BAC Information

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BAC

Clone NameB6Ng01-252D01
Chromosome7 (Build37)
Map Location 152,167,600 - 152,302,726
singlet/doubletdoublet
Overlap genenone
Upstream geneShank2, Cttn, Ppfia1, Fadd, Tmem16a, LOC669079, LOC677315, Fgf3, Fgf4, Fgf15, Oraov1, Ccnd1
Downstream gene1810010D01Rik, LOC100040049, Tpcn2, Mrgprf, Mrgprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252D01.bB6Ng01-252D01.g
ACCGA059255GA059256
length469185
definitionB6Ng01-252D01.b B6Ng01-252D01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,167,600 - 152,168,074)(152,302,542 - 152,302,726)
sequence
ccatgttgttgcccaggagagctggcccgtgggcatcaggcttttctgct
tggccaaggccagcagagagtcccagcgcctgccttcctatgcttccctg
ggctggcagcatgggtgagctgctgtgaagggcaagaaagtgaatgggag
actggctactgaatatctctcagttccctcttcctagcccatttcctgtt
ttacacggggctgctcttggcttctctgtagatgccctctggggcgtctt
tcctctgcagtgagaggtttgcccactgtaggagatcatcagagggtgct
accctgggggagtccattttcaataggaagctagctgggaggtggctcct
ggagacacagcgcacatgctcagttgcagctgcctggtcagacaagactt
caggacttcaggattaagttttgcagatgagtaagtttgaatgtattgag
tagataaagggtttattgg
tgcccaccattgtgtactgaaatttgattttgcttcccatttccacagag
tcacaggtgatcagactgactagggtgggaccaacacggttctgctttcc
catggttgataatcttgaggatacaggctgactatgctactgctggtggt
ggtagtgatgtcagtaatgttgatggtggtggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_152167600_152168074
seq2: B6Ng01-252D01.b_48_522

seq1  GAATTCCCATGTTGTTGCCCAGGAGAGCTGGCCAGTGGGCATCAGGCTTT  50
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAATTCCCATGTTGTTGCCCAGGAGAGCTGGCCCGTGGGCATCAGGCTTT  50

seq1  TCTGCTTGGCCAAGGCCAGCAGAGAGTCCCAGCGCCTGCCTTCCTATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTGGCCAAGGCCAGCAGAGAGTCCCAGCGCCTGCCTTCCTATGCT  100

seq1  TCCCTGGGCTGGCAGCATGGGTGAGCTGCTGTGAAGGGCAAGAAAGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGCTGGCAGCATGGGTGAGCTGCTGTGAAGGGCAAGAAAGTGAA  150

seq1  TGGGAGACTGGCTACTGAATATCTCTCAGTTCCCTCTTCCTAGCCCATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGACTGGCTACTGAATATCTCTCAGTTCCCTCTTCCTAGCCCATTT  200

seq1  CCTGTTTTACACGGGGCTGCTCTTGGCTTCTCTGTAGATGCCCTCTGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTACACGGGGCTGCTCTTGGCTTCTCTGTAGATGCCCTCTGGGG  250

seq1  CGTCTTTCCTCTGCAGTGAGAGGTTTGCCCACTGTAGGAGATCATCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTTCCTCTGCAGTGAGAGGTTTGCCCACTGTAGGAGATCATCAGAG  300

seq1  GGTGCTACCCTGGGGGAGTCCATTTTCAATAGGAAGCTAGCTGGGAGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTACCCTGGGGGAGTCCATTTTCAATAGGAAGCTAGCTGGGAGGTG  350

seq1  GCTCCTGGAGACACAGCGCACATGCTCAGTTGCAGCTGCCTGGTCAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGGAGACACAGCGCACATGCTCAGTTGCAGCTGCCTGGTCAGACA  400

seq1  AGACTTCAGGACTTCAGGATTAAGTTTTGCAGATGAGTAAGTTTGAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCAGGACTTCAGGATTAAGTTTTGCAGATGAGTAAGTTTGAATGT  450

seq1  ATTGAGTAGATAAAGGGTTTATTGG  475
      |||||||||||||||||||||||||
seq2  ATTGAGTAGATAAAGGGTTTATTGG  475

seq1: chr7_152302542_152302726
seq2: B6Ng01-252D01.g_77_261 (reverse)

seq1  CCACCACCACCATCAACATTACTGACATCACTACCACCACCAGCAGTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCACCATCAACATTACTGACATCACTACCACCACCAGCAGTAGC  50

seq1  ATAGTCAGCCTGTATCCTCAAGATTATCAACCATGGGAAAGCAGAACCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCAGCCTGTATCCTCAAGATTATCAACCATGGGAAAGCAGAACCGT  100

seq1  GTTGGTCCCACCCTAGTCAGTCTGATCACCTGTGACTCTGTGGAAATGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTCCCACCCTAGTCAGTCTGATCACCTGTGACTCTGTGGAAATGGG  150

seq1  AAGCAAAATCAAATTTCAGTACACACTGGTGGGCA  185
      ||||||||||||||||||||||||| |||||||||
seq2  AAGCAAAATCAAATTTCAGTACACAATGGTGGGCA  185