BAC Information

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BAC

Clone NameB6Ng01-255B15
Chromosome7 (Build37)
Map Location 12,099,189 - 12,100,138
singlet/doubletsinglet
Overlap geneZscan4-ps2
Upstream geneEG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, LOC675782
Downstream geneLOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255B15.bB6Ng01-255B15.g
ACCGA061393GA061394
length967966
definitionB6Ng01-255B15.b B6Ng01-255B15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgttccccatttttaatggggtgatttgattt
tctggagtccatcttctggagttctttatatatattggatattagtcccc
tatctgatttaggattggtaaagatcctttccgaatctgttggtggcctt
tttgtgttattgacagtgtttttttgccttacagaagctttgcaatttta
tgaggtcccatttgtcgattcttatagcacaagccattgctgttctattc
aggaatttttcccctgtgcccatatcttcgaggcttttccccactttctc
ctctgtaagattctctgtctctggttttatgtggagttccttgatccact
tagatttgacctaagtaaaaggagataggaatagatcaattcgcatactt
ttccatgataactaccagttatgccagcaccatttgttgaaaatactgtc
ttttttccactggatgtttttagctcccttttcaaagatcaattgaccat
aggtgtttgggttcatttctggatcttcaattctattccattggtctact
tgtctgtcactatacaagtaccatgccgttatttatcacaattgctgtgt
agtacagctttaggtcaggtgtggtgattccaccagaggttcttttatcc
ttgagaagagtttttgctatcctaagttttttgttattccggatgaattt
gaaaactgccatttctattcattgaagaattgagttggaatttttatggg
gattacattgaatctgtagattgctttctgcaagatagccattttcacta
tattggtcctgccaatccatgagcatgggagatctttccatcttctacga
tcttctttaatttctttcttcagagacttgaagttcttatcatacatatc
tttcaattccttagttagagtcacaccaaggtattttatattatttatga
ctatttgaaggtgtttt
gaattcctcttcagtgtggtactatttccattcactacagtgacttacaa
cacttgattaggagatgatcttcttccaaagaagagtcaatcattgcatt
ggagatgcaaaactagagctgagttaggattccttatgtgattcaatcag
caggaaaagatgtctttccctattttgtttgcttgcttgtatttgatgcc
cccttttggcattatctgttcctctgggtcagactgaccttggatctctg
ggcttaataggcagtgctggggactactgactctcctgattcaatttcta
ttactttgagtactatggataaaatggtaatctgccccacccaggaacag
gagttttgatagaatcactgtgtgaatttaatcctcatcagtaactgact
aaaggaagccaggcgctataaaagggaaccaatcctaatagaacctcaga
taaagcagagccaaggcagagacacacagtgcctccctgggcttcttggc
atcacccttgaagttcactggagaaagaggtgaggtggaggaataggtaa
actttccttcctagtggtcttgaatgtgtaagtatatgtgtatttatgtg
tgtatgtgtgtttatttgtggacttgtgagaagattcatcacaattatgg
gtagatctcagtagttcaatattgcctttttggaagctttcctgatcaac
aggttgatttttattaactctacagaaaactctgcagttggtaacctttc
aggtatgtgtgtggatatttgatttgcctcctctgagaattttaatttct
ctgattattatttttacataattttcgatacgaacgtgtttattctcctg
gagctttagtatcgaatgaggagcgttgatattttacatttgaggaacag
gctatattacctccttaattttccgaaagggggaactgactaccttgctg
tgtattcctaagatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_12099189_12100138
seq2: B6Ng01-255B15.g_66_1031

seq1  GAATTCCTCTTCAGTGTGGTACTATTTCCATTCACTACAGTGACTTACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTCAGTGTGGTACTATTTCCATTCACTACAGTGACTTACAA  50

seq1  CACTTGATTAGGAGATGATCTTCTTCCAAAGAAGAGTCAATCATTGCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGATTAGGAGATGATCTTCTTCCAAAGAAGAGTCAATCATTGCATT  100

seq1  GGAGATGCAAAACTAGAGCTGAGTTAGGATTCCTTATGTGATTCAATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGCAAAACTAGAGCTGAGTTAGGATTCCTTATGTGATTCAATCAG  150

seq1  CAGGAAAAGATGTCTTTCCCTATTTTGTTTGCTTGCTTGTATTTGATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAAGATGTCTTTCCCTATTTTGTTTGCTTGCTTGTATTTGATGCC  200

seq1  CCCTTTTGGCATTATCTGTTCCTCTGGGTCAGACTGACCTTGGATCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTGGCATTATCTGTTCCTCTGGGTCAGACTGACCTTGGATCTCTG  250

seq1  GGCTTAATAGGCAGTGCTGGGGACTACTGACTCTCCTGATTCAATTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAATAGGCAGTGCTGGGGACTACTGACTCTCCTGATTCAATTTCTA  300

seq1  TTACTTTGAGTACTATGGATAAAATGGTAATCTGCCCCACCCAGGAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTGAGTACTATGGATAAAATGGTAATCTGCCCCACCCAGGAACAG  350

seq1  GAGTTTTGATAGAATCACTGTGTGAATTTAATCCTCATCAGTAACTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTGATAGAATCACTGTGTGAATTTAATCCTCATCAGTAACTGACT  400

seq1  AAAGGAAGCCAGGCGCTATAAAAGGGAACCAATCCTAATAGAACCTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGCCAGGCGCTATAAAAGGGAACCAATCCTAATAGAACCTCAGA  450

seq1  TAAAGCAGAGCCAAGGCAGAGACACACAGTGCCTCCCTGGGCTTCTTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAGAGCCAAGGCAGAGACACACAGTGCCTCCCTGGGCTTCTTGGC  500

seq1  ATCACCCTTGAAGTTCACTGGAGAAAGAGGTGAGGTGGAGGAATAGGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCTTGAAGTTCACTGGAGAAAGAGGTGAGGTGGAGGAATAGGTAA  550

seq1  ACTTTCCTTCCTAGTGGTCTTGAATGTGTAAGTATATGTGTATTTATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCTTCCTAGTGGTCTTGAATGTGTAAGTATATGTGTATTTATGTG  600

seq1  TGTATGTGTGTTTATTTGTGGACTTGTGAGAAGATTCATCACAATTATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGTGTTTATTTGTGGACTTGTGAGAAGATTCATCACAATTATGG  650

seq1  GTAGATCTCAGTAGTTCAATATTGCC-TTTTGGAAGCTTTCCTGATCAAG  699
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  GTAGATCTCAGTAGTTCAATATTGCCTTTTTGGAAGCTTTCCTGATCAAC  700

seq1  AGGTTGATTTTTATAAACTCTAAAGAAAACTCTG-AGTTGGTAACCATTC  748
      |||||||||||||| ||||||| ||||||||||| ||||||||||| |||
seq2  AGGTTGATTTTTATTAACTCTACAGAAAACTCTGCAGTTGGTAACCTTTC  750

seq1  AGGTATGTGTGTGGATATTTG-TTTGCCT-CTCTGTGAA-TTTAATATTC  795
      ||||||||||||||||||||| ||||||| ||||| ||| |||||| |  
seq2  AGGTATGTGTGTGGATATTTGATTTGCCTCCTCTGAGAATTTTAATTTCT  800

seq1  CTGATTATTCATTTTAAAT-ATTTTC-TTATGAACGT-ATTATTCT-CTG  841
      |||||||||  ||||| || ||||||  || ||||||  ||||||| |||
seq2  CTGATTATTATTTTTACATAATTTTCGATACGAACGTGTTTATTCTCCTG  850

seq1  GTGCTTTA-----GAATGAGACAGAAGGGTGAAACTTAAAATTTGAGGAA  886
      | ||||||     |||||||   ||  | ||| | || | ||||||||||
seq2  GAGCTTTAGTATCGAATGAG---GAGCGTTGATATTTTACATTTGAGGAA  897

seq1  CAG--CAGAATAACTCCCAACTTTTCC-AAAGGGGGAACAGACAACATTG  933
      |||   | | || ||||  | |||||| ||||||||||| ||| || |||
seq2  CAGGCTATATTACCTCCTTAATTTTCCGAAAGGGGGAACTGACTACCTTG  947

seq1  CTGTG--TTCTTAAGATCT  950
      |||||  ||| ||||||||
seq2  CTGTGTATTCCTAAGATCT  966