BAC Information

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BAC

Clone NameB6Ng01-254N06
Chromosome7 (Build37)
Map Location 9,646,440 - 9,647,540
singlet/doubletsinglet
Overlap geneLOC100042810
Upstream geneLOC100041983, LOC100041989, LOC100041998, LOC100042009, LOC100042754, V2r14, EG628128, EG434109, LOC434110, EG628145, EG545909, LOC100042039, LOC100042781, LOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598
Downstream geneLOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254N06.bB6Ng01-254N06.g
ACCGA061194GA061195
length1,2061,097
definitionB6Ng01-254N06.b B6Ng01-254N06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccgtacataaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggtgaaaatctggaagcaatcccactaaa
atcagagactaggcaaggctgcccactttctccctagctattcaacattg
tacttgaaatcctagccagagcaattcgacaagggaagtagatcaaggaa
atacaaattggaaaggaagaagtcaaaatatcactttttgcacatgatat
gatagtatatatatatgtgatcctaaaaatgccactagagaactcctaag
cttgataaagagcttcaatgaagtagctggatataaaattcactcaaaca
agtcaatgtcctttgtctacacaaaagatgaacaggctgagaaagaaatt
agggaaaccacacccttctcaatagtcacaaataatataaaatacattgg
tcaccttccttgcaagaggagagcttgcctgcagggagtactctgaccac
tgaaactaaggagagatctagtctcccacgtctgctgatagaggctaaca
taatcacctgaggaacaagctctaaccagagacaataattaaaactagct
ccaagattaccagaaggtgaaaggcaaacgtaagaatcctactaacagaa
atcaaactgctcaacatcatcagaatgcagcactcccaccccacctggtc
ccgggcaacccaacacaatctaaaagctagactcggatttaaaagcatat
ctcatgatgatggtagaggacatcaagatggactttaataactcacttaa
agaaatgcaggagaacacagttaaacaggtagaagtccttaaagaggaaa
cacaaaaatcccttaaagaattacaggaaaacacgaccaaacaggtgatg
gaattgaataaaaccatccagacctaaaaagggaagtagacacaataaga
acacccaagtgaggcacatggagatggaaaccctaggaaagaatctggga
aacatagatgcaagcatcagcaacagaattcagagattgagagagaatct
cagtacagaaattcatagagacatcagccacaaatcaaagaaaataaaaa
cgtatggatctactcaaaacatcagaataacggaactcaattgagaagaa
cactcgataatggtgatggaatgaagatttcagttagggcagcaaatatc
tctcaa
gaattccttttgcagtttgacattaatagtttataggcgcttcttctcat
gtttattcacatgcaaatgtggaataaattatttgtatcagtagttccag
atattctgattatcgaattgacagtttgaattatattttcaaaaataaag
tattcatagtactaaaatgggaataactgtcactcaattgtctatcacta
actcatgcttcactcactactattcatatgaggtatgatgtaggatttca
tcgtcttttcacctagctcaatttcatatgtctaattactatattgtgta
atgaaaattttgttctattatgatggcttagttttgtttaatcttgtttt
attttattattctcccatagaatcctgtcattttctaatgagtgacagaa
agtggatatgatgaaaaaggaaggaaatcggaatattaactatgatatat
ttgccagtagaactgacaattgttcacatcccaatagaaggaatgaaaac
tgtaattaggatatattatgtgagaataacaagttattttcaataaataa
aaccatcaaaattaaaaataaattcttcctgttctcagagaatgatcttt
ctgttgtgtgttgtgttcttttggtaggtgtttttgtcaagaattattcc
acacatatccatcaaatgtattgttcttgaatgacctatgttccctctta
ttaaacattatactgttttcctccatgatttaataaagaaaagttctcct
cttatatatgattgtgtcttcataccctattcaggcaacttaggattgtc
ttaaaaataaaccagtttgttgtctttgatttcatttagagaatgttaac
aaaaaagttaaattataactgaaaattatttgttgcttttgtctgggttg
ctgttattgttgtacttgaggtgtgttaatagcctttatttttctgttgt
tctagtgctgtctaataggtccttggaccttctgatcatcttatgtaaaa
gagtgaatgcattctcaaatttactaaaaagtgatgttctatgaatatga
attttctgtaactgtgttcattaatgatgtggtgatgttcttttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_9646440_9647540
seq2: B6Ng01-254N06.g_65_1161 (reverse)

seq1  AATAAAAGAACATTCACCACATTCATTAATGAACACAGTTACAGAAAA-T  49
      |||||||||||| |||||||| |||||||||||||||||||||||||| |
seq2  AATAAAAGAACA-TCACCACA-TCATTAATGAACACAGTTACAGAAAATT  48

seq1  CATATTCATAGAAACATCACTTTTTAGTAAATTTGAAGAATGCATTCACT  99
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  CATATTCATAG-AACATCACTTTTTAGTAAATTTG-AGAATGCATTCACT  96

seq1  CTTTTACATAAGATGATCAGAAGGTCCAAGGAACCTA-TAGACAGCACTA  148
      ||||||||||||||||||||||||||||||| ||||| ||||||||||||
seq2  CTTTTACATAAGATGATCAGAAGGTCCAAGG-ACCTATTAGACAGCACTA  145

seq1  GAACAACAGAAAAAATAAAGGCTATTAACACACCTCAAGTACAACAATAA  198
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACAG-AAAAATAAAGGCTATTAACACACCTCAAGTACAACAATAA  194

seq1  CAGCAA-CCAGACAAAAGCAACAAATAATTTTCAGTTATAATTTAACTTT  247
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACCCAGACAAAAGCAACAAATAATTTTCAGTTATAATTTAACTTT  244

seq1  TTTGTTAACATTCTCTAAATGAAATCAAAGACAACAAAACTGGTTTATTT  297
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTGTTAACATTCTCTAAATGAAATCAAAGACAAC-AAACTGGTTTATTT  293

seq1  TTAAGACAATCCTAAGTTGCCTGAATAGGGTATGAAGACACAATCATATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACAATCCTAAGTTGCCTGAATAGGGTATGAAGACACAATCATATA  343

seq1  TAAGAGGAGAACTTTTCTTTATTAAATCATGGAGGAAAACAGTATAATGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGAGAACTTTTCTTTATTAAATCATGGAGGAAAACAGTATAATGT  393

seq1  TTAATAAGAGGGAACATAGGTCATTCAAGAACAATACATTTGATGGATAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAGAGGGAACATAGGTCATTCAAGAACAATACATTTGATGGATAT  443

seq1  GTGTGGAATAATTCTTGACAAAAACACCTACCAAAAGAACACAACACACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAATAATTCTTGACAAAAACACCTACCAAAAGAACACAACACACA  493

seq1  ACAGAAAGATCATTCTCTGAGAACAGGAAGAATTTATTTTTAATTTTGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGATCATTCTCTGAGAACAGGAAGAATTTATTTTTAATTTTGAT  543

seq1  GGTTTTATTTATTGAAAATAACTTGTTATTCTCACATAATATATCCTAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATTTATTGAAAATAACTTGTTATTCTCACATAATATATCCTAAT  593

seq1  TACAGTTTTCATTCCTTCTATTGGGATGTGAACAATTGTCAGTTCTACTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTTTCATTCCTTCTATTGGGATGTGAACAATTGTCAGTTCTACTG  643

seq1  GCAAATATATCATAGTTAATATTCCGATTTCCTTCCTTTTTCATCATATC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATATATCATAGTTAATATTCCGATTTCCTTCCTTTTTCATCATATC  693

seq1  CACTTTCTGTCACTCATTAGAAAATGACAGGATTCTATGGGAGAATAATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCTGTCACTCATTAGAAAATGACAGGATTCTATGGGAGAATAATA  743

seq1  AAATAAAACAAGATTAAACAAAACTAAGCCATCATAATAGAACAAAATTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAACAAGATTAAACAAAACTAAGCCATCATAATAGAACAAAATTT  793

seq1  TCATTACACAATATAGTAATTAGACATATGAAATTGAGCTAGGTGAAAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACACAATATAGTAATTAGACATATGAAATTGAGCTAGGTGAAAAG  843

seq1  ACGATGAAATCCTACATCATACCTCATATGAATAGTAGTGAGTGAAGCAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGAAATCCTACATCATACCTCATATGAATAGTAGTGAGTGAAGCAT  893

seq1  GAGTTAGTGATAGACAATTGAGTGACAGTTATTCCCATTTTAGTACTATG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAGTGATAGACAATTGAGTGACAGTTATTCCCATTTTAGTACTATG  943

seq1  AATACTTTATTTTTGAAAATATAATTCAAACTGTCAATTCGATAATCAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTATTTTTGAAAATATAATTCAAACTGTCAATTCGATAATCAGA  993

seq1  ATATCTGGAACTACTGATACAAATAATTTATTCCACATTTGCATGTGAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGGAACTACTGATACAAATAATTTATTCCACATTTGCATGTGAAT  1043

seq1  AAACATGAGAAGAAGCGCCTATAAACTATTAATGTCAAACTGCAAAAGGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGAGAAGAAGCGCCTATAAACTATTAATGTCAAACTGCAAAAGGA  1093

seq1  ATTC  1101
      ||||
seq2  ATTC  1097