BAC Information

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BAC

Clone NameB6Ng01-253O11
Chromosome11 (Build37)7 (Build37)
Map Location 42,566,311 - 42,566,654104,172,173 - 104,172,547
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGabrg2, Gabra1, Gabra6, Gabrb2
Downstream geneAtp10b, EG544767, Pttg1, Slu7, LOC100039392, C1qtnf2, Ccnjl, Fabp6, LOC620562, 4631424J17Rik, Ttc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253O11.bB6Ng01-253O11.g
ACCGA060511GA060512
length405370
definitionB6Ng01-253O11.b B6Ng01-253O11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(42,566,311 - 42,566,654)(104,172,173 - 104,172,547)
sequence
gaattctgccataatctgagtattattgagagtcaggtgtaaagcttttt
aaagcaaattttgttgttttttaaaattttttttcttttttttttattac
gtattttcctcaattacatttccaatgctatcccaaaagtcccccacacc
ctccccccccccactcccctacccaccctttcccattttttggccctggc
attcccctgtactggggcatataaagtttgcctgaccaatgggcctctct
ttccagtgatggccgactaggccatgttttgatacatatgcagctagagt
caagagctctggggtactggttagttcataatgttgttccaccgataggg
ttgcagatctctttagctccttggatacattctctagctcctccattggg
ggccc
tcagagccggagacacctggctgaattttatatggttgaagcggagattt
cttttgttgaaagccttcaggatctcatgcaggtaggtatacagtttgtc
atttccaggaatctgacattgtagtacttctgcattatagagatttatgg
ggtggagaaaataggaatccatttaattagtataccttaatttctacttc
acagagcagttgaaatcaggcagaggtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtatctgactgataacttactaattactcagaaaaaattaa
ctgttactattttaaattctatcagtaatatttgggtagttctcttagtt
tggatttataatgttcaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_42566311_42566654
seq2: B6Ng01-253O11.b_125_452 (reverse)

seq1  GGGCCCCCAATGGAGGAGCTAGAGAAAGTATCCCAGGAGCTAAAGAGATC  50
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  GGGCCCCCAATGGAGGAGCTAGAGAATGTATCCAAGGAGCTAAAGAGATC  50

seq1  TGCAACCCTGTAGGTGCAACAACATTATGAACTAACCAGTACCCCGGAGC  100
      ||||||||| | |||| |||||||||||||||||||||||||||| ||||
seq2  TGCAACCCTATCGGTGGAACAACATTATGAACTAACCAGTACCCCAGAGC  100

seq1  TCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCAAGTCGGCCATCAC  150
      ||||||||||||||||||||||||||||| |||||| |||||||||||||
seq2  TCTTGACTCTAGCTGCATATGTATCAAAACATGGCCTAGTCGGCCATCAC  150

seq1  TGGAAAGAGAGGCCCATTGGACACGCAAACTTTATATGCCCCAGTACAGG  200
      |||||||||||||||||||| || ||||||||||||||||||||||||||
seq2  TGGAAAGAGAGGCCCATTGGTCAGGCAAACTTTATATGCCCCAGTACAGG  200

seq1  GGAACACCAGGGCCAAAAAATGGGAATGGGTGAGTAGGGAAGT----GGG  246
      ||||  |||||||||||||||||||| ||||| |||||| |||    |||
seq2  GGAATGCCAGGGCCAAAAAATGGGAAAGGGTGGGTAGGGGAGTGGGGGGG  250

seq1  GGGAGGGTATGGGGGACTTTTGGGATAGCATTGGAAATGTAATTGAGGAA  296
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGTGTGGGGGACTTTTGGGATAGCATTGGAAATGTAATTGAGGAA  300

seq1  AATACATAATAAAAAATATTAAAGAAATATAAAAAAAAAAGAAAAAAA  344
      ||||| ||                    ||||||||||||||||||||
seq2  AATACGTA--------------------ATAAAAAAAAAAGAAAAAAA  328

seq1: chr7_104172173_104172547
seq2: B6Ng01-253O11.g_67_442

seq1  GAATTCTCAGAGCCGGAGACACCTGGCTGAATTTTATATGGTTGAAGCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAGCCGGAGACACCTGGCTGAATTTTATATGGTTGAAGCGG  50

seq1  AGATTTCTTTTGTTGAAAGCCTTCAGGATCTCATGCAGGTAGGTATACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCTTTTGTTGAAAGCCTTCAGGATCTCATGCAGGTAGGTATACAG  100

seq1  TTTGTCATTTCCAGGAATCTGACATTGTAGTACTTCTGCATTATAGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCATTTCCAGGAATCTGACATTGTAGTACTTCTGCATTATAGAGAT  150

seq1  TTATGGGGTGGAGAAAATAGGAATCCATTTAATTAGTATACCTTAATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGGTGGAGAAAATAGGAATCCATTTAATTAGTATACCTTAATTTC  200

seq1  TACTTCACAGAGCAGTTGAAATCAGGCAGAGGTGTGTGTGTGTGTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCACAGAGCAGTTGAAATCAGGCAGAGGTGTGTGTGTGTGTGTGTG  250

seq1  TGTGTGTGTGTGTGTGTATCTGACTGATAACTTACTAATTACTCAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTATCTGACTGATAACTTACTAATTACTCAGAAAA  300

seq1  AATTAACTGTTACTATTTTAAATTCTATCAGTAATATTTGGGTAG-TCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATTAACTGTTACTATTTTAAATTCTATCAGTAATATTTGGGTAGTTCTC  350

seq1  TTAGTTTGGATTTATAATGTTCAATT  375
      ||||||||||||||||||||||||||
seq2  TTAGTTTGGATTTATAATGTTCAATT  376