTGGGGGAATGACAGGAAAAGCTGCTTACAGAATCGGTACTTCTGGAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGGGAATGACAGGAAAAGCTGCTTACAGAATCGGTACTTCTGGAA  383

seq1  GGATGAGTTAAGTGTGTGTCTGTACATGTGTTCCACGATTTTAGAAGAGC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGTTAAGTGTGTGTCTGTACATGTGTTCCACGATTTTAGAAGAGC  433

seq1  ACTTAACCATAAAGGGCTTAGCTGTAAAGAACCAGGCGGGTGGAGCCAGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACCATAAAGGGCTTAGCTGTAAAGAACCAGGCGGGTGGAGCCAGA  483

seq1  GGAGCGGCTGCAGGGAAAACGACCCGCGTGTGGTGCAGAGATCTCAGCTC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCGGCTGCAGGGAAAACGACCCGCGTGTGGTGCAGAGATCTCAGCTC  533

seq1  CAGGATGGACACAGTTCTTCCGTACAGGGTGAAAGAGCACTGAAGAGCAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGGACACAGTTCTTCCGTACAGGGTGAAAGAGCACTGAAGAGCAA  583

seq1  AGATTACTTCTGCACACAGCAGAGCCAAATATTTGTCTTTTGTTTCCCTT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACTTCTGCACACAGCAGAGCCAAATATTTGTCTTTTGTTTCCCTT  633

seq1  GTATAGGGAGGAAATGGAGAAAATGAAACAGTTACTTTCTAAGCATTGTG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGGGAGGAAATGGAGAAAATGAAACAGTTACTTTCTAAGCATTGTG  683

seq1  TCTCCGGAACTGGGCGTGAGGGCATGGGAGCGGTCGCAGTTTCCAGCTCT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGGAACTGGGCGTGAGGGCATGGGAGCGGTCGCAGTTTCCAGCTCT  733

seq1  TTCCAGTCTCCAGCAGGTAGAGAGAGGCCAGTGTATGTGATTCTCATAAC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTCTCCAGCAGGTAGAGAGAGGCCAGTGTATGTGATTCTCATAAC  783

seq1  CTTGACCCTCATAGGGCTCTGCTGCTACACCGTCGCCTCTCTTCCCTATG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACCCTCATAGGGCTCTGCTGCTACACCGTCGCCTCTCTTCCCTATG  833

seq1  CTTTCTCACCCCACTCCACATCTCCGGCTTTATTTTATTTTATTTTTTTA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCACCCCACTCCACATCTCCGGCTTTATTTTATTTTATTTTTTTA  883

seq1  TAGACTCTAAAAATGCATCAGAGAGGAAAAAAAAAATGTGGTTGGACCTG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCTAAAAATGCATCAGAGAGGAAAAAAAAAATGTGGTTGGACCTG  933

seq1  CCGCTAGCACCTATGCCCTCCAGCCGTAAGCTGACAAAAATGTCAAGAAA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTAGCACCTATGCCCTCCAGCCGTAAGCTGACAAAAATGTCAAGAAA  983

seq1  CTGACAGTAAAATATGCGAAGGCGAAGCTCTTGTGAGCAGAGTGAACTCC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGTAAAATATGCGAAGGCGAAGCTCTTGTGAGCAGAGTGAACTCC  1033

seq1  AGTCTACTGGGTGTTTTCACGGCACCCTGTCACCGTCTTCAAACAGAAAT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACTGGGTGTTTTCACGGCACCCTGTCACCGTCTTCAAACAGAAAT  1083

seq1  TGCAGTTGGTGGCTTTATCATTTTTAACATCACTTGTTAAATGGTACAGT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTGGTGGCTTTATCATTTTTAACATCACTTGTTAAATGGTACAGT  1133

seq1  ATGCAAGCGATAGAAAGACCAGTACAGGGGAAGCCCCTGAAGATGGAATG  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGCGATAGAAAGACCAGTACAGGGGAAGCCCCTGAAGATGGAATG  1183

seq1  AGAGGAAGCAGATAAGGAAATAGAAGGAATTC  1222
      ||||||||||||||||||||||||||||||||
seq2  AGAGGAAGCAGATAAGGAAATAGAAGGAATTC  1215

seq1: chr7_78434286_78435479
seq2: B6Ng01-250B12.g_66_1251

seq1  GAATTCCAGTTGTCTGATTCATCCTGACATGGGAGTGCTTTGCTTCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTGTCTGATTCATCCTGACATGGGAGTGCTTTGCTTCTTTT  50

seq1  ACTCTGCAGAACTGTGAGGCGACGACGAGAGAAGGATCTCATTCCTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCAGAACTGTGAGGCGACGACGAGAGAAGGATCTCATTCCTTGTG  100

seq1  GGTTTCCTAAGCAATCTTCATTTTTTCCCATAGTTAAGGATGGGATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCTAAGCAATCTTCATTTTTTCCCATAGTTAAGGATGGGATTTTT  150

seq1  CCGATGAGAAACTCTGCACTTATGACATAAGAGCTCCATTTCACAACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGAGAAACTCTGCACTTATGACATAAGAGCTCCATTTCACAACCCA  200

seq1  TTTTATGCTTCTTGGATTTTTTTTCTCATTTCTCACAATTCAAAGTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGCTTCTTGGATTTTTTTTCTCATTTCTCACAATTCAAAGTAAAT  250

seq1  CCCGAGATTACTAATACAATTAAGGGCCTGGAAAGAGGAAAAACTGCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGATTACTAATACAATTAAGGGCCTGGAAAGAGGAAAAACTGCTTA  300

seq1  TTATGGCCTTGATAACCCTGCCCAGAAAACAAGAGACTCCTCTGTCACGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCCTTGATAACCCTGCCCAGAAAACAAGAGACTCCTCTGTCACGA  350

seq1  ATTCCAATTTTAGAGTTTGATACAACAATAACAGTGAATGGAAGAAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAATTTTAGAGTTTGATACAACAATAACAGTGAATGGAAGAAACAC  400

seq1  AGGAAAGCAGATATGTGTAAGATCATCCACAGCCAGAAATGTTTATCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCAGATATGTGTAAGATCATCCACAGCCAGAAATGTTTATCTAG  450

seq1  AAACACGGGGCTCTAGTGAGATATCTATCATTGCCTCCTTTCCTAGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACGGGGCTCTAGTGAGATATCTATCATTGCCTCCTTTCCTAGATTT  500

seq1  CAGCTTGGCAGAATAGCCTTATCTGTTGTCTAAGAGTCGTGCAACCTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGGCAGAATAGCCTTATCTGTTGTCTAAGAGTCGTGCAACCTTAT  550

seq1  TTTGGAAAGGTCTCCCCAGTCACACGTACCTTATACTGGAGAGGAAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAAGGTCTCCCCAGTCACACGTACCTTATACTGGAGAGGAAGGCA  600

seq1  GTTGATTACATATTTTTTTAAACTGAAAGAATTTTTGGAGAACAATGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTACATATTTTTTTAAACTGAAAGAATTTTTGGAGAACAATGCAA  650

seq1  ACTGTATTTATATCACAGCCTGCAAAGATTAAGACAAGTGGATTTGTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTTATATCACAGCCTGCAAAGATTAAGACAAGTGGATTTGTCAC  700

seq1  CAACAGTGGTATTGGGATTGCAATTCTCTTTGTTTAGAGGGAAACACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTGGTATTGGGATTGCAATTCTCTTTGTTTAGAGGGAAACACACA  750

seq1  CATTTATTCTTTCAGATAAAGCAACATACAAAAGTAAGGCCTAATTGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTCTTTCAGATAAAGCAACATACAAAAGTAAGGCCTAATTGCTC  800

seq1  ACATACATGAACTGCCTGTCCATGGGGATTAAGTAGTGTGAATTGAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATGAACTGCCTGTCCATGGGGATTAAGTAGTGTGAATTGAAATG  850

seq1  AGCATATATCGGGGAAAACATATCAAGTATATAAATACCATAAATGACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATATCGGGGAAAACATATCAAGTATATAAATACCATAAATGACAA  900

seq1  TCACTACCGAACTTCAGAGTCACAGCTTATATGTATTTAAAGAGCATAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTACCGAACTTCAGAGTCACAGCTTATATGTATTTAAAGAGCATAAG  950

seq1  CAGTAATGTTTGCTGTTTATTTTACAATCTGAGATGAGAAAGAAT-AGAT  999
      ||||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  CAGTAATGTTTGCTGTTTATTTTAC-ATCTGAGATGAGAAAGAATAAGAT  999

seq1  TCCATCAAAGCTGTGCTTAGTAGCATCCATCCCTCAGTTCTAAGTTCCAA  1049
      ||||||||   ||||||||||||||| |||||||||| |||||||| |||
seq2  TCCATCAAGCTTGTGCTTAGTAGCAT-CATCCCTCAG-TCTAAGTT-CAA  1046

seq1  AGTTGCTTTCTCATGAATAGTCACCCATCCCAAGTCCAGAAAGTTCTTTC  1099
      || ||||| |||||||||||||||||||||||||| ||| ||||   |||
seq2  AG-TGCTTCCTCATGAATAGTCACCCATCCCAAGTTCAG-AAGT--CTTC  1092

seq1  TGATCAGATAAACACCATTCTCTATG-CTTTTATGAAGACCCTATAAAAC  1148
      ||||||||||||   |||||   ||| |||| ||||||| ||||| ||||
seq2  TGATCAGATAAAACACATTCCTCATGCCTTTAATGAAGA-CCTAT-AAAC  1140

seq1  AACTGCTCGAATTATAATATTTAATTACTAAGTAAT--TCTGGGTCCT  1194
      | ||||||||  | ||||| ||| ||||| ||||||  ||||||||||
seq2  ACCTGCTCGAGGT-TAATAATTATTTACT-AGTAATTCTCTGGGTCCT  1186