BAC Information

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BAC

Clone NameB6Ng01-254G20
Chromosome7 (Build37)
Map Location 116,093,206 - 116,094,409
singlet/doubletsinglet
Overlap geneBC049265
Upstream geneLOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5
Downstream geneTub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254G20.bB6Ng01-254G20.g
ACCGA060894GA060895
length1,1981,208
definitionB6Ng01-254G20.b B6Ng01-254G20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgctggtagctctgggcgctcacgcccgcatcttctttgagca
cgcgcgttagcggcacccacgcggagccaacccgaggtaccgggagaagc
tcatcttcccagcacgctccttacctgtcgtagctccagcggctgtagga
cagggtgcggtggctgctcactccctccatcgcggtcctggactgggctt
ggggctccacgggcggcggctgcgcggggctcggtgctcgctcactcgcg
gcgggcccggctggggcgcgggcggaggactgtaccattcgcccccccgg
gggtgaccccctcctgtctccgccaatggcgagggcgcacgggctgcggg
gacccggacccgaggggggtcccctcccctgcgcgcctgtcccgcggggg
cgcggctgcggcaactagactgcttatttatttatttccgatgtgtgctc
ctcgttgccatggcaaccgctccatcttttccggcgtcggtaaagcaccg
ctgattttaaaccttaccaggacagagatggctaagaggttgcgctttct
gcttgcttggggaatcccggatgcgctctccctcttctgcagagatgtgc
cggctccaccctcaacagaaaaacctctgtgatttccttgattcctgagt
tctcctggtccatgtcttcccagcacagaactcttggagcaaagttactc
ttcaatcacaatgtctctttctttgcttgcagggaatggaaatccactcc
tgctgccatcttccctcactgtatttcccaggcccacaatctagttcttt
tggctctcattatgattcacagagccagagaaccaaggtctgttaacact
cccatttctagagcatctctttctgtttatgttcctttgtgctttttttt
ttttttcattaacaccacaaatccttttggaaaattggctcatccgaata
gggatcaaagggagtgcacacagattttcccttctcacagggaatatctg
agaattttgttataactgtgcttcaaaactgtcagtcctcctgtagaaag
cctgacacatgacaagtcagggttctttctttgggcctgctagccatccc
acggctggcctgaaaaccttctgtgctgatgttcaggatagctttctagc
tgaatcagacacctagctttgacttgtttttccaagagaatcctatct
gaattctttgtttagttctgagccccatttttttatatttaaatattttt
ttatttcatactttcctcaattacatttccaatgctatcccaaaagtccc
ccataaactcccccccactcccctacccacccactcccactctttggccc
tggcgttcccctgtattggctgagtcccattttttaataaggttatttga
ttttctggagtccacgttcttgagttctttatatatattggatattagtc
cctatctaatttaggataggtaaagatactttcccaatctgctggtggcc
tttttgtcttattgatggtgtcttttgccttgcaaaagctttgcaatttt
atgagatcccatttgtcaattctccatcttaaagcacaagccattgctgt
tctattcaggaatttttcccctgtgcccttatcttcaaggcttttcccca
ctttctcctctataattttcagtatctctggttttatgtggagttcctta
atccacttaaatttgaccttagtacaaggagataggaatggatcaatttg
cattcttctacatgataaccaccagttgtgccagcaccatttgttgaaaa
tgctgtcttttttccactgtatggtttttgctcccttgtcaaagatcata
ctgaacatagatatgtgggttcatttctgggtcttcaattctattccatt
ggtctacttgtctgtcactaagccagtaccatgcagtttttatcacaatt
gctctgtagtacagctttaggtcaggcatggtgattccaccagaggttct
tttatccttgagaagagtttttgctatgctagggtttttggcattccaga
tgaatttggcagatcgctctttctaattcgttgaggaattgagtttgaat
tttgatgggggattgcattgaatctatagattgctttggtaagatagcca
tttttattatatgatctggccaatccatggagatgggagatcttccatct
ctgagatcttctttaatttctttccttcaggaggacttgaaggttctatc
ataacaggatcttcactccttagttaggagtccacatcaaggaatattca
taatactggtggccctatggggagggtggtgtgttccttactttcttcca
gtccggtatctggggagagaaaaggccatggaactggttgggagataaat
ttatatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_116093206_116094409
seq2: B6Ng01-254G20.b_43_1240 (reverse)

seq1  AGATAG----ATCTTG--AAAACAAGTTCAAAGCTAGGTGTCCTGATTCA  44
      ||||||     |||||  |||||||| |||||||||||||| ||||||||
seq2  AGATAGGATTCTCTTGGAAAAACAAG-TCAAAGCTAGGTGT-CTGATTCA  48

seq1  GCTCTAGAGAAGGCTGTACCCTGGACATCAGCACAGA--GTTCTCAGCCA  92
      |||    |||| ||  || |||| |||||||||||||  ||| |||| | 
seq2  GCT----AGAAAGC--TATCCTGAACATCAGCACAGAAGGTTTTCAGGCC  92

seq1  GGCCGGTGGGATTGCCTAGCAAGGCCCCAAAGAAAGGACCCTTGACCTTT  142
       ||| |||||| || ||||||  | ||||||||||| |||| ||||  ||
seq2  AGCC-GTGGGA-TGGCTAGCA--GGCCCAAAGAAAGAACCC-TGAC--TT  135

seq1  GTCATTGTGTCA-GCTTTCTACAGGAGGAACCTGACAGTTTTGAAGCACA  191
      |||| ||||||| ||||||||||||||||  |||||||||||||||||||
seq2  GTCA-TGTGTCAGGCTTTCTACAGGAGGA--CTGACAGTTTTGAAGCACA  182

seq1  GTTAT-ACAAAA-TCTCAGATATTCCCCTTGTTGAGAA-GGAAAATCTGT  238
      ||||| |||||| ||||||||||||||  || |||||| |||||||||||
seq2  GTTATAACAAAATTCTCAGATATTCCC--TG-TGAGAAGGGAAAATCTGT  229

seq1  GTGCACTCCCTTTGAT-CCTATTCGGATGAGCCAATTTTCC-AAAGGATT  286
      |||||||||||||||| |||||||||||||||||||||||| ||||||||
seq2  GTGCACTCCCTTTGATCCCTATTCGGATGAGCCAATTTTCCAAAAGGATT  279

seq1  TGTGGTGTTAATG-AAAAAAAAAAAAAGCACAAAGGAACATAAACAGAAA  335
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGTTAATGAAAAAAAAAAAAAAGCACAAAGGAACATAAACAGAAA  329

seq1  GAGATGCTCTAGAAATGGGAGTGTTAACAGACCTTGGTTCTCTGGCTCTG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCTCTAGAAATGGGAGTGTTAACAGACCTTGGTTCTCTGGCTCTG  379

seq1  TGAATCATAATGAGAGCCAAAAGAACTAGATTGTGGGCCTGGGAAATACA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCATAATGAGAGCCAAAAGAACTAGATTGTGGGCCTGGGAAATACA  429

seq1  GTGAGGGAAGATGGCAGCAGGAGTGGATTTCCATTCCCTGCAAGCAAAGA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGAAGATGGCAGCAGGAGTGGATTTCCATTCCCTGCAAGCAAAGA  479

seq1  AAGAGACATTGTGATTGAAGAGTAACTTTGCTCCAAGAGTTCTGTGCTGG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACATTGTGATTGAAGAGTAACTTTGCTCCAAGAGTTCTGTGCTGG  529

seq1  GAAGACATGGACCAGGAGAACTCAGGAATCAAGGAAATCACAGAGGTTTT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACATGGACCAGGAGAACTCAGGAATCAAGGAAATCACAGAGGTTTT  579

seq1  TCTGTTGAGGGTGGAGCCGGCACATCTCTGCAGAAGAGGGAGAGCGCATC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGAGGGTGGAGCCGGCACATCTCTGCAGAAGAGGGAGAGCGCATC  629

seq1  CGGGATTCCCCAAGCAAGCAGAAAGCGCAACCTCTTAGCCATCTCTGTCC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGATTCCCCAAGCAAGCAGAAAGCGCAACCTCTTAGCCATCTCTGTCC  679

seq1  TGGTAAGGTTTAAAATCAGCGGTGCTTTACCGACGCCGGAAAAGATGGAG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGGTTTAAAATCAGCGGTGCTTTACCGACGCCGGAAAAGATGGAG  729

seq1  CGGTTGCCATGGCAACGAGGAGCACACATCGGAAATAAATAAATAAGCAG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTGCCATGGCAACGAGGAGCACACATCGGAAATAAATAAATAAGCAG  779

seq1  TCTAGTTGCCGCAGCCGCGCCCCCGCGGGACAGGCGCGCAGGGGAGGGGA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTGCCGCAGCCGCGCCCCCGCGGGACAGGCGCGCAGGGGAGGGGA  829

seq1  CCCCCCTCGGGTCCGGGTCCCCGCAGCCCGTGCGCCCTCGCCATTGGCGG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCTCGGGTCCGGGTCCCCGCAGCCCGTGCGCCCTCGCCATTGGCGG  879

seq1  AGACAGGAGGGGGTCACCCCCGGGGGGGCGAATGGTACAGTCCTCCGCCC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGAGGGGGTCACCCCCGGGGGGGCGAATGGTACAGTCCTCCGCCC  929

seq1  GCGCCCCAGCCGGGCCCGCCGCGAGTGAGCGAGCACCGAGCCCCGCGCAG  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCCCAGCCGGGCCCGCCGCGAGTGAGCGAGCACCGAGCCCCGCGCAG  979

seq1  CCGCCGCCCGTGGAGCCCCAAGCCCAGTCCAGGACCGCGATGGAGGGAGT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCGCCCGTGGAGCCCCAAGCCCAGTCCAGGACCGCGATGGAGGGAGT  1029

seq1  GAGCAGCCACCGCACCCTGTCCTACAGCCGCTGGAGCTACGACAGGTAAG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCCACCGCACCCTGTCCTACAGCCGCTGGAGCTACGACAGGTAAG  1079

seq1  GAGCGTGCTGGGAAGATGAGCTTCTCCCGGTACCTCGGGTTGGCTCCGCG  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGTGCTGGGAAGATGAGCTTCTCCCGGTACCTCGGGTTGGCTCCGCG  1129

seq1  TGGGTGCCGCTAACGCGCGTGCTCAAAGAAGATGCGGGCGTGAGCGCCCA  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCCGCTAACGCGCGTGCTCAAAGAAGATGCGGGCGTGAGCGCCCA  1179

seq1  GAGCTACCAGCATGAATTC  1204
      |||||||||||||||||||
seq2  GAGCTACCAGCATGAATTC  1198