BAC Information

Click to search

BAC

Clone NameB6Ng01-253G22
Chromosome7 (Build37)
Map Location 72,094,320 - 72,207,378
singlet/doubletdoublet
Overlap genenone
Upstream geneTrpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2, 5730507A09Rik, Ndnl2
Downstream geneTjp1, Gm1693, EG665234, Tarsl2, Tm2d3, LOC665241, Pcsk6, Snrpa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253G22.bB6Ng01-253G22.g
ACCGA060166GA060167
length1,049653
definitionB6Ng01-253G22.b B6Ng01-253G22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,206,353 - 72,207,378)(72,094,320 - 72,094,973)
sequence
gaattctccctagtgtttggacttctgaaaaggtgacatggttgcctgca
gtatcagccatggtacagggaggtggctggaggtgaggtagacagaactg
actacccagggggagggtgggagagatggctgcccagggtgaggatggga
tagatgcattggcagctgggacaaagcttgcacaggagttagtagcaagg
ccctggggactaaatgatgaccagctgacatgtgtcctgtgtcccctggg
acagggcacagcaggccccggatcttttgaattcactacccagtctcttc
atgtcctgcacctcacggtagacacagtaatggcagcacactgggggcac
actggggtgcttcttcacccacccagaggcctctgccttgttcttccaat
ggtcgtatgtatgctgtgattttctctgccgtgatagagagcttttattt
aactctgtaccaaccccttgatcttgtcagagactttataagtggttcag
agaaacccattcttctgctttcatagtcttactggctctaacataatctc
gaacctccatcgcttgctggaagtcagtgcttaagcacttctgacttctc
acagacatggactctgggaaaggagcaaacagcttccagggtggtgaaac
aatgtagctgtaaagaaatatagaggtggtgatttctctgtgcaattctg
tgacttgagccagtgtctctgggaatgtgttgaaggaaagccttctgagc
tagaagaaaatcttgtttttaaactttaatgtattttaaagggttttctt
tttctccttaaactttatttatttattttaaagtttttcctccttaaaac
ttatttatttaattatttttatttatttatgctcaggatgaaaagggaga
aaacaagggggcctcatacgtacatttcttcatccacctggcccttttct
ttgttccaaaagtttgactaacagaaaattaaattgtgggtccagggttt
aacgtggccgtacgttgtgaatattttcttgatccatatagtccataca
gaattcttttcatcaataatatacaggcagtcagacacacactacacatc
taggcacacccggacatgtctctctctctctctctctctctctctctctc
tctctctcactctacacacacacacacacacacacacacacacacacacc
cttccgggttaacatactccacacacaagctgccccttcctggtgtgcct
ttagcaggggacttttcctggatcacacacacctgtgctggctctgccag
ctacaaggtcagctaatgcctctgtggaattgtgtgttacttaggaacag
actctctgcctatgtgccaggggctctttgagttcccccacttctctgtg
tgcccagggtactctgtggtagattccctgtcagaggaccctgagcccct
ggcctttcccagggacaagtctgggtattgtgtacaaattcaagacaaca
gatcaatctgttccagcccatatgagcatcctttctattgcccttctgaa
aatcttcatgcatcctggcttgccctcctcgcttccttgacaatggtcta
gagatgatggaagacaaacatgagtgtggaaaatcttatggccctatgaa
ctctatgtctcagctcggctgtcacctcactctaccccctctgggagagc
ata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_72206353_72207378
seq2: B6Ng01-253G22.b_44_1092 (reverse)

seq1  TGTATGAACTATATG----ACAGAAATA-TCAC-ACGTAC-GCCACCTTA  43
      |||||| ||||||||    |   ||||| |||| |||||| ||||| |||
seq2  TGTATGGACTATATGGATCAAGAAAATATTCACAACGTACGGCCACGTTA  50

seq1  AA-CCTGGA-CCACAATT--AATTTCTGTTAGTCAAACTTTTGAAAC-AA  88
      || |||||| ||||||||  | ||||||||||||||||||||| ||| ||
seq2  AACCCTGGACCCACAATTTAATTTTCTGTTAGTCAAACTTTTGGAACAAA  100

seq1  GAAA--GGCCA-GTGGATGAAGAAATGTACGTATGAGG-CCCCTTGTTTT  134
      ||||  ||||| |||||||||||||||||||||||||| |||||||||||
seq2  GAAAAGGGCCAGGTGGATGAAGAAATGTACGTATGAGGCCCCCTTGTTTT  150

seq1  CTCCC-TTTCATCCTGAGCATAAATAAATAAAAATAATTAAATAAATAAG  183
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTTCATCCTGAGCATAAATAAATAAAAATAATTAAATAAATAAG  200

seq1  -TTTAAGGAGGAAAAACTTT-AAATAAATAAATAAAGTTTAAGGAG-AAA  230
       ||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  TTTTAAGGAGGAAAAACTTTAAAATAAATAAATAAAGTTTAAGGAGAAAA  250

seq1  AGAAAACCCTTT-AAATACATTAAAGTTT-AAAACAAGATTTTCTTCTAG  278
      |||||||||||| |||||||||||||||| ||||||||||||||||||||
seq2  AGAAAACCCTTTAAAATACATTAAAGTTTAAAAACAAGATTTTCTTCTAG  300

seq1  CTCAGAAGGC-TTCCTTCAACACATTCCCAGAGACACTGGCTCAAGTCAC  327
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAGGCTTTCCTTCAACACATTCCCAGAGACACTGGCTCAAGTCAC  350

seq1  AGAATTGCACAGAGAAATCACCACCTCTATATTTCTTTACAGCTACATTG  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGCACAGAGAAATCACCACCTCTATATTTCTTTACAGCTACATTG  400

seq1  TTTCACCACCCTGGAAGCTGTTTGCTCCTTTCCCAGAGTCCATGTCTGTG  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCACCCTGGAAGCTGTTTGCTCCTTTCCCAGAGTCCATGTCTGTG  450

seq1  AGAAGTCAGAAGTGCTTAAGCACTGACTTCCAGCAAGCGATGGAGGTTCG  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCAGAAGTGCTTAAGCACTGACTTCCAGCAAGCGATGGAGGTTCG  500

seq1  AGATTATGTTAGAGCCAGTAAGACTATGAAAGCAGAAGAATGGGTTTCTC  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATGTTAGAGCCAGTAAGACTATGAAAGCAGAAGAATGGGTTTCTC  550

seq1  TGAACCACTTATAAAGTCTCTGACAAGATCAAGGGGTTGGTACAGAGTTA  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCACTTATAAAGTCTCTGACAAGATCAAGGGGTTGGTACAGAGTTA  600

seq1  AATAAAAGCTCTCTATCACGGCAGAGAAAATCACAGCATACATACGACCA  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGCTCTCTATCACGGCAGAGAAAATCACAGCATACATACGACCA  650

seq1  TTGGAAGAACAAGGCAGAGGCCTCTGGGTGGGTGAAGAAGCACCCCAGTG  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGAACAAGGCAGAGGCCTCTGGGTGGGTGAAGAAGCACCCCAGTG  700

seq1  TGCCCCCAGTGTGCTGCCATTACTGTGTCTACCGTGAGGTGCAGGACATG  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCAGTGTGCTGCCATTACTGTGTCTACCGTGAGGTGCAGGACATG  750

seq1  AAGAGACTGGGTAGTGAATTCAAAAGATCCGGGGCCTGCTGTGCCCTGTC  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACTGGGTAGTGAATTCAAAAGATCCGGGGCCTGCTGTGCCCTGTC  800

seq1  CCAGGGGACACAGGACACATGTCAGCTGGTCATCATTTAGTCCCCAGGGC  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGACACAGGACACATGTCAGCTGGTCATCATTTAGTCCCCAGGGC  850

seq1  CTTGCTACTAACTCCTGTGCAAGCTTTGTCCCAGCTGCCAATGCATCTAT  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTACTAACTCCTGTGCAAGCTTTGTCCCAGCTGCCAATGCATCTAT  900

seq1  CCCATCCTCACCCTGGGCAGCCATCTCTCCCACCCTCCCCCTGGGTAGTC  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTCACCCTGGGCAGCCATCTCTCCCACCCTCCCCCTGGGTAGTC  950

seq1  AGTTCTGTCTACCTCACCTCCAGCCACCTCCCTGTACCATGGCTGATACT  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGTCTACCTCACCTCCAGCCACCTCCCTGTACCATGGCTGATACT  1000

seq1  GCAGGCAACCATGTCACCTTTTCAGAAGTCCAAACACTAGGGAGAATTC  1026
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAACCATGTCACCTTTTCAGAAGTCCAAACACTAGGGAGAATTC  1049

seq1: chr7_72094320_72094973
seq2: B6Ng01-253G22.g_67_718

seq1  GAATTCTTTTCATCAATAATATACAGGCAGTCAGACACACACTACACATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCATCAATAATATACAGGCAGTCAGACACACACTACACATC  50

seq1  TAGGCACACCCGGACATGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCACACCCGGACATGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  100

seq1  TCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACAC  150
      |||||||| ||||  |||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCACTCT-ACACACACACACACACACACACACACACACACACAC  149

seq1  CCTTCCAGGTAAACATAGTCCACACACAAGCAGCCCCTTCCTGGTGTGCC  200
      |||||| ||| |||||| ||||||||||||| ||||||||||||||||||
seq2  CCTTCCGGGTTAACATACTCCACACACAAGCTGCCCCTTCCTGGTGTGCC  199

seq1  TTTAGCAGGGGACTTTTCCTGGTTCACACACACCTGTGCTGGCTCTGCCA  250
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTAGCAGGGGACTTTTCCTGGATCACACACACCTGTGCTGGCTCTGCCA  249

seq1  GCTACAAGGTCAGCTAATGCCTCTGTGGACATTGTGTGTTACTTAGGAAC  300
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTACAAGGTCAGCTAATGCCTCTGTGGA-ATTGTGTGTTACTTAGGAAC  298

seq1  AGACTCTCTGCCCAGGTGCCATGTGCTCTTTGAGTTCCCAGACTTCTCTG  350
      |||||||||||| | |||||| | |||||||||||||||  |||||||||
seq2  AGACTCTCTGCCTATGTGCCAGGGGCTCTTTGAGTTCCCCCACTTCTCTG  348

seq1  TGTGCCCAGGGTTCTCTGTGGTAGATTCCCTGTCTGAGGACCCTGTGCCC  400
      |||||||||||| ||||||||||||||||||||| |||||||||| ||||
seq2  TGTGCCCAGGGTACTCTGTGGTAGATTCCCTGTCAGAGGACCCTGAGCCC  398

seq1  CTGGCCTTTCCCAGGGACAAGTCTGGGTATCCTGTACAAGTTCAGGTCAC  450
      ||||||||||||||||||||||||||||||  ||||||| |||| | || 
seq2  CTGGCCTTTCCCAGGGACAAGTCTGGGTATTGTGTACAAATTCAAGACAA  448

seq1  CAGATCATTCAAGTTCCAGCCCATATGAGCATCCTTACTAATGCCCTTCA  500
      ||||||| ||  |||||||||||||||||||||||| ||| |||||||| 
seq2  CAGATCAATC-TGTTCCAGCCCATATGAGCATCCTTTCTATTGCCCTTCT  497

seq1  GAGAATCTTCCAGCATCCTGGCTTGCCCTCCTTGCTTCCTTGTCTATGGT  550
      || |||||||  |||||||||||||||||||| ||||||||| | |||||
seq2  GAAAATCTTCATGCATCCTGGCTTGCCCTCCTCGCTTCCTTGACAATGGT  547

seq1  TTAGAGATGATGGAAAACCAAAATGAGTGTGGAGAGTTCTTATGGCCCTA  600
       |||||||||||||| || || ||||||||||| |  |||||||||||||
seq2  CTAGAGATGATGGAAGACAAACATGAGTGTGGA-AAATCTTATGGCCCTA  596

seq1  TGAACTCTAGGTCTCAGCTCGGCTGTCACCTCA-GCTA-CCCCTCTGGGA  648
      ||||||||| |||||||||||||||||||||||  ||| |||||||||||
seq2  TGAACTCTATGTCTCAGCTCGGCTGTCACCTCACTCTACCCCCTCTGGGA  646

seq1  GTGCAT  654
      | ||||
seq2  GAGCAT  652