BAC Information

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BAC

Clone NameB6Ng01-254M14
Chromosome7 (Build37)
Map Location 69,404,507 - 69,563,580
singlet/doubletdoublet
Overlap geneNdn, Magel2, Mkrn3
Upstream geneLOC100041259, EG664943, B230209E15Rik, EG620934, LOC100041293
Downstream genePeg12, Atp5l-ps1, EG665038, LOC669222, LOC384631, LOC622243, EG622251, Chrna7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254M14.bB6Ng01-254M14.g
ACCGA061162GA061163
length1,1411,158
definitionB6Ng01-254M14.b B6Ng01-254M14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,404,507 - 69,405,642)(69,562,444 - 69,563,580)
sequence
gaattcacactgattttagattcataataatgtcaactgttatttaaatt
ttatttattttaatagatacagaacagaagtgtaatatggtcacatctga
tattttccctatatgtttacactatcaaagaaagctggttgccatatcca
tagacacaaggacttgtaggaaaacattttatatgtagtttcttagtact
tttgagtatacattaaaagtatgggaccatgcttaccaatagattggtaa
taaataaataaaaatccttatatatatttttctggaagacattttttaaa
aactattttgaataatactgatttgtttgcccatccctttttcagccact
ggtaaccatcattcttcatttgttttcatgaatttcaattttagatgttt
catgtatcagagtgttgatctttcagtacctgcattacataagcataatg
tcttccagatccaagcacacttttgttgtttaaagtctgaaaagcccacc
gtgattataaagaccattatcttctttgtccttcactgacagcaatctca
gtagcataaacatccttttattgtgaggaatgctgtgatgaacagagcta
aaaaattttcctgagattctgatattccattaggataaactgcctattga
gattgttgagacatacaatgtcctcttttcagccctttgagaggatactg
tactattatctataatttactgtctcaactcagaatcctgatgacaaaag
tataaactttccttttctgaactaacagactatcagagttccatccccca
gaagccacataagatggaaaacatcagctgaattcattaacttttctctt
gactcctccataaatgcaccctacatattgtgcatgttgctttgagtaaa
taaaaatttaaacttaaagatttgcttttcttcatatgtttgccaatatt
tataatcatttacctatgctgtttgctgaatgccttctcatttgttgtgt
ttgggataccagaggttaaagctagtggccataagaatgcagcctttact
gggtgttccttatcctattctattttggtgaatttctattttatgctaag
ttttatagtgttttacctacccatcttggtaaatatatttg

gaattctgtttttacaatgcatgaataccccgagggctggagagatcagc
ctccaagaccagatggtggtggatcatcaagcgcatactggcatcaagtt
ttggagcctgtgcagttgcgagagggaaacgtgctgtttaaaagccgtaa
aaaagagcattctgtgcttcgcctggccaatcagttgcttaagaagttgc
tttgcctgagaggcagttcttccttctctgatgaccgttggctcttgctt
cagtaccagctggaagaatatttcagtttgaatctgtagtatcacgctgt
ggcatgtggtctggtctgctaaagctctgttgtctgctgttgcttattcc
cctttattgactgaaaaaccctatcgctttcaaaggctactgaggcaatc
tttatgcagtattgctgttttcttctctatttcctatttcttcttgctag
gattgtgatgtttctctgtgttacaaaataacaagaaatcttataagtat
tgtttggtggaattaatatttctgtcaactgatgacttgtgatgtctttt
ttccaacaggattcaatcacttctagtctagtgtttacagtttctcattg
tgaagtcccttaagagtaaatgtgacaaggtgacaaaagtctttaactga
attatgagctttttgctatatagccttaaaaaaaatggacccttacagga
ccttgcagctgctgtctgtgtttgtttacatgtttgtttcttcccttctc
tttcaagtgcacttgttaacttgtggttactttgtggttctgttttactt
gaccaaaatgaggtgcatatgtttacatgtttttatcctgtttggcttga
tgtgaaattatttatatttggaaatatatatttaagaatgatatatatgc
gtatatgtatacaaagatgtatttgaaaaactggaaataaatattacacc
atatattatatgtttgaagtattgaaaataaatgcaagaactgaaagccc
aagttgttaaagtccagtgttgttgggctgtaatgttgaaattgtggttg
gaatatcttgcccttgcactgatgtcagttgatttagcatctaattaaaa
tgtactgtcttaagtgttgaattctgactctttttttttattggatttta
caaaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_69404507_69405642
seq2: B6Ng01-254M14.b_46_1186

seq1  GAATTCACACTGATTTTAGATTCATAATAATGTCAACTGTTATTTAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTGATTTTAGATTCATAATAATGTCAACTGTTATTTAAATT  50

seq1  TTATTTATTTTAATAGATACAGAACAGAAGTGTAATATGGTCACATCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTTAATAGATACAGAACAGAAGTGTAATATGGTCACATCTGA  100

seq1  TATTTTCCCTATATGTTTACACTATCAAAGAAAGCTGGTTGCCATATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCCTATATGTTTACACTATCAAAGAAAGCTGGTTGCCATATCCA  150

seq1  TAGACACAAGGACTTGTAGGAAAACATTTTATATGTAGTTTCTTAGTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACAAGGACTTGTAGGAAAACATTTTATATGTAGTTTCTTAGTACT  200

seq1  TTTGAGTATACATTAAAAGTATGGGACCATGCTTACCAATAGATTGGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTATACATTAAAAGTATGGGACCATGCTTACCAATAGATTGGTAA  250

seq1  TAAATAAATAAAAATCCTTATATATATTTTTCTGGAAGACATTTTTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAAAATCCTTATATATATTTTTCTGGAAGACATTTTTTAAA  300

seq1  AACTATTTTGAATAATACTGATTTGTTTGCCCATCCCTTTTTCAGCCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTTTGAATAATACTGATTTGTTTGCCCATCCCTTTTTCAGCCACT  350

seq1  GGTAACCATCATTCTTCATTTGTTTTCATGAATTTCAATTTTAGATGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACCATCATTCTTCATTTGTTTTCATGAATTTCAATTTTAGATGTTT  400

seq1  CATGTATCAGAGTGTTGATCTTTCAGTACCTGCATTACATAAGCATAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATCAGAGTGTTGATCTTTCAGTACCTGCATTACATAAGCATAATG  450

seq1  TCTTCCAGATCCAAGCACACTTTTGTTGTTTAAAGTCTGAAAAGCCCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGATCCAAGCACACTTTTGTTGTTTAAAGTCTGAAAAGCCCACC  500

seq1  GTGATTATAAAGACCATTATCTTCTTTGTCCTTCACTGACAGCAATCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTATAAAGACCATTATCTTCTTTGTCCTTCACTGACAGCAATCTCA  550

seq1  GTAGCATAAACATCCTTTTATTGTGAGGAATGCTGTGATGAACAGAGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCATAAACATCCTTTTATTGTGAGGAATGCTGTGATGAACAGAGCTA  600

seq1  AAAAATTTTCCTGAGATTCTGATATTCCATTAGGATAAACTGCCTATTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTTCCTGAGATTCTGATATTCCATTAGGATAAACTGCCTATTGA  650

seq1  GATTGTTGAGACATACAATGTCCTCTTTTCAGCCCTTTGAGAGGATACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTGAGACATACAATGTCCTCTTTTCAGCCCTTTGAGAGGATACTG  700

seq1  TACTATTATCTATAATTTACTGTCTCAACTCAGAATCCTGATGACAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTATCTATAATTTACTGTCTCAACTCAGAATCCTGATGACAAAAG  750

seq1  TATAAACTTTCCTTTTCTGAACTAACAGACTATCAGAGTTCCATCCCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACTTTCCTTTTCTGAACTAACAGACTATCAGAGTTCCATCCCCCA  800

seq1  GAAGCCACATAAGATGGAAAACATCAGCTGAATTCATTAACTTTTCTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCACATAAGATGGAAAACATCAGCTGAATTCATTAACTTTTCTCTT  850

seq1  GACTCCTCCATAAATGCACCCTACATATTGTGCATG-TGCTTTGAGTAAA  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GACTCCTCCATAAATGCACCCTACATATTGTGCATGTTGCTTTGAGTAAA  900

seq1  TAAAAATTTAAAACTTAAAGATTTGCTTTTCTTCATATGTTTGCCAATAT  949
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTT-AAACTTAAAGATTTGCTTTTCTTCATATGTTTGCCAATAT  949

seq1  TTATAATCATTTACCTATGCTGTTTGCTGAATGCTTTCTCA-TTGTTGTG  998
      |||||||||||||||||||||||||||||||||| |||||| ||||||||
seq2  TTATAATCATTTACCTATGCTGTTTGCTGAATGCCTTCTCATTTGTTGTG  999

seq1  TTT-GGATACCAGAGGTAAAAGCTAAGTGGCCATAAGAATGCAG-CTTTA  1046
      ||| ||||||||||||| |||||| ||||||||||||||||||| |||||
seq2  TTTGGGATACCAGAGGTTAAAGCT-AGTGGCCATAAGAATGCAGCCTTTA  1048

seq1  CTGGTGGTTCCTTATCCTATTCTA-TTTGTTGAATTTCTATTTTATGCT-  1094
      ||||  |||||||||||||||||| |||| ||||||||||||||||||| 
seq2  CTGGGTGTTCCTTATCCTATTCTATTTTGGTGAATTTCTATTTTATGCTA  1098

seq1  AGTTTTATAGTGTTTTACTTACCAATCTTTGT-AATATATTTG  1136
      |||||||||||||||||| |||| ||||| || ||||||||||
seq2  AGTTTTATAGTGTTTTACCTACCCATCTTGGTAAATATATTTG  1141


seq1: chr7_69562444_69563580
seq2: B6Ng01-254M14.g_71_1228 (reverse)

seq1  ATGTTTTGT-AAATCCATT--AAAAAAAGAGTCAGA--TCCACACTTA--  43
      ||||||||| ||||||| |  |||||||||||||||  || |||||||  
seq2  ATGTTTTGTAAAATCCAATAAAAAAAAAGAGTCAGAATTCAACACTTAAG  50

seq1  GCAGT-CATTTTTATTAGATGCT-AATC-ACTGACATCAGTGCAGGGGC-  89
       |||| |||||| |||||||||| |||| ||||||||||||||| |||| 
seq2  ACAGTACATTTTAATTAGATGCTAAATCAACTGACATCAGTGCAAGGGCA  100

seq1  AGATTATCCA--CACAATT--CACA-TACAGCCCA--CACACTTGGACTT  132
      ||||  ||||  |||||||   ||| |||||||||   |||| |||||||
seq2  AGATATTCCAACCACAATTTCAACATTACAGCCCAACAACAC-TGGACTT  149

seq1  TAACA--CTGGGCTTTCAGTTC-TGCATTTA-TTTCAATACTTCAAACAT  178
      |||||   |||||||||||||| |||||||| ||||||||||||||||||
seq2  TAACAACTTGGGCTTTCAGTTCTTGCATTTATTTTCAATACTTCAAACAT  199

seq1  ATATATTATGGTGT-ATATTTATTTCCAGTTTTTTTCAAATACATCTTTG  227
      |||   |||||||| ||||||||||||||  |||||||||||||||||||
seq2  ATAATATATGGTGTAATATTTATTTCCAG--TTTTTCAAATACATCTTTG  247

seq1  TATACATATACGCATATATATCATTCTTAAATATATATTTCCAAATATAA  277
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATATACGCATATATATCATTCTTAAATATATATTTCCAAATATAA  297

seq1  ATAATTTCACATCAAGCCAAACAGGATAAAAACATGTAAACATATGCACC  327
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCACATCAAGCCAAACAGGATAAAAACATGTAAACATATGCACC  347

seq1  TCATTTTGGTCAAGTAAAACAGAACCACAAAGTAACCACAAGTTAACAAG  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGGTCAAGTAAAACAGAACCACAAAGTAACCACAAGTTAACAAG  397

seq1  TGCACTTGAAAGAGAAGGGAAGAAACAAACATGTAAACAAACACAGACAG  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTGAAAGAGAAGGGAAGAAACAAACATGTAAACAAACACAGACAG  447

seq1  CAGCTGCAAGGTCCTGTAAGGGTCCATTTTTTTTAAGGCTATATAGCAAA  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCAAGGTCCTGTAAGGGTCCATTTTTTTTAAGGCTATATAGCAAA  497

seq1  AAGCTCATAATTCAGTTAAAGACTTTTGTCACCTTGTCACATTTACTCTT  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCATAATTCAGTTAAAGACTTTTGTCACCTTGTCACATTTACTCTT  547

seq1  AAGGGACTTCACAATGAGAAACTGTAAACACTAGACTAGAAGTGATTGAA  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACTTCACAATGAGAAACTGTAAACACTAGACTAGAAGTGATTGAA  597

seq1  TCCTGTTGGAAAAAAGACATCACAAGTCATCAGTTGACAGAAATATTAAT  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTGGAAAAAAGACATCACAAGTCATCAGTTGACAGAAATATTAAT  647

seq1  TCCACCAAACAATACTTATAAGATTTCTTGTTATTTTGTAACACAGAGAA  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCAAACAATACTTATAAGATTTCTTGTTATTTTGTAACACAGAGAA  697

seq1  ACATCACAATCCTAGCAAGAAGAAATAGGAAATAGAGAAGAAAACAGCAA  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACAATCCTAGCAAGAAGAAATAGGAAATAGAGAAGAAAACAGCAA  747

seq1  TACTGCATAAAGATTGCCTCAGTAGCCTTTGAAAGCGATAGGGTTTTTCA  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCATAAAGATTGCCTCAGTAGCCTTTGAAAGCGATAGGGTTTTTCA  797

seq1  GTCAATAAAGGGGAATAAGCAACAGCAGACAACAGAGCTTTAGCAGACCA  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATAAAGGGGAATAAGCAACAGCAGACAACAGAGCTTTAGCAGACCA  847

seq1  GACCACATGCCACAGCGTGATACTACAGATTCAAACTGAAATATTCTTCC  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACATGCCACAGCGTGATACTACAGATTCAAACTGAAATATTCTTCC  897

seq1  AGCTGGTACTGAAGCAAGAGCCAACGGTCATCAGAGAAGGAAGAACTGCC  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTACTGAAGCAAGAGCCAACGGTCATCAGAGAAGGAAGAACTGCC  947

seq1  TCTCAGGCAAAGCAACTTCTTAAGCAACTGATTGGCCAGGCGAAGCACAG  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGCAAAGCAACTTCTTAAGCAACTGATTGGCCAGGCGAAGCACAG  997

seq1  AATGCTCTTTTTTACGGCTTTTAAACAGCACGTTTCCCTCTCGCAACTGC  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCTTTTTTACGGCTTTTAAACAGCACGTTTCCCTCTCGCAACTGC  1047

seq1  ACAGGCTCCAAAACTTGATGCCAGTATGCGCTTGATGATCCACCACCATC  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTCCAAAACTTGATGCCAGTATGCGCTTGATGATCCACCACCATC  1097

seq1  TGGTCTTGGAGGCTGATCTCTCCAGCCCTCGGGGTATTCATGC-TTGTAA  1126
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGGTCTTGGAGGCTGATCTCTCCAGCCCTCGGGGTATTCATGCATTGTAA  1147

seq1  AAACAGAATTC  1137
      |||||||||||
seq2  AAACAGAATTC  1158


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