BAC Information

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BAC

Clone NameB6Ng01-252H02
Chromosome7 (Build37)
Map Location 52,025,161 - 52,026,166
singlet/doubletsinglet
Overlap geneVrk3
Upstream geneKlk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473
Downstream geneEG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252H02.g
ACCGA059438
length1,001
definitionB6Ng01-252H02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgccatgcattccagcaggagacagttttgagctctggggcc
gtgccgcccagggtcggcttctggcccactgttccgggtgctgggtgacc
ttcacttctgtgagccatgtgagccctgttgttctcccactgtagactgc
tatgtaagcagcacccgagtcacaagcatacacaattagggagtaagcac
gctgtacagggtttaatgctcattgcatgcaacacaccacaacttattca
caggctgtagtctgagggcctacacctccagtcagtcaccctgcctccat
acctccaggattaggaggtaaagactcagtgagcctttagatcttggcag
ttgtacttggcagttacacagttgttaatgatagaaggaagcagtgtgct
ggcgttcagcaccgaggacagctacacacccgtgttggtgcctcctaact
gccattcagcacctaggatagcggcaggaattcctctttggaaatctaag
cacacagatgactttgaaaggaggcttcagaaccagggacgactagatgt
tggtcttagggcttgctctattgtgagaaaatgtggcatctgctgggtgc
ctggggtattgcttcagcaccaaggacagcagaaaccaatcctggagaag
ccctgaaggtccaggatggccttcacaggagactgaggtgctaacagagg
tcagacttcctggctgtctccaggattggtagctggtccctgggaagatg
ggatctctgagaaaagagtgagcagttgagggaacacgcacagaagcagg
aagcctgaagtagatccatagacaggtcagagcctagtaggactgagaag
cagagggtggggcttgagaacattggctgattgtaggagagatcagatga
atgataggagccagcctgaccatctaaactaagaagcagagggaaagggc
cttgagggaaggagcctgaagtatgtctgtctttcctagtgggggttgtg
t
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_52025161_52026166
seq2: B6Ng01-252H02.g_72_1072

seq1  GAATTCTCTGCCATGCATTCCAGCAGGAGACAGTTTTGAGCTCTGGGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCCATGCATTCCAGCAGGAGACAGTTTTGAGCTCTGGGGCC  50

seq1  GTGCCGCCCAGGGTCGGCTTCTGGCCCACTGTTCCGGGTGCTGGGTGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCGCCCAGGGTCGGCTTCTGGCCCACTGTTCCGGGTGCTGGGTGACC  100

seq1  TTCACTTCTGTGAGCCATGTGAGCCCTGTTGTTCTCCCACTGTAGACTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTCTGTGAGCCATGTGAGCCCTGTTGTTCTCCCACTGTAGACTGC  150

seq1  TATGTAAGCAGCACCCGAGTCACAAGCATACACAATTAGGGAGTAAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAGCAGCACCCGAGTCACAAGCATACACAATTAGGGAGTAAGCAC  200

seq1  GCTGTACAGGGTTTAATGCTCATTGCATGCAACACACCACAACTTATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTACAGGGTTTAATGCTCATTGCATGCAACACACCACAACTTATTCA  250

seq1  CAGGCTGTAGTCTGAGGGCCTACACCTCCAGTCAGTCACCCTGCCTCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGTAGTCTGAGGGCCTACACCTCCAGTCAGTCACCCTGCCTCCAT  300

seq1  ACCTCCAGGATTAGGAGGTAAAGACTCAGTGAGCCTTTAGATCTTGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAGGATTAGGAGGTAAAGACTCAGTGAGCCTTTAGATCTTGGCAG  350

seq1  TTGTACTTGGCAGTTACACAGTTGTTAATGATAGAAGGAAGCAGTGTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTTGGCAGTTACACAGTTGTTAATGATAGAAGGAAGCAGTGTGCT  400

seq1  GGCGTTCAGCACCGAGGACAGCTACACACCCGTGTTGGTGCCTCCTAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTTCAGCACCGAGGACAGCTACACACCCGTGTTGGTGCCTCCTAACT  450

seq1  GCCATTCAGCACCTAGGATAGCGGCAGGAATTCCTCTTTGGAAATCTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCAGCACCTAGGATAGCGGCAGGAATTCCTCTTTGGAAATCTAAG  500

seq1  CACACAGATGACTTTGAAAGGAGGCTTCAGAACCAGGGACGACTAGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGATGACTTTGAAAGGAGGCTTCAGAACCAGGGACGACTAGATGT  550

seq1  TGGTCTTAGGGCTTGCTCTATTGTGAGAAAATGTGGCATCTGCTGGGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTAGGGCTTGCTCTATTGTGAGAAAATGTGGCATCTGCTGGGTGC  600

seq1  CTGGGGTATTGCTTCAGCACCAAGGACAGCAGAAACCAATCCTGGAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTATTGCTTCAGCACCAAGGACAGCAGAAACCAATCCTGGAGAAG  650

seq1  CCCTGAAGGTCCAGGATGGCCTTCACAGGAGACTGAGGTGCTAACAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAGGTCCAGGATGGCCTTCACAGGAGACTGAGGTGCTAACAGAGG  700

seq1  TCAGACTTCCTGGCTGTCTCCAGGATTGGTAGCTGGTCCCTGGGAAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTTCCTGGCTGTCTCCAGGATTGGTAGCTGGTCCCTGGGAAGATG  750

seq1  GGATCTCTGAGAAAAGAGTGAGCAGTTGAGGGAACACGCACAGAAGCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCTGAGAAAAGAGTGAGCAGTTGAGGGAACACGCACAGAAGCAGG  800

seq1  AAGCCTGAAGTAGATCCATAGACAGGTCAGGAGCCTAGTAGGGACTGAGA  850
      ||||||||||||||||||||||||||||| |||||||||| |||||||||
seq2  AAGCCTGAAGTAGATCCATAGACAGGTCA-GAGCCTAGTA-GGACTGAGA  848

seq1  AGCAGGAGGGTGGGGCTTGAGAACATTTGGCTGATTGTAGGAGAGATCAG  900
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGCA-GAGGGTGGGGCTTGAGAACA-TTGGCTGATTGTAGGAGAGATCAG  896

seq1  ATGAATGATAGGAGCCAGCCTGACCATCTAAACTAGAGAAGCAGAGGGAA  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATGAATGATAGGAGCCAGCCTGACCATCTAAACTA-AGAAGCAGAGGGAA  945

seq1  AGGGGCCTTGAGGG-AGGAGCCTGAAGTAGTGTCTGTCTTTCCTAAGTGG  999
      | |||||||||||| |||||||||||||| |||||||||||||| |||||
seq2  A-GGGCCTTGAGGGAAGGAGCCTGAAGTA-TGTCTGTCTTTCCT-AGTGG  992

seq1  GG--TGTGT  1006
      ||  |||||
seq2  GGGTTGTGT  1001