BAC Information

Click to search

BAC

Clone NameB6Ng01-250L03
Chromosome7 (Build37)
Map Location 6,797,239 - 6,797,794
singlet/doubletsinglet
Overlap geneUsp29
Upstream geneV1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348, Olfr1349, LOC665328, Olfr1350, Zim2, Zim1, Peg3, LOC627961
Downstream geneAurkc, LOC628030, LOC100041822, 5730403M16Rik, 2810409K11Rik, Vmn2r-ps35, Zfp418, BC023179, 6430701C03Rik, Clcn4-2, V2r15, LOC100041866, LOC100042577, Vmn2r31, Vmn2r-ps36, V2r5, LOC100041883, EG628117, Vmn2r33, LOC665470, EG665474, EG628368, LOC100042636, LOC665485, EG625353, Vmn2r-ps40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250L03.bB6Ng01-250L03.g
ACCGA058170GA058171
length446550
definitionB6Ng01-250L03.b B6Ng01-250L03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctacatcttaatccaaaggaagccaggagcagactgacttccagg
gagttagaagaagggtctcaaagcccacactcaaagtgacacacttcctc
caacaaggccaaacctactccaacaaggccacacctcttaatagtgctac
tccctgggtcaagcatattcaaaccaccacacaggtcaccctgagttgca
gaatgagagacctgcttttaaaaaatgggggtggggcccagggatccatc
ccataattagccaccaaacacagacactatagcacatgctagcaagagtt
tgctgaaaggatcctgatatagctgtctcatgtgaggctatgccagtgcc
cggaaaatacagaagtggatgctcacagtcagctattggatggatcacag
ggcccccaatggaggagctacagaaagtacccaaggagctgaaggg
aagatagacggcttctggttgttagtatctccagaacattggctaggaat
catggtttctgagaaatcctttccctgccccattgaggtgacagcttgga
ctccactctaccgttcaacccattaaccagagaaatttccagaacatgtc
agtttctctggcccttgggacagtcttagagctttgtccaaggggctgtg
agattccaggagaaactttgctcccacattaactgccctttcactggaag
tctgggccctgttcccctggcagggtttagagcgtggagcccagggaaca
tgatttttccatggtgaggagtccatgggtagcagagactctttgtaaat
gctcttggttggactcaggaacaggtcacaagaagccatagtatgatcta
actgtaggattaaagcagagagctggtgagatgctgtgatggataaagga
gctttctgtcaagcctgtaaaagcctccaaaaaaaaaaatctcataagaa
gaagaggaagtggaggaaaaggaggaaggggaggaagaggaagatgagaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_6797239_6797794
seq2: B6Ng01-250L03.g_68_623

seq1  GAATTCAAGATAGACGGCTTCTGGTTGTTAGTATCTCCAGAACATTGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATAGACGGCTTCTGGTTGTTAGTATCTCCAGAACATTGGCT  50

seq1  AGGAATCATGGTTTCTGAGAAATCCTTTCCCTGCCCCATTGAGGTGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCATGGTTTCTGAGAAATCCTTTCCCTGCCCCATTGAGGTGACAG  100

seq1  CTTGGACTCCACTCTACCGTTCAACCCATTAACCAGAGAAATTTCCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACTCCACTCTACCGTTCAACCCATTAACCAGAGAAATTTCCAGAA  150

seq1  CATGTCAGTTTCTCTGGCCCTTGGGACAGTCTTAGAGCTTTGTCCAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAGTTTCTCTGGCCCTTGGGACAGTCTTAGAGCTTTGTCCAAGGG  200

seq1  GCTGTGAGATTCCAGGAGAAACTTTGCTCCCACATTAACTGCCCTTTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAGATTCCAGGAGAAACTTTGCTCCCACATTAACTGCCCTTTCAC  250

seq1  TGGAAGTCTGGGCCCTGTTCCCCTGGCAGGGTTTAGAGCGTGGAGCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTCTGGGCCCTGTTCCCCTGGCAGGGTTTAGAGCGTGGAGCCCAG  300

seq1  GGAACATGATTTTTCCATGGTGAGGAGTCCATGGGTAGCAGAGACTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATGATTTTTCCATGGTGAGGAGTCCATGGGTAGCAGAGACTCTTT  350

seq1  GTAAATGCTCTTGGTTGGACTCAGGAACAGGTCACAAGAAGCCATAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGCTCTTGGTTGGACTCAGGAACAGGTCACAAGAAGCCATAGTAT  400

seq1  GATCTAACTGTAGGATTAAAGCAGAGAGCTGGTGAGATGCTGTGATGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAACTGTAGGATTAAAGCAGAGAGCTGGTGAGATGCTGTGATGGAT  450

seq1  AAAGGAGCTTTCTGTCAAGCCTGTAAAAGCCTCCAAAAAAAAAAATCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGCTTTCTGTCAAGCCTGTAAAAGCCTCCAAAAAAAAAAATCTCA  500

seq1  TAAGAAGAAGAGGAAGTGGAGGAAAAGGAGGAAGGGGAGGAAGAGGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGAAGAGGAAGTGGAGGAAAAGGAGGAAGGGGAGGAAGAGGAAGA  550

seq1  TGAGAA  556
      ||||||
seq2  TGAGAA  556