BAC Information

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BAC

Clone NameB6Ng01-254P22
Chromosome7 (Build37)
Map Location 10,884,411 - 11,026,296
singlet/doubletdoublet
Overlap geneLOC628525, LOC100042206, Nlrp4d, LOC100042214
Upstream geneV2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521
Downstream geneV1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254P22.bB6Ng01-254P22.g
ACCGA061313GA061314
length1,0321,061
definitionB6Ng01-254P22.b B6Ng01-254P22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,025,293 - 11,026,296)(10,884,411 - 10,885,421)
sequence
gaattcttatcttgttcctcgttgtagtggaatgctttgaggttttgccc
cacttactactatgttgccctacatttgtcatgcatagtctttattatgt
tgaattataatccctttatccttatcatctccatggcttttatgatgaat
ttatgacagcaattatcagagactttttcctgtatctaatgagatacttt
tgtggttttggtgtttgagtctattcatatgatgaaactgtgtttatttg
agagtatatgttgaactatctctatatatctgggatgaggcagactaatt
atggtgcgtagttttttaagtcgaagtcattttgatgtaaagaacttaaa
aataaaaacatgacacactgaattttaacaagccattcaaacctttggct
aatcctatattctattatattgtagtgaatgtctatggtgttagtatcac
cattctaaactcatgaccttttttttatttgtttaggattatgccacaat
tgtccctttgtctgaatttagaccatcctcaccacccaattttctcgttg
tttcactcctggctctaatagtacacccaccctcacagctgttgtcatga
gtacatatgtaaattataggtatgatctggatatgagcatgaacattcac
gttttctatattttcttaaagttggtgttgacatttcgtaatatggttta
tttatttatttatttatttatttatttatttactacagtatttataagct
gcctgcctagactgggcagatttaccactacactgctctattcccagcta
tgagttccctttgctacttgaagcttctcagtgccatggggttctgcttt
gccttcctttccactcctcttcttccatcttcttcatccctccttctttt
tctcttcccccactctctaaaaccttctagacccaccttttccattttta
ctgggcaaattcacaggcttctgggaactattatttgacccagtaaagaa
tgggaagaccgtttccacaatgaaattcacct
gaattctctgccctgccttaaccacttgttgacatgtgaaaaggaacaaa
aaggcttctaacactggcgaaagttcaaggccagacatacctcttaaagc
tgtaatgtctcgcagttctggttccgcctcgtgaacgagggatctccctt
gtgctggtgtgatggtagttcccgggtttctcggcaccacttattgctcg
agcttttgttcccactggcaagaacacactcaggacaaccagaatcttct
gcagcaaagcttttattgcttacttatcaggagggaagaccgggaaaatg
gtgcttcttatatagcccgcagtgtgatgtttcagcacctgatgtggcgt
gacagctcctgattcgttgcttgcccatcaccccattactatgccgtgag
aagggcagtgactaggagtgagttcactcttgcacttgcgcataaggctt
gtttactagttaggctcagtggaatccagtgccatcttataatggcgatt
gctcacgacatgcacgcaattgctcatggcaaggctctcatggttaccat
cacagaattgaatgaacattttaaattaataagttcatatttggatgaaa
ttgatgtgcttcacatgtgactagcattggcacctttagatatttttaca
tttttatgtgatatattacaagagtatattttggaaattattagcatttt
ttaaaaaacatacagtattatgaaaaatagtcacagaatgccaaagttga
ataacatgtgttttaaaatttcatatgaggactaccaaggagaaaaaaca
ctgttgtcctatataagctgctgggaaattattttctttcaaggtgaagt
taatttcagtacatttctcattgaaagtaattgtaaaaaatctttaaggg
tttcttaaatcatactaataccattagaatccctcccacatggaatgctt
tgaagcttagaaatcaaactcattttagagccttgggtaaaggtgctgaa
cacctacaaggaaatattgccttgtctttattttacttacaatgcttgtg
atcaaggtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11025293_11026296
seq2: B6Ng01-254P22.b_60_1082 (reverse)

seq1  AGGTG-ATTTCA-TGT-GAAAC-GTCTTCCCA-TCTTAACT-GGTCAAAT  44
      ||||| |||||| ||| ||||| ||||||||| |||| ||| ||||||||
seq2  AGGTGAATTTCATTGTGGAAACGGTCTTCCCATTCTTTACTGGGTCAAAT  50

seq1  -ATAGT--CCAG-AGCCTGTG-ATTTG-CCAGT-AAAATGG-AAAGGTGG  86
       |||||  |||| |||||||| ||||| ||||| ||||||| ||||||||
seq2  AATAGTTCCCAGAAGCCTGTGAATTTGCCCAGTAAAAATGGAAAAGGTGG  100

seq1  GTCTAG-AGGTTTTAGAGAGTGGGGGAAGAGAAAAAGAAGGA-GGATGAA  134
      |||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  GTCTAGAAGGTTTTAGAGAGTGGGGGAAGAGAAAAAGAAGGAGGGATGAA  150

seq1  GAAGATGGAAGAAGAGGAGTGG-AAGGAAGGCAAAGCAGAACCCCATGGC  183
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAAGATGGAAGAAGAGGAGTGGAAAGGAAGGCAAAGCAGAACCCCATGGC  200

seq1  ACTGAGAAGCTTCAAGTAGC-AAGGGAACTCATAGCTGGGAATAGAGCAG  232
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACTGAGAAGCTTCAAGTAGCAAAGGGAACTCATAGCTGGGAATAGAGCAG  250

seq1  TGTAGTGGTAAATCTGCCCAGTCTAGGCAGGCAGCTTATAAATACTGTAG  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGGTAAATCTGCCCAGTCTAGGCAGGCAGCTTATAAATACTGTAG  300

seq1  TAAATAAATAAATAAATAAATAAATAAATAAATAAACCATATTACGAAAT  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATAAATAAATAAATAAATAAATAAACCATATTACGAAAT  350

seq1  GTCAACACCAAC-TTAAGAAAATATAGAAAACGTGAATGTTCATGCTCAT  381
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTCAACACCAACTTTAAGAAAATATAGAAAACGTGAATGTTCATGCTCAT  400

seq1  ATCCAGATCATACCTATAATTTACATATGTACTCATGACAACAGCTGTGA  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGATCATACCTATAATTTACATATGTACTCATGACAACAGCTGTGA  450

seq1  GGGTGGGTGTACTATTAGAGCCAGGAGTGAAACAACGAGAAAATTGGGTG  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGTGTACTATTAGAGCCAGGAGTGAAACAACGAGAAAATTGGGTG  500

seq1  GTGAGGATGGTCTAAATTCAGACAAAGGGACAATTGTGGCATAATCCTAA  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGATGGTCTAAATTCAGACAAAGGGACAATTGTGGCATAATCCTAA  550

seq1  ACAAATAAAAAAAAGGTCATGAGTTTAGAATGGTGATACTAACACCATAG  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAAAAAAAAGGTCATGAGTTTAGAATGGTGATACTAACACCATAG  600

seq1  ACATTCACTACAATATAATAGAATATAGGATTAGCCAAAGGTTTGAATGG  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCACTACAATATAATAGAATATAGGATTAGCCAAAGGTTTGAATGG  650

seq1  CTTGTTAAAATTCAGTGTGTCATGTTTTTATTTTTAAGTTCTTTACATCA  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTAAAATTCAGTGTGTCATGTTTTTATTTTTAAGTTCTTTACATCA  700

seq1  AAATGACTTCGACTTAAAAAACTACGCACCATAATTAGTCTGCCTCATCC  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTTCGACTTAAAAAACTACGCACCATAATTAGTCTGCCTCATCC  750

seq1  CAGATATATAGAGATAGTTCAACATATACTCTCAAATAAACACAGTTTCA  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATATAGAGATAGTTCAACATATACTCTCAAATAAACACAGTTTCA  800

seq1  TCATATGAATAGACTCAAACACCAAAACCACAAAAGTATCTCATTAGATA  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGAATAGACTCAAACACCAAAACCACAAAAGTATCTCATTAGATA  850

seq1  CAGGAAAAAGTCTCTGATAATTGCTGTCATAAATTCATCATAAAAGCCAT  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAAAGTCTCTGATAATTGCTGTCATAAATTCATCATAAAAGCCAT  900

seq1  GGAGATGATAAGGATAAAGGGATTATAATTCAACATAATAAAGACTATGC  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGATAAGGATAAAGGGATTATAATTCAACATAATAAAGACTATGC  950

seq1  ATGACAAATGTAGGGCAACATAGTAGTAAGTGGGGCAAAACCTCAAAGCA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAATGTAGGGCAACATAGTAGTAAGTGGGGCAAAACCTCAAAGCA  1000

seq1  TTCCACTACAACGAGGAACAAGA  1004
      |||||||||||||||||||||||
seq2  TTCCACTACAACGAGGAACAAGA  1023

seq1: chr7_10884411_10885421
seq2: B6Ng01-254P22.g_112_1131

seq1  AGGAACAAAAAGGCTTCTAACACTGGCGAAAGTTCAAGGCCAGACATACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAAAAAGGCTTCTAACACTGGCGAAAGTTCAAGGCCAGACATACC  50

seq1  TCTTAAAGCTGTAATGTCTCGCAGTTCTGGTTCCGCCTCGTGAACGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAGCTGTAATGTCTCGCAGTTCTGGTTCCGCCTCGTGAACGAGGG  100

seq1  ATCTCCCTTGTGCTGGTGTGATGGTAGTTCCCGGGTTTCTCGGCACCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCTTGTGCTGGTGTGATGGTAGTTCCCGGGTTTCTCGGCACCACT  150

seq1  TATTGCTCGAGCTTTTGTTCCCACTGGCAAGAACACACTCAGGACAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTCGAGCTTTTGTTCCCACTGGCAAGAACACACTCAGGACAACCA  200

seq1  GAATCTTCTGCAGCAAAGCTTTTATTGCTTACTTATCAGGAGGGAAGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTCTGCAGCAAAGCTTTTATTGCTTACTTATCAGGAGGGAAGACC  250

seq1  GGGAAAATGGTGCTTCTTATATAGCCCGCAGTGTGATGTTTCAGCACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAATGGTGCTTCTTATATAGCCCGCAGTGTGATGTTTCAGCACCTG  300

seq1  ATGTGGCGTGACAGCTCCTGATTCGTTGCTTGCCCATCACCCCATTACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCGTGACAGCTCCTGATTCGTTGCTTGCCCATCACCCCATTACTA  350

seq1  TGCCGTGAGAAGGGCAGTGACTAGGAGTGAGTTCACTCTTGCACTTGCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTGAGAAGGGCAGTGACTAGGAGTGAGTTCACTCTTGCACTTGCGC  400

seq1  ATAAGGCTTGTTTACTAGTTAGGCTCAGTGGAATCCAGTGCCATCTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCTTGTTTACTAGTTAGGCTCAGTGGAATCCAGTGCCATCTTATA  450

seq1  ATGGCGATTGCTCACGACATGCACGCAATTGCTCATGGCAAGGCTCTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGATTGCTCACGACATGCACGCAATTGCTCATGGCAAGGCTCTCAT  500

seq1  GGTTACCATCACAGAATTGAATGAACATTTTAAATTAATAAGTTCATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACCATCACAGAATTGAATGAACATTTTAAATTAATAAGTTCATATT  550

seq1  TGGATGAAATTGATGTGCTTCACATGTGACTAGCATTGGCACCTTTAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAAATTGATGTGCTTCACATGTGACTAGCATTGGCACCTTTAGAT  600

seq1  A-TTTTACATTTTTATGTGATATATTACAAGAGTATATTTTGGAAATTAT  649
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACATTTTTATGTGATATATTACAAGAGTATATTTTGGAAATTAT  650

seq1  TAGCATTTTTTAAAAAACATACAGTATTATGAAAAATAGTCACAGAATGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTTTTTAAAAAACATACAGTATTATGAAAAATAGTCACAGAATGC  700

seq1  CAAAG-TGAATAACATGTGTTTTAAAA-TTCATATGAGGACTACCAAGGA  747
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAAAGTTGAATAACATGTGTTTTAAAATTTCATATGAGGACTACCAAGGA  750

seq1  GAAAAAACACTGTTGTCCTATATAAGCTGCT-GGAAATTATTTTCTTTCA  796
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  GAAAAAACACTGTTGTCCTATATAAGCTGCTGGGAAATTATTTTCTTTC-  799

seq1  AAGGTGAAGTTAATTTCAGTACATTTCTCATTGAAAGTAATTGTAAAAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAAGTTAATTTCAGTACATTTCTCATTGAAAGTAATTGTAAAAAA  849

seq1  TCTTT-AGGGTTCCTAAAATCATACTAATACCAATAGAATCCTCCACACA  895
      ||||| |||||| || ||||||||||||||||| ||||||||  | ||||
seq2  TCTTTAAGGGTTTCTTAAATCATACTAATACCATTAGAATCCCTCCCACA  899

seq1  TGG-ATGCTTTG-AGC-TAGAAATCAAACTTCATTTTTAGAGCCTTGGGG  942
      ||| |||||||| ||| |||||||||||| ||| ||||||||||||||| 
seq2  TGGAATGCTTTGAAGCTTAGAAATCAAAC-TCA-TTTTAGAGCCTTGGGT  947

seq1  AAA-GTGCTG-ACACCTAACAAG--AATATTGCTTTGTCTTTATTTTAAC  988
      ||| |||||| |||||| |||||  |||||||| ||||||||||||||  
seq2  AAAGGTGCTGAACACCT-ACAAGGAAATATTGCCTTGTCTTTATTTTACT  996

seq1  TACAATGC-TGTGATCAAAGTCTG  1011
      |||||||| ||||||||| |||||
seq2  TACAATGCTTGTGATCAAGGTCTG  1020