BAC Information

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BAC

Clone NameB6Ng01-255M06
Chromosome7 (Build37)
Map Location 25,260,218 - 25,438,064
singlet/doubletdoublet
Overlap genePlaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3
Upstream geneLOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1
Downstream geneLOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255M06.bB6Ng01-255M06.g
ACCGA061894GA061895
length8451,062
definitionB6Ng01-255M06.b B6Ng01-255M06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,437,242 - 25,438,064)(25,260,218 - 25,261,280)
sequence
gaattccagggtagcctaggctacattgcatgttctaagccaggttgagt
tatgtagttatataccaggaccttgtctggaaagatggatggagcatggg
ggtaggaggaggaaaaaggggagggaagagaaagagaaagcccatgttgt
caagggaagaagagggaagataaagagtggagctgattaaaaaattaaag
ggggggggctggagagatgacttagcagttaagagcactggctacacttt
cggaagtccagagttcaattcccagcaaccacatggtggctcacaaccat
ctgtaatgcgatctgatgccctcttctggtgtgtctgaagacagctacag
tgtactcacatacataaaataaatagatttaaaaacaaaacgaaaacaaa
caaaacctaactgggctagagagatagatgtgcaaatcaattttaattaa
aaaaaaaactttaaattaaaaaaaagggaaagaaaatcaagagagctaga
gagacagctcaggggataaaagcccacaaataaaagctcttgaagagggc
atgagctcagttcccagcacgatcaccacgtgcctcacgatcactcttaa
ctccgttttcggtggaattcaatgtctcccaccttcggaggtattcattc
ccatgcattgcaaaacaccttaattctaaaataaaaataaaataaaataa
attttaaaactgtatgggaaaaaatagaaaataaattgcttgcagggcct
aaagagatagctcttcaccttaaagagcccgtaacctgctcctggctcag
gacctgggttttggtttcccaacaccccacaatccctggctccta
gaattcttactcggactcaccgactcttctttttcctcagtgctgggaaa
ccggagttataccgtaagaggctgcgccacggcttcctggtgccaaggct
cccacgtggcagactccttcccgacccacctcaacgtctctgtctcctgc
tgccacggcagcggctgtaacagccccacagggggcgcccccaggccagg
ccctgctcaactcagcctcattgcctctctgctcctgaccctcggactat
ggggcgtcctcctctggacctgactcctgagccggcagccctggctggac
ccagggtcttttgactccctcccccctgctccatctttgaggatgtgtgt
gccctcgtgttgtcttctttggacctcagtttttccatgaaccagaagag
aattggaacaagggctgcgggcagcaggggcctcttagttgagataatat
tgttgctgttattattattattatcattgttattgctctaatttattata
taaatatatatataaaagatttttgtaccagtgaacaaggttgggtctcc
ccactgtcacatttagcttgggaagatgagagcagcagggaattgttttt
ttgtttgtttgtttgtttgattgattgattgatttttgctttgagacagg
atctcaccatgtagccctagctgccctggaacttactttatagaccaggc
tagcctaaaactcacagagacccacctgcctctacctcctcagtgctttg
attaaaggtgtgtaccaccatgcctggctaggtctcttactgaaccccag
agcccactggtttgactatgcaggttgagaggatgctgcagatcgtcctg
tctcccaagcacgataaccacagaggtactaagactgtctggtttttttg
ttttgttttgtttgtttgttttgttttttttaaatgggtacaggggatct
gaactcaggttctcctatttctggagccagtactgtatccacaaagctgt
cttcccagctccccagtctatattcattgctgatggctttccacgggggt
gggggaaagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_25437242_25438064
seq2: B6Ng01-255M06.b_47_891 (reverse)

seq1  TAGGAGCCAGG--ATGT-GGGTGCTGGGAA--CCAAACCCAGGTCCTCTG  45
      |||||||||||   ||| ||||| ||||||  | |||||||||||||  |
seq2  TAGGAGCCAGGGATTGTGGGGTGTTGGGAAACCAAAACCCAGGTCCTGAG  50

seq1  -CAGGAGCA-GCTAC-GGCTCTT--AAGTGAAGAGCTATCTCTCT-GGCC  89
       |||||||| | ||| |||||||  | |||||||||||||||| | ||||
seq2  CCAGGAGCAGGTTACGGGCTCTTTAAGGTGAAGAGCTATCTCTTTAGGCC  100

seq1  CTGC-AGC-ATTTA-TTTCTATTTTT--CCATACAGTTTTAAATTTTATT  134
      |||| ||| ||||| |||||||||||  ||||||||||||||| ||||||
seq2  CTGCAAGCAATTTATTTTCTATTTTTTCCCATACAGTTTTAAAATTTATT  150

seq1  TTATTTTA-TTTTATTTTAGAATT-AGGTG-TTTGC-ATGCATGTG-ATG  179
      |||||||| ||||||||||||||| ||||| ||||| ||||||| | |||
seq2  TTATTTTATTTTTATTTTAGAATTAAGGTGTTTTGCAATGCATGGGAATG  200

seq1  AATACCTCTGAAGGT-GGAGACATTGAATTCCACCGAAAACGGAGTTAAG  228
      |||||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  AATACCTCCGAAGGTGGGAGACATTGAATTCCACCGAAAACGGAGTTAAG  250

seq1  AGTGATCGTGAGGCACGTGGTGATCGTGCTGGGAACTGAGCTCATGCCCT  278
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCGTGAGGCACGTGGTGATCGTGCTGGGAACTGAGCTCATGCCCT  300

seq1  CTTCAAGAGCTTTTATTTGTGGGCTTTTATCCCCTGAGCTGTCTCTCTAG  328
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGAGCTTTTATTTGTGGGCTTTTATCCCCTGAGCTGTCTCTCTAG  350

seq1  CTCTCTTGATTTTCTTTCCCTTTTTTTTAATTTAAAGTTTTTTTTTTAAT  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTGATTTTCTTTCCCTTTTTTTTAATTTAAAGTTTTTTTTTTAAT  400

seq1  TAAAATTGATTTGCACATCTATCTCTCTAGCCCAGTTAGGTTTTGTTTGT  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTGATTTGCACATCTATCTCTCTAGCCCAGTTAGGTTTTGTTTGT  450

seq1  TTTCGTTTTGTTTTTAAATCTATTTATTTTATGTATGTGAGTACACTGTA  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTTTTGTTTTTAAATCTATTTATTTTATGTATGTGAGTACACTGTA  500

seq1  GCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCGCATTACAGATGGT  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCGCATTACAGATGGT  550

seq1  TGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCTGGACTTCCGAAAGT  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCTGGACTTCCGAAAGT  600

seq1  GTAGCCAGTGCTCTTAACTGCTAAGTCATCTCTCCAGCCCCCCCCCTTTA  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCAGTGCTCTTAACTGCTAAGTCATCTCTCCAGCCCCCCCCCTTTA  650

seq1  ATTTTTTAATCAGCTCCACTCTTTATCTTCCCTCTTCTTCCCTTGACAAC  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAATCAGCTCCACTCTTTATCTTCCCTCTTCTTCCCTTGACAAC  700

seq1  ATGGGCTTTCTCTTTCTCTTCCCTCCCCTTTTTCCTCCTCCTACCCCCAT  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTTTCTCTTTCTCTTCCCTCCCCTTTTTCCTCCTCCTACCCCCAT  750

seq1  GCTCCATCCATCTTTCCAGACAAGGTCCTGGTATATAACTACATAACTCA  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATCCATCTTTCCAGACAAGGTCCTGGTATATAACTACATAACTCA  800

seq1  ACCTGGCTTAGAACATGCAATGTAGCCTAGGCTACCCTGGAATTC  823
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCTTAGAACATGCAATGTAGCCTAGGCTACCCTGGAATTC  845

seq1: chr7_25260218_25261280
seq2: B6Ng01-255M06.g_70_1131

seq1  GAATTCTTACTCGGACTCACCGACTCTTCTTTTTCCTCAGTGCTGGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTCGGACTCACCGACTCTTCTTTTTCCTCAGTGCTGGGAAA  50

seq1  CCGGAGTTATACCGTAAGAGGCTGCGCCACGGCTTCCTGGTGCCAAGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGTTATACCGTAAGAGGCTGCGCCACGGCTTCCTGGTGCCAAGGCT  100

seq1  CCCACGTGGCAGACTCCTTCCCGACCCACCTCAACGTCTCTGTCTCCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGTGGCAGACTCCTTCCCGACCCACCTCAACGTCTCTGTCTCCTGC  150

seq1  TGCCACGGCAGCGGCTGTAACAGCCCCACAGGGGGCGCCCCCAGGCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACGGCAGCGGCTGTAACAGCCCCACAGGGGGCGCCCCCAGGCCAGG  200

seq1  CCCTGCTCAACTCAGCCTCATTGCCTCTCTGCTCCTGACCCTCGGACTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTCAACTCAGCCTCATTGCCTCTCTGCTCCTGACCCTCGGACTAT  250

seq1  GGGGCGTCCTCCTCTGGACCTGACTCCTGAGCCGGCAGCCCTGGCTGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGTCCTCCTCTGGACCTGACTCCTGAGCCGGCAGCCCTGGCTGGAC  300

seq1  CCAGGGTCTTTTGACTCCCTCCCCCCTGCTCCATCTTTGAGGATGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTCTTTTGACTCCCTCCCCCCTGCTCCATCTTTGAGGATGTGTGT  350

seq1  GCCCTCGTGTTGTCTTCTTTGGACCTCAGTTTTTCCATGAACCAGAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCGTGTTGTCTTCTTTGGACCTCAGTTTTTCCATGAACCAGAAGAG  400

seq1  AATTGGAACAAGGGCTGCGGGCAGCAGGGGCCTCTTAGTTGAGATAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAACAAGGGCTGCGGGCAGCAGGGGCCTCTTAGTTGAGATAATAT  450

seq1  TGTTGCTGTTATTATTATTATTATCATTGTTATTGCTCTAATTTATTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTGTTATTATTATTATTATCATTGTTATTGCTCTAATTTATTATA  500

seq1  TAAATATATATATAAAAGATTTTTGTACCAGTGAACAAGGTTGGGTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATATATATAAAAGATTTTTGTACCAGTGAACAAGGTTGGGTCTCC  550

seq1  CCACTGTCACATTTAGCTTGGGAAGATGAGAGCAGCAGGGAATTGTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTCACATTTAGCTTGGGAAGATGAGAGCAGCAGGGAATTGTTTTT  600

seq1  TTGTTTGTTTGTTTGTTTGATTGATTGATTGATTTTTGCTTTGAGACAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTGTTTGATTGATTGATTGATTTTTGCTTTGAGACAGG  650

seq1  ATCTCACCATGTAGCCCTAGCTGCCCTGGAACTTACTTTATAGACCAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACCATGTAGCCCTAGCTGCCCTGGAACTTACTTTATAGACCAGGC  700

seq1  TAGCCTAAAACTCACAGAGACCCACCTGCCTCTACCTCCTCAGTGCTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTAAAACTCACAGAGACCCACCTGCCTCTACCTCCTCAGTGCTTTG  750

seq1  ATTAAAGGTGTGTACCACCATGCCTGGCTAGGTCTCTTACTGAACCCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGTGTGTACCACCATGCCTGGCTAGGTCTCTTACTGAACCCCAG  800

seq1  AGCCCACTGGTTTGACTATGCAGGTTGAGAGGATGCTGCAGATCGTCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACTGGTTTGACTATGCAGGTTGAGAGGATGCTGCAGATCGTCCTG  850

seq1  TCTCCCAAGCACGATAACCACAGAGGTACTAAGACTGTCTGGTTTTTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAAGCACGATAACCACAGAGGTACTAAGACTGTCTGGTTTTTTTG  900

seq1  TTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTTTAAATGGGTACAGGGGAT  950
      |||||||||||||   ||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTTT--GTTTGTTTTGTTTTTTTTAAATGGGTACAGGGGAT  948

seq1  CTGAACTCAGGTTCTCCTATTTCTGGAGCCAAGTACTGTATCCACAAAGC  1000
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTGAACTCAGGTTCTCCTATTTCTGGAGCC-AGTACTGTATCCACAAAGC  997

seq1  TGTCTTCCCAGCCCCCCAGTCTATA-TCATTGCTGAT-GCCTTCCACGGG  1048
      |||||||||||| |||||||||||| ||||||||||| || |||||||||
seq2  TGTCTTCCCAGCTCCCCAGTCTATATTCATTGCTGATGGCTTTCCACGGG  1047

seq1  GGTGGGGGAAGGGGG  1063
      |||||||||| ||||
seq2  GGTGGGGGAAAGGGG  1062