BAC Information

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BAC

Clone NameB6Ng01-253N12
Chromosome7 (Build37)
Map Location 62,644,961 - 62,791,751
singlet/doubletdoublet
Overlap geneLOC668796
Upstream geneMrps33p, LOC622146, Luzp2
Downstream geneSiglech, Tubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959, Herc2, p
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253N12.bB6Ng01-253N12.g
ACCGA060466GA060467
length1,1171,035
definitionB6Ng01-253N12.b B6Ng01-253N12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,790,672 - 62,791,751)(62,644,961 - 62,645,996)
sequence
gaattcagtagagttcacagagagcagaacagtagaggagagagagagag
agagagagagagagagagagagagagagagagagagagagagagagagag
agagagagagaagagcagcacagagggaggaggcagttttccagggagat
ttttacaggagacagattaaaaagagaaaaagctagatacaaataaagcc
agaagaaccagcaagagaatgagaaggagccaggagattaggagagattt
ctagagttagttggaggccacgcagagcaattcagaggccaagagaaaag
gcagattaagtaagtcacctgggaaaggagtttgaggcagaacagctgag
ttgaaccagtgagtcagagctcacagaaagaactagaaagcgcaagctaa
ttcagcagtaagtctcagaggctgaaaacattctaggagtagattagatt
gtacagaggtgagaagcttccaggaataagcctcatagacaataattaca
gcagggaaataaatgtacacatatcaacatttccctgtctcttttctgca
tctgtaattcccgaataccctttgactcatgatctattctttgggctgct
ggtggtatagtgtgaaatagatctctcttttaaaaatcttctttcaaatg
tacttccagacttatatatcaatgaatctgtccacaagacacattttctc
tcaattaccccaattctaccacatgtcgtttctgtttttcactttgtttt
ttgtaacacataatgtaatttaacacattacattctgtatttatgtatta
acggtataaaacaaaatttcacttgaatccaagtaatttcactattgttt
ttgtcattgtttttgctttttatacttcttcacaacgatttatttcctgt
ttgacttttaaattatattccaactttagctaattatttgagaatgtcat
gacatgcatttctatcatttgtatccccagtaatatgccctaaattccct
cttagatctactcccaccactcttctaacgttgtgctttcttccctttta
attaccatttttatttacctttaaataaaacctgtaatattttcagtcca
tttccaatttccctccc
gaattcactgttacatgctgccaagtatctaaactcaaaatgatctagaa
caaaatggcattcaagtgataaaaacagaaattatttttttatattaaac
tacccttaagacttgggtaatgagtaaatatgatcttgttctgagcacaa
gagatgtgaagcccctgaagagaataggaaaacagtattttaaaattgtg
tcttatacatggataactccagtctgcatgttatatacttttaaggattg
tgtgcactcaagcccaactttggcaagaaatgtctgtgtgaagagcacac
tataaatttatatgtaaatttgagaagatttttaaaaatgttttcttttc
ttcttttcagatacgatcctgctatgcagtccaggctggctttgagttta
ggatgctcctcaatcccagtctcctgagcattgggaaggcaggtactacc
attcctgatgaaatttttgacagtattcaatatatagtatctctgagaat
accttggatttttggtgtgtatttgcggtatgtatgtgtgatagctagtg
ttttattgactcaacactagcttgagttatttgggaaagggaactcatct
gagaaaagtcctctcaccagggtggcttgttgggcattttattgattaat
gattgatatgggaggtcccagatcatcatgtgtgatatcaatcctggtca
ggcagtccagagttgtctaagaaagcaagagcactcctccaatgtctctg
cttgagttcctgcctccaggttcctatcttgaggtcctgccctgacttct
ctgtataatggactacaaactgtaaaagagaataaatgttttcctcccca
agttggctttggttctggtatttcatcacaggaaatcacaagaaaaccta
acagagaaaaaaaaaatgttattcaaagaacagactgttatcattttcaa
acctgatcatgttttagataggactgtggaggactttgaaactttgggca
agaaagccattaatttcagagcttatgaggtgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_62790672_62791751
seq2: B6Ng01-253N12.b_61_1161 (reverse)

seq1  GGGAGG--AAATGGAAATGGGACTGATATAATTACAG--TTTATTTAAA-  45
      ||||||  || ||||||| ||||||| |  |||||||  |||||||||| 
seq2  GGGAGGGAAATTGGAAAT-GGACTGAAAATATTACAGGTTTTATTTAAAG  49

seq1  GTAAAT-AAAATGGTATTTAAAA-GGAAGAAAGCACAACGTTAGAAGAAG  93
      |||||| ||||||||| |||||| ||||||||||||||||||||||||  
seq2  GTAAATAAAAATGGTAATTAAAAGGGAAGAAAGCACAACGTTAGAAGAGT  99

seq1  TGT-GGAGTAGATCTAAGAGG--ATTTA-GGCATATTACTGGGGATACAA  139
       || |||||||||||||||||  ||||| |||||||||||||||||||||
seq2  GGTGGGAGTAGATCTAAGAGGGAATTTAGGGCATATTACTGGGGATACAA  149

seq1  ATGATAGAAATGCATGTCATGACATTCTCAAATAATTA-CTAAAGTTG--  186
      |||||||||||||||||||||||||||||||||||||| |||||||||  
seq2  ATGATAGAAATGCATGTCATGACATTCTCAAATAATTAGCTAAAGTTGGA  199

seq1  ATATATTTTAAAAGTC-AACAGGAAATAAATC-TTGTG-AGAAGTAT-AA  232
      ||||| |||||||||| ||||||||||||||| ||||| |||||||| ||
seq2  ATATAATTTAAAAGTCAAACAGGAAATAAATCGTTGTGAAGAAGTATAAA  249

seq1  AAGC-AAAACAATGACAAAAACAATAGTG-AATTACTTGGTTTCAAGTG-  279
      |||| |||||||||||||||||||||||| |||||||||| |||||||| 
seq2  AAGCAAAAACAATGACAAAAACAATAGTGAAATTACTTGGATTCAAGTGA  299

seq1  AATTTTGTTTTATACCGTTAATACATAAATACAGAATGTAATGTGTTAAA  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTTTTATACCGTTAATACATAAATACAGAATGTAATGTGTTAAA  349

seq1  TTACATTATGTGTTAC-AAAAACAAAGTGAAAAACAGAAACGACATGTGG  378
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTACATTATGTGTTACAAAAAACAAAGTGAAAAACAGAAACGACATGTGG  399

seq1  TAGAATTGGGGTAATTGAGAGAAAATGTGTCTTGTGGACAGATTCATTGA  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTGGGGTAATTGAGAGAAAATGTGTCTTGTGGACAGATTCATTGA  449

seq1  TATATAAGTCTGGAAGTACATTTGAAAGAAGATTTTTAAAAGAGAGATCT  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAGTCTGGAAGTACATTTGAAAGAAGATTTTTAAAAGAGAGATCT  499

seq1  ATTTCACACTATACCACCAGCAGCCCAAAGAATAGATCATGAGTCAAAGG  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACACTATACCACCAGCAGCCCAAAGAATAGATCATGAGTCAAAGG  549

seq1  GTATTCGGGAATTACAGATGCAGAAAAGAGACAGGGAAATGTTGATATGT  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCGGGAATTACAGATGCAGAAAAGAGACAGGGAAATGTTGATATGT  599

seq1  GTACATTTATTTCCCTGCTGTAATTATTGTCTATGAGGCTTATTCCTGGA  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTTATTTCCCTGCTGTAATTATTGTCTATGAGGCTTATTCCTGGA  649

seq1  AGCTTCTCACCTCTGTACAATCTAATCTACTCCTAGAATGTTTTCAGCCT  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTCACCTCTGTACAATCTAATCTACTCCTAGAATGTTTTCAGCCT  699

seq1  CTGAGACTTACTGCTGAATTAGCTTGCGCTTTCTAGTTCTTTCTGTGAGC  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACTTACTGCTGAATTAGCTTGCGCTTTCTAGTTCTTTCTGTGAGC  749

seq1  TCTGACTCACTGGTTCAACTCAGCTGTTCTGCCTCAAACTCCTTTCCCAG  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCACTGGTTCAACTCAGCTGTTCTGCCTCAAACTCCTTTCCCAG  799

seq1  GTGACTTACTTAATCTGCCTTTTCTCTTGGCCTCTGAATTGCTCTGCTTG  828
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTGACTTACTTAATCTGCCTTTTCTCTTGGCCTCTGAATTGCTCTGCGTG  849

seq1  GCCTCCAACTAACTCTAGAAATCTCTCCTAATCTCCTGGCTCCTTCTCAT  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAACTAACTCTAGAAATCTCTCCTAATCTCCTGGCTCCTTCTCAT  899

seq1  TCTCTTGCTGGTTCTTCTGGCTTTATTTGTATCTAGCTTTTTCTCTTTTT  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGCTGGTTCTTCTGGCTTTATTTGTATCTAGCTTTTTCTCTTTTT  949

seq1  AATCTGTCTCCTGTAAAAATCTCCCTGGAAAACTGCCTCCTCCCTCTGTG  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTCTCCTGTAAAAATCTCCCTGGAAAACTGCCTCCTCCCTCTGTG  999

seq1  CTGCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  1049

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTACTGTTCTGCTCTCT  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTACTGTTCTGCTCTCT  1099

seq1  GT  1080
      ||
seq2  GT  1101

seq1: chr7_62644961_62645996
seq2: B6Ng01-253N12.g_67_1101

seq1  GAATTCACTGTTACATGCTGCCAAGTATCTAAACTCAAAATGATCTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTTACATGCTGCCAAGTATCTAAACTCAAAATGATCTAGAA  50

seq1  CAAAATGGCATTCAAGTGATAAAAACAGAAATTATTTTTTTATATTAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGCATTCAAGTGATAAAAACAGAAATTATTTTTTTATATTAAAC  100

seq1  TACCCTTAAGACTTGGGTAATGAGTAAATATGATCTTGTTCTGAGCACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTAAGACTTGGGTAATGAGTAAATATGATCTTGTTCTGAGCACAA  150

seq1  GAGATGTGAAGCCCCTGAAGAGAATAGGAAAACAGTATTTTAAAATTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTGAAGCCCCTGAAGAGAATAGGAAAACAGTATTTTAAAATTGTG  200

seq1  TCTTATACATGGATAACTCCAGTCTGCATGTTATATACTTTTAAGGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATACATGGATAACTCCAGTCTGCATGTTATATACTTTTAAGGATTG  250

seq1  TGTGCACTCAAGCCCAACTTTGGCAAGAAATGTCTGTGTGAAGAGCACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACTCAAGCCCAACTTTGGCAAGAAATGTCTGTGTGAAGAGCACAC  300

seq1  TATAAATTTATATGTAAATTTGAGAAGATTTTTAAAAATGTTTTCTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTTATATGTAAATTTGAGAAGATTTTTAAAAATGTTTTCTTTTC  350

seq1  TTCTTTTCAGATACGATCCTGCTATGCAGTCCAGGCTGGCTTTGAGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCAGATACGATCCTGCTATGCAGTCCAGGCTGGCTTTGAGTTTA  400

seq1  GGATGCTCCTCAATCCCAGTCTCCTGAGCATTGGGAAGGCAGGTACTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTCCTCAATCCCAGTCTCCTGAGCATTGGGAAGGCAGGTACTACC  450

seq1  ATTCCTGATGAAATTTTTGACAGTATTCAATATATAGTATCTCTGAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGATGAAATTTTTGACAGTATTCAATATATAGTATCTCTGAGAAT  500

seq1  ACCTTGGATTTTTGGTGTGTATTTGCGGTATGTATGTGTGATAGCTAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGATTTTTGGTGTGTATTTGCGGTATGTATGTGTGATAGCTAGTG  550

seq1  TTTTATTGACTCAACACTAGCTTGAGTTATTTGGGAAAGGGAACTCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGACTCAACACTAGCTTGAGTTATTTGGGAAAGGGAACTCATCT  600

seq1  GAGAAAAGTCCTCTCACCAGGGTGGCTTGTTGGGCATTTTATTGATTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGTCCTCTCACCAGGGTGGCTTGTTGGGCATTTTATTGATTAAT  650

seq1  GATTGATATGGGAGGTCCCAGATCATCATGTGTGATATCAATCCTGGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATATGGGAGGTCCCAGATCATCATGTGTGATATCAATCCTGGTCA  700

seq1  GGCAGTCCAGAGTTGTCTAAGAAAGCAAGAGCACTCCTCCAATGTCTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCCAGAGTTGTCTAAGAAAGCAAGAGCACTCCTCCAATGTCTCTG  750

seq1  CTTGAGTTCCTGCCTCCAGGTTCCTATCTTGAGGTCCTGCCCTGACTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTTCCTGCCTCCAGGTTCCTATCTTGAGGTCCTGCCCTGACTTCT  800

seq1  CTGTATAATGGACTACAAACTGTAAAAGAGAATAAATGTTTTCCTCCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAATGGACTACAAACTGTAAAAGAGAATAAATGTTTTCCTCCCCA  850

seq1  AGTTGGCTTTGGTTCTGGTATTTCATCACAGGAAATCACAAGAAAACCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCTTTGGTTCTGGTATTTCATCACAGGAAATCACAAGAAAACCTA  900

seq1  ACAGAGAAAAAAAAAAGGT--ATCAAAGAACAGACTGTTATCA-TTTCAA  947
      |||||||||||||||| ||   ||||||||||||||||||||| ||||||
seq2  ACAGAGAAAAAAAAAATGTTATTCAAAGAACAGACTGTTATCATTTTCAA  950

seq1  ACCTGATCATGTTTTAGATAGGACTGTGGAAGGACTTTGAAACTTTGGGC  997
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACCTGATCATGTTTTAGATAGGACTGTGG-AGGACTTTGAAACTTTGGGC  999

seq1  AAGGAAAGCCATTAAATTTCAGAGCTTAATGAGGTGTTT  1036
      || |||||||||| ||||||||||||| |||||||||||
seq2  AA-GAAAGCCATT-AATTTCAGAGCTT-ATGAGGTGTTT  1035