BAC Information

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BAC

Clone NameB6Ng01-255D19
Chromosome7 (Build37)
Map Location 13,346,664 - 13,489,022
singlet/doubletdoublet
Overlap geneEG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22
Upstream geneEG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081
Downstream geneRps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255D19.bB6Ng01-255D19.g
ACCGA061493GA061494
length1,103698
definitionB6Ng01-255D19.b B6Ng01-255D19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,346,664 - 13,347,774)(13,488,328 - 13,489,022)
sequence
gaattcacaccaaggaaaaagcctcatgggtgaaatgactcatcactcaa
ccagcatgaaaggacacacactgggcgaaagccctatctgtatcaggact
gtggcaaggccttcaggcagggcacccatcctactcagcaccagaggatc
tacacagaagctgtatgagtgcagacactgcggcaaagccttcacacaca
gcccttctcttaccaagcaccagagaactcatactgagtagacctattcc
acatggaagacttaagccagcccattcagtactagagacaccattatcat
tctcatgagagctaagtatacataagcattagtgtaccaactctcctcag
atgtctgagaagtgacagggaccatcaagctcaaagttgttcctggatcc
aaaaagtaagtaaatgtagacaccataagtactaaggtccatcaacttga
atgttcaataatgtattctagtatcgacaaagaagaaagtgagcaagcat
gtgtctgttgatagctttgtcttcctttgcattcaaggactcaccatagt
ccaaatcagagctgttctatatggtaaaaaaaaaaaatgtaaaagaacta
aatgaagtcagattttgtcattactgcacatcacatgcctgaagtggtgc
taaagaacagttaaatgtgactggaatagtcctagaaaatacaacagcaa
agtgtttccaaaccaaatggcatcctcttcatggaatctcggtgaatact
cactgtctcagcgcacagctgatcagtgccacaaacttcaattccagtcc
aaaataaactagctatcttgtttttaagtagaggtttgtgggggtgcagt
gtggaccaaacctgggccttgaacttgctagacaagctctctaccactaa
gctcagtcaagtcccaacccccctttgggttatcttaattttataacaaa
ttaatgtacataggatttaaagggctttgtataagaatatttcagactta
gaactcgttactatggagcctcacaattcttagatgacttcactctttct
caatttattgcaagaacacatggtatagaatgcagtgttgtgtttacaaa
aaa
gaattcagtgagtcacagggacgactcaagcctcagaattggggctgaag
aaacgttagagcttcatcaccatctgaaagaagggaggggaggtgcgggc
ttgagacagccaggctggcttccagttcactatcgtcctgcctcatcccg
tgcatgtactaccatgcctgcttttttaaacgtatgtatttgggccagcg
agatggattacctggtaaaggtgcttgccaccaatacactcattgtcaca
ttagaaaaagatgagtataatgaccatgtcagcgcccactcagaacaaat
gaggacactcagtggtcccatgcattcataatatacaacagaggggaacc
cactaagctccagcagaaagtttcagatccacggttacagatgatcctga
ttaaattttaaaaaacgaaacagtcatgagcgtaggaagatttgcaagga
ggatggggggcggggataactgaggtgggaggaagactgggtgtgtgtgt
gttacagtaatcagaatgcagggtatacatggatggagttatcaaagaac
aagttcaatgaagtttagaaggggagggggcaatgagatggctccacagg
taaaggtgcaggaaaccacttttggtggaaggaagagaactgactccggc
ttgagtaccatatataaaaataaaaagttcatctttagggctgagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_13346664_13347774
seq2: B6Ng01-255D19.b_50_1152

seq1  GAATTCACACCAAGGAAAAAGCCTCATGGGTGAAATGACTCATCACTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACCAAGGAAAAAGCCTCATGGGTGAAATGACTCATCACTCAA  50

seq1  CCAGCATGAAAGGACACACACTGGGCGAAAGCCCTATCTGTATCAGGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATGAAAGGACACACACTGGGCGAAAGCCCTATCTGTATCAGGACT  100

seq1  GTGGCAAGGCCTTCAGGCAGGGCACCCATCCTACTCAGCACCAGAGGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAAGGCCTTCAGGCAGGGCACCCATCCTACTCAGCACCAGAGGATC  150

seq1  TACACAGAAGCTGTATGAGTGCAGACACTGCGGCAAAGCCTTCACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAAGCTGTATGAGTGCAGACACTGCGGCAAAGCCTTCACACACA  200

seq1  GCCCTTCTCTTACCAAGCACCAGAGAACTCATACTGAGTAGACCTATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCTCTTACCAAGCACCAGAGAACTCATACTGAGTAGACCTATTCC  250

seq1  ACATGGAAGACTTAAGCCAGCCCATTCAGTACTAGAGACACCATTATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAAGACTTAAGCCAGCCCATTCAGTACTAGAGACACCATTATCAT  300

seq1  TCTCATGAGAGCTAAGTATACATAAGCATTAGTGTACCAACTCTCCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGAGAGCTAAGTATACATAAGCATTAGTGTACCAACTCTCCTCAG  350

seq1  ATGTCTGAGAAGTGACAGGGACCATCAAGCTCAAAGTTGTTCCTGGATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGAGAAGTGACAGGGACCATCAAGCTCAAAGTTGTTCCTGGATCC  400

seq1  AAAAAGTAAGTAAATGTAGACACCATAAGTACTAAGGTCCATCAACTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAAGTAAATGTAGACACCATAAGTACTAAGGTCCATCAACTTGA  450

seq1  ATGTTCAATAATGTATTCTAGTATCGACAAAGAAGAAAGTGAGCAAGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAATAATGTATTCTAGTATCGACAAAGAAGAAAGTGAGCAAGCAT  500

seq1  GTGTCTGTTGATAGCTTTGTCTTCCTTTGCATTCAAGGACTCACCATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTTGATAGCTTTGTCTTCCTTTGCATTCAAGGACTCACCATAGT  550

seq1  CCAAATCAGAGCTGTTCTATATGGTAAAAAAAAAAAATGTAAAAGAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCAGAGCTGTTCTATATGGTAAAAAAAAAAAATGTAAAAGAACTA  600

seq1  AATGAAGTCAGATTTTGTCATTACTGCACATCACATGCCTGAAGTGGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGTCAGATTTTGTCATTACTGCACATCACATGCCTGAAGTGGTGC  650

seq1  TAAAGAACAGTTAAATGTGACTGGAATAGTCCTAGAAAATACAACAGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACAGTTAAATGTGACTGGAATAGTCCTAGAAAATACAACAGCAA  700

seq1  AGTGTTTCCAAACCAAATGGCATCCTCTTCATGGAATCTCGGTGAATACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTCCAAACCAAATGGCATCCTCTTCATGGAATCTCGGTGAATACT  750

seq1  CACTGTCTCAGCGCACAGCTGATCAGTGCCACAAACTTCAATTCCAGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCTCAGCGCACAGCTGATCAGTGCCACAAACTTCAATTCCAGTCC  800

seq1  AAAATAAACTAGCTATCTTGTTTTTAAGTAGAGGTTTGTGGGGGTGCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAACTAGCTATCTTGTTTTTAAGTAGAGGTTTGTGGGGGTGCAGT  850

seq1  GTGGACCAAACCTGGGCCTTGAACTTGCTAGACAAGCTCTCTACCACTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACCAAACCTGGGCCTTGAACTTGCTAGACAAGCTCTCTACCACTAA  900

seq1  GCTCAGTCAAGTCCCAACCCCCCTTTGGGTTATCTTAATTTTATAACAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTCAAGTCCCAACCCCCCTTTGGGTTATCTTAATTTTATAACAAA  950

seq1  TTAATGTACAATAGGATTTAAA-GGCTTTGTATAAGAATATTTCAGACTT  999
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  TTAATGTAC-ATAGGATTTAAAGGGCTTTGTATAAGAATATTTCAGACTT  999

seq1  AGAACTCGTTACTATGGAGCCTCACAAATTCTTAGATGACTTCACTCTTT  1049
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGAACTCGTTACTATGGAGCCTCAC-AATTCTTAGATGACTTCACTCTTT  1048

seq1  CTCAAATTTTATTGC-AGAACACATGGGTATTAGAAATGCAGGTGTTGGT  1098
      |||||  |||||||| ||||||||| |||| ||| |||||| ||||| ||
seq2  CTCAA--TTTATTGCAAGAACACAT-GGTA-TAG-AATGCA-GTGTT-GT  1091

seq1  GTTTTACAAAAAA  1111
      | |||||||||||
seq2  G-TTTACAAAAAA  1103

seq1: chr7_13488328_13489022
seq2: B6Ng01-255D19.g_66_763 (reverse)

seq1  AATCTCAGCCCCTAAGATGATACTTTTATTTTTATATATGGTACTCAAGC  50
      |||||||||||  |||||||   |||||||||||||||||||||||||||
seq2  AATCTCAGCCCTAAAGATGAACTTTTTATTTTTATATATGGTACTCAAGC  50

seq1  CGGAGTCAGTTCTCTTCCTTCCACC-AAAGTGG-TTCCTGCACCTTTACC  98
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  CGGAGTCAGTTCTCTTCCTTCCACCAAAAGTGGTTTCCTGCACCTTTACC  100

seq1  TGTGGAGCCATCTCATTGCCCCCTCCCCTTCT-AACTTCATTGAACTTGT  147
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTGGAGCCATCTCATTGCCCCCTCCCCTTCTAAACTTCATTGAACTTGT  150

seq1  TCTTTGATAACTCCATCCATGTATACCCTGCATTCTGATTACTGTAACAC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGATAACTCCATCCATGTATACCCTGCATTCTGATTACTGTAACAC  200

seq1  ACACACACCCAGTCTTCCTCCCACCTCAGTTATCCCCGCCCCCCATCCTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACCCAGTCTTCCTCCCACCTCAGTTATCCCCGCCCCCCATCCTC  250

seq1  CTTGCAAATCTTCCTACGCTCATGACTGTTTCGTTTTTTAAAATTTAATC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAAATCTTCCTACGCTCATGACTGTTTCGTTTTTTAAAATTTAATC  300

seq1  AGGATCATCTGTAACCGTGGATCTGAAACTTTCTGCTGGAGCTTAGTGGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCATCTGTAACCGTGGATCTGAAACTTTCTGCTGGAGCTTAGTGGG  350

seq1  TTCCCCTCTGTTGTATATTATGAATGCATGGGACCACTGAGTGTCCTCAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTCTGTTGTATATTATGAATGCATGGGACCACTGAGTGTCCTCAT  400

seq1  TTGTTCTGAGTGGGCGCTGACATGGTCATTATACTCATCTTTTTCTAATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGAGTGGGCGCTGACATGGTCATTATACTCATCTTTTTCTAATG  450

seq1  TGACAATGAGTGTATTGGTGGCAAGCACCTTTACCAGGTAATCCATCTCG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATGAGTGTATTGGTGGCAAGCACCTTTACCAGGTAATCCATCTCG  500

seq1  CTGGCCCAAATACATACGTTTAAAAAAGCAGGCATGGTAGTACATGCACG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCAAATACATACGTTTAAAAAAGCAGGCATGGTAGTACATGCACG  550

seq1  GGATGAGGCAGGACGATAGTGAACTGGAAGCCAGCCTGGCTGTCTCAAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAGGCAGGACGATAGTGAACTGGAAGCCAGCCTGGCTGTCTCAAGC  600

seq1  CCGCACCTCCCCTCCCTTCTTTCAGATGGTGATGAAGCTCTAACGTTTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCACCTCCCCTCCCTTCTTTCAGATGGTGATGAAGCTCTAACGTTTCT  650

seq1  TCAGCCCCAATTCTGAGGCTTGAGTCGTCCCTGTGACTCACTGAATTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCCAATTCTGAGGCTTGAGTCGTCCCTGTGACTCACTGAATTC  698